Viruses: 8451061
Help
Entry
8451061 CDS
T40000
Symbol
TICVs1_gp2
Name
(RefSeq) Tomato infectious chlorosis virus; ORF 1a polyprotein
Virus
52135
Tomato infectious chlorosis virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Viral_helicase1
Vmethyltransf
AAA_19
AAA_30
PDDEXK_4
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
8451061
NCBI-ProteinID:
YP_003204953
RS:
NC_013258
UniProt:
C7B978
LinkDB
All DBs
Position
NC_013258:94..5763
Genome browser
AA seq
1889 aa
AA seq
DB search
MVSFQVEDNKLPLYFTNSFDSKSICQVTYNELNKTKRKITSLSKCILGYPLQLVGQSFKK
GALKYLRQYYQLPGCNFNKIPLKLARSFRSPMLELVNRVNEYKLGLVGEDSSAPALSEWK
IQGSTGVNSDYVLWYNDDVEAVDVMARNVDVNKSTVAIEWRLRWNGRLNKGWGNYEVDYT
RHFNRPVNNKVVGSFALFNPKSVADKKAQCCLMYLLSYDRTLVNKMGIYINIKLSEWGKS
ELKRVMNMERMTGANTNPNKPVTAEQKTILRRGRNQYKNGFFEVALVRDKQKKETFVINS
NDGREVRVLNDRNAVKNVFNATLHNKSYVLHPMSFTPSGKRVFQEKEGYCWLDAFSEGGR
RIPDNVIPFKHLRVHVLLSCGLGHLLKKHMRKTGNMMYHFEIEPTNKPVTMEYMGFLGAG
AMFNGDDDTKDLNLRVDGFIDKVLENTAIRGDNVLMNNILHRASERLNIEATKSKDVQIR
VCLDNNEKRMLTRLFPEMSMDFLDSSSSSHALFNAMRQCENYYFHKMMGSRDYIDAGGDI
IQNLSEHSNNIHVCSPLVDVRDAKRHMDKSIILDKMRGFSEKLFMCDKLTQDCDHKATNI
VAVEVYDMTLQDIARSIQSHGAKRFDLSCIIPPEIVNDDCDVELFDGRLRVTVSGGLAEY
FYGNTGETYTHNVHTLRDIMKNQIFVVDGLVFKRTLEKSKDQLHFFSIVPCYDFPSGDYM
VSTHYHRSELDKVYVNVPIKDAYGVTTFLKFKEDRSFVHSMVEYVANTSIRVDDKTIEWA
ISQYRARKTVVIKAGKVSQKESCVPLDLLPGFLATIIAEGIRVREKTHHLARMSYIRHYI
PSIVDIVFMLIKTFFTHVIKQTHQLFVDVLRYFFTDKLVDALMNVEGRIEDPPKTMVFQQ
SFSVFTDTRSKNHILMNSFNHFLDDQIEQPESVADDKEWGEFDDVSLEGEVSELINSGGG
ANSDFFFYCRMSKLVRTFLPVNQSTKVIDLIMKAYIGIKSKFTALKRKLIDALRYIKSTY
MTGLGAILSLLLRELRKPIDWASKKLSNMLKRKIDDCIDDLSSNGISSDPFENPMFSDSS
DEELPDLEDIESESNGVISEVQKPRTCYWKNLKQWMKITYQNIVAWFKDKRKNNTFAKGY
NQAVSTLTLILSDVDAFNNVYNLIVSCGVNAALSVVFGNFYIPYYMLQCGVNATLRTGVF
GKMSETTILAADTIMSGLADVRFLHPNYMTLKWGANKMLATKGKIKLKSVPQLKEVCEES
IKKDLIGSELICSLPLKAYIWILYALLFIWFLYPAQTTCLLFIAYPLYDYRKYITNMVYP
SNIMASYPRAVNRFKNTYNMKQLRKAIREKFSDTKTGNDDQGETEKHPFEAYEGTYEHQT
DGKEEIINEGNKPDLIEEQVGKENVGVNSNNFDSKKPTLFKGDRLRNSDIKLCKFLQFYP
LSVCASFSLTNDKVVDSIEEFYFLERKKLEIELGKVKNTLHMIQTHGNMISSLRKFTNDK
TVYVSSGNNNYYRMSFRDQHPSKEDFKVKFNSAMEMIPGNVITSDVCVTTDEFRGMYSNA
RCLAIESMFDENNNLVKRPNLESMTFFNKPPGAGKTTEIVNLMDHDLKLGLKTMAFSATK
MGCNELKTKLANKGVSQVDKLVRTYDSLLMNTPNVIELDKAYFDEAYMIHSGQFLVCAAK
LKYNNLYCYGDVNQLPYINRNPYVTDYHSFSIFEDVELNHDDKTFRCPADVCYLLSNLKN
DAGKPLYPRGVKNSNPGSKVIRSCEVEGVNGVNQIEIQKDVKYLTFTQDEKIELQHHIAR
SGGCEHEVNTVHEAQGCTFPSVALVRLRGHDNPVMSNINQIVVAMSRHTKHFKYFVLHSK
LDDKVSSHVKTLKTVADYILKDFMFKQSV
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atggtttcttttcaagttgaagataataaactacctttatattttacgaacagtttcgac
agtaagtcaatatgtcaagtaacctacaatgaactaaacaaaacaaaacgaaaaataaca
agccttagcaaatgtatcttagggtacccgttgcagttggtcggtcaatccttcaagaag
ggtgcgttaaaatatttgaggcagtactaccaactaccaggatgcaattttaacaaaata
ccactgaagttggctagatcatttcgatctcccatgcttgagttggttaatagggtgaat
gaatacaagttaggtttagtcggagaagatagttcggcccccgcattaagtgaatggaaa
atccaaggatccactggggtcaattcagactatgtattgtggtataacgatgatgttgaa
gcggtagatgtcatggccaggaatgtggatgtcaacaaatccactgtagcaattgaatgg
agactcaggtggaatggtcgtctcaataagggttggggtaactacgaagttgactatact
agacattttaatcgccccgtaaataacaaagtagtagggtcttttgctttgtttaacccc
aaatcagtggcagataagaaagcccaatgctgtttgatgtacttactatcatacgataga
acgttagtaaacaaaatgggaatctatataaatataaaattgagtgagtggggaaagtct
gaactcaagagagtgatgaatatggagaggatgactggtgcaaacacaaacccaaataaa
ccagtcaccgccgaacaaaagaccattctccgccgaggtagaaatcagtataaaaatgga
tttttcgaagtagcattggtgagagacaaacaaaagaaagaaacatttgtcattaattcc
aatgacgggagagaggtcagagtgctcaatgataggaacgcagttaagaatgtgttcaac
gccactctgcataataagagttatgtgttacacccaatgtcattcaccccatctggaaag
agggtctttcaagagaaagaaggttactgttggttggatgcattttcggaaggaggtaga
agaataccagataatgtcatcccgttcaagcatttgcgagtacatgtgcttttgtcatgt
gggttgggccatttgttgaagaaacatatgcgaaaaactggtaacatgatgtatcacttt
gagatagagcccacaaacaaacccgttaccatggagtatatgggtttccttggtgcagga
gctatgttcaacggtgatgatgacaccaaagacctcaatctccgagttgatggcttcata
gataaagtgctggaaaacaccgccatcaggggagacaacgtcctaatgaacaacatactc
cacagagcgtctgagagattgaacattgaggccacaaaatctaaagacgttcaaatccga
gtgtgcctagataataatgagaagaggatgttaacgagactattcccagagatgtccatg
gacttcttggacagctcaagttcatcacatgcattgtttaatgcgatgagacaatgtgag
aactattacttccataagatgatgggtagtcgagattatatagatgctggtggagacata
atacagaatctaagtgaacattcaaataacatacatgtctgttctccattagtagatgtc
agagatgccaaaagacacatggacaaatctattattttagataaaatgagaggatttagt
gagaaattgtttatgtgtgacaaactgacgcaagattgcgatcacaaagcaacaaacatc
gtggcggtggaggtgtacgatatgactctccaagatatagctagatctatacagtcacat
ggagctaaaaggtttgatctaagttgcatcatacccccggaaatcgttaatgacgattgt
gacgtggaattatttgacgggaggttgagagtcacagtaagcggaggcttggcagaatac
ttctatggcaacaccggtgaaacatacacccacaatgtccacacattgagagatataatg
aagaatcaaatttttgtagtagatgggttggtgttcaaaaggacattggagaaatccaag
gatcaattacattttttctcaatagtaccttgttatgactttccgtctggagactatatg
gtgtccactcattatcatagaagtgaactagataaggtgtacgtgaacgtacccatcaaa
gatgcctatggagtgacaacttttttaaaattcaaggaagatagatcattcgttcacagc
atggtcgaatatgtggcaaacacatctattcgagtagatgacaaaaccatagaatgggcc
atatctcaatatagagcgaggaagactgtagtcatcaaggctgggaaagtgtcgcaaaag
gaaagttgcgtaccattagatctattaccgggattcttagccacgataatagccgaagga
ataagagttagggagaaaacccaccatttggccagaatgtcatatattagacattacatc
ccttccattgtggatatagtgttcatgttaataaaaactttcttcacccatgtcattaag
caaacccaccaactattcgtggacgtgctgagatatttcttcactgataaattggtagac
gcgttgatgaacgtggagggtagaatagaggatccaccaaaaaccatggtatttcaacaa
tccttctcagtgttcacagacacgagatccaagaatcatatactcatgaatagttttaac
cactttctggacgatcaaatagaacagccggaatcagtcgcggatgataaggagtgggga
gagttcgatgacgtatcactagagggtgaagtgagtgagttaataaattctggaggtgga
gccaacagcgatttcttcttttattgccgaatgtctaagttggtaagaacttttctccct
gtcaatcaaagcacaaaagtgatagacttgatcatgaaagcctacatagggataaagtca
aaattcaccgctttgaaaagaaagttgatagatgcattgagatacataaagtctacttat
atgacaggattgggtgcgatactttctttactgttgcgagaattgaggaagccaatagat
tgggcgtctaagaaattgtctaatatgctgaaaagaaaaatagatgattgtattgatgat
ctcagtagcaatggaatttcatcagatcctttcgaaaaccctatgttttcagattcgtca
gatgaagaacttcctgatttggaggacatagaaagtgaatcaaacggagtcatttcagaa
gttcaaaaaccccggacttgttattggaaaaatttgaaacaatggatgaaaatcacatat
caaaacatagttgcttggtttaaagataaacggaagaacaacacgtttgctaaaggttat
aaccaggctgtttccacgttgacattaatactttcagatgtagacgcattcaacaacgtg
tacaatttgattgtctcgtgtggggtcaatgcagctttgagtgtggtgtttggcaatttc
tacataccttattacatgcttcagtgtggggttaatgcgacattgagaacaggtgttttt
ggaaaaatgtcagaaaccaccatactggctgcagacaccatcatgtccggactggcggac
gtcagattcctacacccaaattatatgactttgaaatggggtgctaacaagatgctggcc
acgaaaggtaagatcaaattgaaatcagtcccacagcttaaggaggtgtgtgaagagagt
atcaaaaaagacctgatagggtccgaattgatatgttcactacctttgaaagcttatatt
tggatattgtatgcactactattcatttggtttctatatccagctcaaaccacgtgctta
ttattcatagcttacccgttgtacgattatagaaagtacatcactaatatggtgtacccc
agcaacatcatggccagttatcctcgggctgtgaacaggttcaaaaacacgtacaacatg
aagcaattgaggaaagctataagagaaaaattttctgatacaaaaacaggaaatgatgat
caaggagagacagaaaaacacccatttgaagcttatgagggtacgtatgaacatcaaaca
gatggcaaagaggaaataattaacgaaggtaataagcccgatctcattgaagaacaggtt
ggtaaagaaaatgttggtgttaacagtaataattttgacagcaagaaaccaacattgttc
aaaggtgataggttgagaaactccgatattaaattgtgtaaatttcttcaattttatcct
ctatcagtatgcgcaagtttcagtcttactaatgacaaggtggtcgacagcatcgaagag
ttttatttcttagaaagaaagaaactggagatagaattaggtaaagtgaagaacacgttg
cacatgatacaaactcatgggaatatgataagcagtctgcggaaattcactaacgataaa
acggtgtacgttagctctggcaacaacaattactatagaatgagctttcgagatcaacac
cctagtaaggaggacttcaaagtgaaattcaactcggctatggaaatgataccaggtaat
gtgatcacttcagacgtgtgcgtgacgacagacgaattcaggggtatgtactccaacgcc
aggtgtttagccattgaatctatgtttgatgaaaacaacaacttggttaaaagacctaat
ctagaaagtatgactttcttcaacaaaccacctggggcgggaaaaacaactgaaatagtg
aatttgatggatcacgatctgaaacttggattaaaaaccatggctttctcagcaaccaaa
atgggttgtaatgagctgaaaacgaaactggcgaataagggagtcagccaagtagataag
ttggtgagaacgtacgacagtttgctaatgaacactcccaatgtgatagaactagacaaa
gcgtactttgatgaggcatacatgattcattctgggcaattcttggtgtgtgcagctaag
ttgaaatacaacaatctgtactgttacggagatgtcaatcaattgccttacattaacagg
aatccgtacgttactgactaccattcattcagcatatttgaagatgtggagttgaaccac
gatgacaaaaccttcagatgtccggctgatgtgtgctacctactctccaatttaaagaat
gacgctggaaaacctttgtatcctagaggtgtaaagaattccaacccagggtcgaaggta
attagatcttgcgaagtggaaggggtgaatggtgtaaaccaaatagagatccaaaaggac
gttaagtatttaaccttcactcaagacgaaaagatagaattgcaacatcacattgccaga
tcaggaggttgtgagcatgaagtcaataccgttcatgaggcacaaggatgtaccttcccc
agtgttgctttggttagattaagaggtcatgacaaccctgtgatgagcaacattaatcag
atagtggtcgccatgtctagacacactaagcatttcaaatactttgttctgcattccaag
ttagacgacaaagtttcatcacacgtgaaaactttaaagactgtagctgactacatctta
aaagatttcatgtttaaacagagcgtttga
DBGET
integrated database retrieval system
