Viruses: 911844 Help Entry 911844            CDS       T40000                                  Symbol ORF_1, HpLVgp1 Name (RefSeq) Hop latent virus; polyprotein   KO K26628   Betaflexiviridae RNA replication polyprotein Virus 104263  Hop latent virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf RdRP_2 Peptidase_C23 Viral_helicase1 2OG-FeII_Oxy_2 AAA_22 2OG-FeII_Oxy AAA_19 nSTAND_NTPase5 Motif Other DBs NCBI-GeneID:  911844 NCBI-ProteinID:  NP_066258 RS:  NC_002552 UniProt:  Q9E9R6 LinkDB All DBs Position NC_002552:75..6020 Genome browser AA seq 1981 aa AA seqDB search MALTYRTPMEDIVISFEPQVQSLIANSAAELYKNLEKENCKYFNYYLPAVAKKKLSAAGI YLSPYSAVVHSHPVCKTLENYMLYSVLPNYLDGKYFFVGIKNKKINLLKSRNKKLESVIC INRLVTSADRLRYSNDFVTFESVSHEDLRRHGPGLSEPALQGIIEPLKRRKATHLFLHDE LHYWGSDDLCNFLQVVRPETLLATIVYPPELLFRQNRSLNEWCYTYEVRGQNLFFFPDGV RSEGYEQPLNGGYLLGCNKVVLKDGSVYMVDVLCSKFAHHLVAITRGAAVTSMHRSFGPF EACSSDSLAKLCPDYPVCFPVPHDVVNKIYRYLRTLKKPDVQSAIAKLSQIVSEPSGREI DFIEDFSKLVIKNESFNITIVPERLRQFVGTWLGRLPSALASKLEQVQSLCLSEFIKSLK PHNFTIKLEALKYNHLWNDVRLWVSEEGLEDYSIEGIDAKFTTGSHVPPRVASPYQGLAH FCDRAWKPLLLVDKKMLSSVLKRLAVQRFRGEHRRRISTAELESFVDSLLERAKLIQKQN RKGSFRERIAAHHYLNYDTIRDAARAIASLCMRWVRALFSELGPRWFLRFNRSNLMWLPA PSDAILLSREAEQNWAEVVRSICTQLGKSSYSWGQLTRTTPAEELPRATDTSGMLPVAAS VGLAELSRAGTLGCSCGVAMDISSISVAEHPFVARDFLKGRKAGWYSMGDVPYTYNGGSH KSQGWDSLLQMWCEANAVDPKYDSCLYQIYTEGAALGYHADDEDLFEQGESILTLNLSGA AEFGVKCKNGKGSVHLRGPQQFEMPAGFQVTHKHSVWGCSRQRESVTFRCLRKSRAIAQS VPASAAPELLYEHAVEAQQVLVEKAERNADVVAYKLGSVDVNVCEALWETVSYAALDVPG DGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQDGAYADDTCVAATVAVI NVQIRIWNKDVDKLFTFSKADVDKVIDLQLEGEHYMPMLIRNNCVVRAIADGLNRLECEV QHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGGRTVVYNEGGGTHMQFT LYNEHLSYNPRKKKPSLDLVAGAKHGKLFAASVIESLQAMGTMIARKPDITSAGLLADSF FEASTGVLRSSLFNDQSNLRKAFIENAGEESKPICTILGTFGSGKSYIFKKLLSGGAGRA FDYVSPRRALADEFKRSVGLVKKKGSQKVGQENWKVSTFETFLDRASHLLEGQVVVLDEV QLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAVLSCLAECCTALLRDETYKYN MRSKRFCNRNFIGRLPCTILESDCTTEEPHVLRAHIDNLADLEPAYTEVILVSSFDEKVV AQSYQSKARVLTFGESTGLTFDYGTILITSVAERVNEKRWVTALSRFRMNLCFVNCTSMS YEQLAVRYKGRFLCKFLCRGARTEDLQQLLPGKPQFTEEYSKAIGKDEGVREAKVAGDPW LKTMVNLLQAPDMQEEEIAEMALPEEWFRTHLPREELEGVRSRWVHKILAKEAREVRLGD IVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLSFSNPARERAK LHDACVYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIENHSGRSCRDW PIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEMKVHEVLPARF YIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKFLRLPHDMIED YKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYICFAGDDMCAS RELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFERMCIALELNNL ANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSDVRAVFEESPV S NT seq 5946 nt NT seq  +upstreamnt  +downstreamnt atggctctaacatataggacgcccatggaagatattgtaatttcatttgaaccacaagtg caatcactgatagctaatagcgccgccgagctgtacaagaatctagaaaaagaaaactgc aagtacttcaattactatttgcctgctgtggcaaagaaaaaattgagtgcagcaggaata tacttgagtccgtactcagccgtggtgcattcgcaccctgtttgcaagaccttagaaaat tatatgctatatagtgtactcccgaactacctagatgggaagtacttttttgttggaatt aagaataaaaaaataaatctgttgaagtctaggaataaaaagttggaaagtgtgatatgt atcaatcgcttggtgactagcgctgataggttgcggtactccaatgattttgtgaccttt gagtccgtatcgcatgaagacctcagacgccatgggcctggcttgagcgaacctgcgctg caggggataattgaaccgctgaagcggcggaaggccacgcatctcttcctgcatgatgag ttgcattactggggtagcgacgacctgtgtaatttcttgcaggtggtgcgcccagaaacg ctgttggccacgatcgtgtacccacctgagttgttattcagacagaatagaagtttgaat gagtggtgttacacttatgaggtaaggggccaaaatttgttttttttccctgacggggtg cgctcggagggctatgagcagcccctcaatggtgggtatcttttgggctgcaacaaagtc gtgttgaaggatggaagtgtgtacatggtggacgtgctctgcagtaaattcgcgcaccac ttggttgccataactagaggcgctgccgttacgagtatgcatcgatcatttggcccgttt gaggcttgcagctctgacagtctggcgaaattgtgtccagattaccctgtgtgctttccg gtgccgcacgatgtggtgaacaagatctaccggtacctgcgcaccttaaaaaaacctgat gtgcaatccgcaattgctaagctgagtcaaatcgtgagtgagccaagcgggcgcgagata gattttattgaagacttttccaaattggtgattaaaaatgaatctttcaatatcaccatt gtgcctgaaaggttacggcaattcgtaggcacatggttgggtcggctaccaagtgcgcta gcctctaaactcgaacaggttcagagtttatgtctcagtgaattcatcaaaagtttgaag ccccacaatttcacgattaagttggaagcactaaagtataaccacctctggaatgatgtg cgcctgtgggttagcgaggaagggctagaagattattcgatagagggcatagatgcaaag ttcacaacaggttcgcatgtgccaccacgagttgcaagcccatatcagggcttggcacac ttttgcgacagagcatggaagcctttactcctagtggataaaaaaatgcttagctcagta ctaaagcgtctagcagtacagagattccgaggtgagcatcgcaggaggatctccacagct gagctggagtcttttgtggatagcttactagaaagagctaaattgattcaaaaacaaaac cgaaagggcagttttagggaacgtatagcagcacatcattatctcaactatgacacaatt agggatgcagctagagccatagcttcattatgcatgcgttgggttagggccttattctca gaattgggaccaaggtggtttttgcgcttcaaccgatcgaacttgatgtggttaccagca cctagcgacgcaatattgctttcaagagaggcagaacaaaattgggcggaagtagtgcgg tcaatttgcacccagttggggaagtcgagctattcttggggacagctaaccaggacgacg ccggcagaggagctacctcgtgccactgatacgagcggcatgctgcctgtagctgctagc gtaggacttgctgagctttcacgtgcaggcactctcggttgcagctgcggtgtggccatg gacattagctctatatcggttgctgagcacccatttgtggcacgggacttccttaaaggt cggaaggctggttggtacagcatgggggacgtaccttacacttacaatggcgggagtcac aaatctcagggttgggattctttactacagatgtggtgcgaggccaatgcagtagaccca aagtacgatagttgtctgtatcaaatctacacagaaggggcagcgcttggttaccatgca gatgatgaggacttgtttgagcagggtgaaagtattcttacacttaacttgagcggcgcg gcagagttcggggtgaagtgtaagaacggcaaaggctcagtgcatctacggggcccgcaa caatttgagatgcctgctggattccaagtcacacacaaacatagtgtttggggttgtagc aggcaaagggagagtgtgacattcaggtgtttgcgcaagtcacgtgctattgctcaatcg gtgcctgcaagcgcggcgcctgagctgctatatgagcacgcagttgaagcacagcaagtt ttggtggagaaggctgaaaggaatgccgatgtagtggcgtacaagctgggcagtgtggat gtgaatgtttgtgaggcgctgtgggaaactgtgtcctacgccgcgctggatgtccctggg gatggttcctgcttctggcatagtgtgggtctactactaggtctcaattcattagagttg aagcggagatgtgtggggtaccggtttcacgctgagggactggatgctgaattggacaag gcggcacaagatggggcgtatgcagatgatacgtgtgtggcagccacagtggcagttata aacgtgcaaataaggatctggaataaggatgtggacaagctatttacgttcagtaaagcg gacgttgacaaagtaattgacctgcagctggagggagaacattacatgcctatgctcatt cgcaacaactgcgtggtgagagctattgcagatggattaaatagattggaatgcgaggtg caacatgtgctggaaaggaaatgtgcaccagtgctgcttgaagatttgcgcaaaggtcga gggttggaacccatgaatttggagctggttttttcatgcttcggagtgtgcgcactggta gatgtgggtggccggactgtcgtgtacaatgaaggaggcggcactcacatgcaattcaca ctgtataatgagcacttaagttacaatcctaggaaaaagaagcctagcttggacctagtg gcaggcgcaaagcatggcaagttgttcgcagcatccgtaatcgagtcactgcaagctatg ggtacaatgattgcgcgtaagcctgacatcacaagcgcaggcctattggcggatagcttc ttcgaagcaagtaccggggtcttgaggtctagcctgttcaatgatcagagcaatttgcgc aaagcctttattgagaatgccggggaagagagtaagcccatctgcactatactcggcact ttcggttcaggtaagagctacattttcaagaaactcctcagtggcggtgcgggaagggcg tttgactacgtctcaccaaggcgggccctggcagatgaattcaagcggagtgtgggcttg gtaaagaaaaagggcagccagaaagtgggccaagagaattggaaagtgagcacatttgag actttcctggacagagcgagtcatttgcttgaggggcaagttgtggtgttggatgaggtg cagctctacccgcctgggtacatagacttgattctctgcttgctgcatgtcccggtgcat ctcttcctcataggggatcctgtgcagagcgattatgataacgagaaagatcgtgctgtg ttgtcttgccttgcggagtgttgcacagcactcctccgggatgagacttataagtacaac atgcggagtaaacggttttgcaataggaactttataggccgcctaccctgcacaattttg gaaagtgattgcaccactgaagagccacatgtcctgcgtgcgcatatagataatctagca gatttggaaccagcatacaccgaggtgattttggttagctcttttgatgagaaggttgtg gcccagagctatcagtcgaaggctagggtgcttacatttggggagagtacaggcctgact ttcgactatggcacaatactcataactagtgtggctgagcgagttaatgagaaacgctgg gtgaccgcactcagtagattcagaatgaatttatgttttgtgaattgcactagcatgagt tatgagcagttggccgtaagatacaaagggaggttcttatgcaaattcttatgtcgaggg gctagaactgaggatctacagcagctgttgcctgggaagccacaatttactgaggagtac agcaaggcaattggtaaagatgagggggtgcgtgaagcaaaggttgcaggggatccatgg ctaaaaacgatggtgaatttgcttcaagcacctgatatgcaggaagaagaaatagcagag atggcattgccagaagagtggttccgtacgcatctgccgcgtgaagagcttgaaggtgta aggagtcgatgggtgcataaaattcttgcaaaagaagctcgtgaagtgaggttgggggac attgtatccgagcagttcactgatgaccattctaagcaaatcgggggccgccagctcaca aatgcagctgagcgcttcgagactatataccctagacaccgcgccaatgacactgtgact tttatcatggcggtaaggaagcgcttgagtttctcaaaccctgcaagggaaagggcgaag ttgcatgatgcatgtgtgtatgggcgtgcgctcttggatgtgttccgcaagcatgtgcct ctcaggccagagcacaatcataaatttatggaagcagctttgtggaactttgaagaaaag aaattgagtaagagtgcggcaactatagagaatcatagtggtagatcgtgtagggattgg cctattgatatggcccagatattctcgaaaagtcagctatgtactaaatttgataaccga ttcaggctcgcaaaagcagcgcagagtatagtttgcttccaacatgcagttctttgtcgc tttgcgccatttatgcggtacatcgagatgaaggtgcatgaggtacttccagctaggttc tacatacattctggcaagggattggatgaactaaactcttgggtgaagggcggaaagttt gatggagtctgcactgaatcagattatgaagcctttgacgcatcgcaggatgagtttata atggcgtttgagcttgagctaatgaagtttttgcgcctcccacatgatatgattgaagat tacaagttcatcaagactagcctcggttcaaagttgggcaattttgctataatgcgtttc tcaggcgaggcgagcacattcctctttaataccttagcaaatatgctatttactttcatg aagtatgagataaaaggggatgagtacatttgctttgcaggtgatgatatgtgcgcttca agggaattgaaagtcgttgggaaatacaagaaattccttgataagttaaagctgaaggcc aaggtccaaatgacccaaaagccgacattctgcggttggcacctctgcccagatgggatt tacaagaagccacagttggttttcgaacggatgtgcatcgcgctagagttaaataacttg gccaattgtatagataattatgctatcgaagtggcttttgcatatcgtctaggagagcgt gctgtgaatcggatggatgaggaggaggttggtgcattctacaattgcgtgcgtctcata gtgaggaataaacacctgcttaagtctgacgtgcgcgcagtgttcgaggaaagtcctgtg agttga

DBGET integrated database retrieval system