Viruses: 921087
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Entry
921087 CDS
T40000
Symbol
IM012_gp1
Name
(RefSeq) Maize rayado fino virus; polyprotein
Virus
59749
Maize rayado fino virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Tymo_coat
Vmethyltransf
Viral_helicase1
Salyut
Peptidase_C21
RdRP_2
Motif
Other DBs
NCBI-GeneID:
921087
NCBI-ProteinID:
NP_115454
RS:
NC_002786
UniProt:
Q91TW9
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_002786:127..6213
Genome browser
AA seq
2028 aa
AA seq
DB search
MSSFLRGGHLLSGVESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTC
GVDISGFGHAAHPHPVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHL
INYRLVPKDTTRYPSTSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVP
AESSFTHLSLHPELYRFRFQGSDLVYEPEGNPAANYTQPRSALDWLQTTGFTVGHEFFSV
TLLDSFGPVHSLLIQRGRPPVFQAEDIASFRVPDAVALPAPASLHQDLRHRLVPRKVYDA
LFNYVRAVRTLRVTDPAGFVRTQVGKPEYSWVTSSAWDNLQHFALQTAAVRPNTSHPLFQ
SPFARLSHWLRTHTWALWCLASPSASVSAWATASALGRLLPLHTDRLRLFGFDIIGRRFW
PRLPFHGPEPRFLWETHPACRPPVLFADSAFECQILAGLANRCSPSPFWSRLFPTASPPS
WVAYSALALAAVPLAALALRWFYGPDSPQALHDQYHATFHPDPWTLDLPRRLRRFERESF
MRTGSAPLPLSLPPPEGSLLPVEPPLAPSDPEPALEPSPPAASVPAPAPAPASEPPPSPE
SVAPPVAVVAPAVQPARAPSPSPALLGAELRFGDLPPVSAWDSDPEISKLGESTQGTVFA
VTPGPRAPEPDTARLDADPSASGPVMEFRELQKGAYIEPTGAFLTRARNSVSSSIPYPTR
AACLLVAVSQATGLPTRTLWAALCANLPDSVLDDGSLATLGLTTDHFAVLARIFSLRCRF
VSEHGDVELGLHDATSRFTIRHTPGHFELVADNFSLPALVGASSVPGADLAEACKRFVAP
DRTVLPFRDVHIHRTDVRRAKNLISNMKNGFDGVMAQANPLDPKSARERFLMLDSCLDIA
APRRVRLIHIAGFAGCGKSWPISHLLRTPAFRVFKLAVPTTELRDEWKALMDPRDQDKWR
FGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAAIQFVILLGDPIQGEYHSTHPSSS
NARLSPEHRYLRPYVDFYCFWSRRIPQNVARVLDVPTTSTEMGFARYSQQFPFFGKILIS
ARDSAKSLADCGYHAVTIASSQGSTIAGPAYVHLDNHSRRLSHQHSLVAITRSKSGIVFT
GDKAAADGTSSANLLFSAVLLDRRLSVRSLFSALLPCCPFVTEPPTSRAVLLRGAGYGVA
RPLRARDAPPLGPDYVGDVILDSSAPILGDGSANAPQVSTHFLPETRRPLHFDIPSARHQ
VADHPLAPDHSACAIEPVYPGESFESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFE
LGAQTSSLLAPLHNSKHDPTLLPASIGKRLRFRHSEAPYVIAPRDEILGSLLYAAACRAY
HRSPRDVEPFDPDLYAECINLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHK
VNEGSLFGSWKACQTLALMHDAVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADW
CRAHLTPAVKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGP
LTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPM
LALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGH
SSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHS
VYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLPLRGGHMPNPLAALF
RLLQQSSSLGPTYAVAPIARAPQVLPPSMADNATQVGPVPPRDDRVDRQPPLPDPPRVLE
TAPSHFLDLPFQWKVTDFTGYAAYHGTDDLSASAVLTTLCAPYRHAELLYVEISVAPCPP
SFSKPIMFTVVWTPATLSPADGKETDYYGGRQITVGGPVMLSSTTAVPADLARMNPFIKS
SVSYNDTPRWTMSVPAVTGGDTKIPLATAFVRGIVRVSAPSGAATPSA
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtttcctgcgtggtggtcatctccttagcggagtcgagtcccttacccccacc
acccatcgcgacaccatcactgcacccattgtcgagtcccttgccactcctcttcgccga
tccctcgaacgctacccttggtccatcccaaaggagttccactcgttcctccacacctgc
ggcgtcgacatctctggcttcggccatgccgctcacccccaccccgtccacaagaccatc
gagacccacctccttctcgatgtctggcccaactacgctcggggtccgtctgacgtcatg
ttcatcaagcctgagaagttcgccaagctccagtcccgacagcccaacttcgcccacctc
atcaactaccggctcgtgcccaaagacaccacccggtacccctccacttccacgaacctc
ccggactgcgagaccgtcttcatgcatgatgctctcatgtattacaccccagggcagatc
gctgacctctttttcctctgtccccagctccagaagatctatgcctccgttgtcgttccg
gctgagtcgagcttcacgcatctctcgctccatccggaactttaccgcttccgtttccag
ggttctgaccttgtctatgagccggagggcaacccagccgccaactacacgcagccgcgt
tcggccctcgactggctccagaccaccggtttcaccgttggtcacgagttcttctccgtc
acccttctcgactctttcggcccggtccattccctcctcatccagcgtggccgccctccc
gtctttcaggccgaagacatcgcttccttccgcgttccggacgccgtcgccctccccgct
cctgcctccctccaccaggaccttcgtcaccggctggtcccccgcaaggtgtacgacgcg
ctcttcaattatgtccgagccgtccgcacccttcgggttaccgaccccgccggcttcgtc
cggactcaggtcggcaagcctgagtacagctgggtcacctcttccgcctgggacaacctt
cagcacttcgcgctccagaccgccgccgttcgtcccaacacctcgcatccccttttccag
tcgcccttcgctcgcctgtcccactggcttcgcacccacacttgggcgctctggtgcctg
gcttccccctcggcctctgtctctgcctgggccactgccagtgccctcggccggctcctc
ccccttcacaccgaccgtctcaggctgttcggcttcgacatcatcggccggaggttctgg
cctcgtctcccattccatggccccgagccaaggttcctttgggagacccatccagcctgc
cgcccgccagtgctctttgccgactcagcctttgagtgccaaatccttgctggtttggca
aaccggtgttctccctcccccttctggtcgcgtctgttccccacggcctctccgccgtcc
tgggtcgcctactcagccttggccctagccgccgtgccgctggctgcgttggccttgcgc
tggttttacggcccggactctccccaggctcttcacgatcagtatcatgccaccttccat
cccgacccgtggactctcgaccttcctcgtcggctccgccggtttgagcgcgagtccttc
atgcggacgggttccgctcctttgcccctgtcgctccctcctcctgaaggctctcttctc
ccagttgagcctcctcttgccccgagcgatcccgaaccagccctcgagccgtcaccccca
gcggcttcggtccctgcccctgccccagctccagcttcagagcctcctccttctcctgag
tcggtcgccccccccgtcgccgtcgtcgcgcccgccgtgcagcctgcgcgggctccgtcc
ccttctccagcgcttctgggcgccgagcttcgcttcggggaccttcctcctgtctctgct
tgggacagtgaccccgagatctcgaagcttggtgagtccacccagggcaccgtctttgcg
gtcacccctggccctcgcgctcctgagccagacaccgcccgcttggatgctgatccttca
gccagcggtccagttatggagtttcgtgagcttcagaagggcgcttacatcgagccgact
ggcgccttcctcactcgggcccgcaactcggtgtcctccagcatcccttaccctacgagg
gctgcctgtctcctcgtggccgtcagtcaagcgacagggcttcccacccgcactctctgg
gcagccctctgcgccaaccttccggattccgttctcgacgacggttcactcgccaccctg
ggcctcaccaccgaccacttcgccgtccttgctcgcatcttctccttgagatgtcgcttc
gtcagcgagcatggcgacgttgagctcgggcttcatgatgccacctctcgcttcacgatc
cgccatacccctggccacttcgagctcgtggctgacaacttctctcttcccgctctcgtc
ggcgcctcttctgttccgggcgctgacctagccgaagcgtgcaagcgttttgtggctccg
gaccgcaccgtcctcccgtttcgagacgtccacatccatcgcaccgacgtccgccgtgcc
aagaacctcatctccaacatgaagaatggtttcgacggcgttatggcgcaggccaaccct
ctcgacccgaagagtgcccgagagcggtttctcatgctcgactcttgcctcgacatcgct
gcgcctcgccgggttcgtctgatccacattgcaggcttcgctggttgcgggaaatcttgg
ccgatctcccatctgctccgcacccccgcctttcgcgtcttcaagctcgccgttccaacc
accgagcttcgcgacgagtggaaggcccttatggatcctcgtgaccaggacaagtggcgc
tttggcacctgggagtcttccctcctcaagaccgcccgcgtccttgtcatcgatgaggtg
tacaagatgcctcgcgggtatcttgatctggccatccatgcggacgccgccattcagttc
gtgatcctgctcggcgatccgattcaaggcgagtatcactccacacatcccagctcctcc
aacgcccgcctttctcccgagcaccggtacctccgcccgtatgtggacttctactgcttc
tggagtcgccgcatccctcagaatgtggcccgcgtcctcgacgtgcccacgacctcgact
gagatgggctttgctcgctactcgcagcagttcccgttctttgggaagatcctcatctca
gcgcgcgactccgccaagagcctggctgattgcggctaccatgctgtcactattgccagc
agtcaggggtccaccattgctggtccggcctatgtccacctcgataaccactcgaggcgt
ctctcacaccagcattctctcgtcgccatcactcgatccaaatccggcatagtcttcacc
ggcgacaaggctgcagcggacggcacttcctccgccaatctcctcttctccgctgtgctc
ctcgatcggcgtctctcggtgcgctcccttttcagcgcgctcctgccctgctgcccgttc
gtcacggagcctccaacgtctcgagccgttctcttgcgtggagctggctacggcgtcgct
cggcctcttcgcgctcgcgacgcccctcctctcggccccgattacgtcggagacgtcatt
cttgactcctccgccccgattcttggtgacggatcggccaacgctccccaggtcagcact
cactttcttccggagacgcgtcggcctttgcatttcgatattccttctgcccgtcatcaa
gtcgccgatcaccctctcgcgcccgatcactccgcctgcgccattgagcccgtatatcct
ggtgagagcttcgaatctctcgcctctctctttctccccccgacggatgccgagagcaag
gaaacttacttccgaggggagatgtcgaatcaattcccccatctcgataagccgttcgag
ttgggtgcgcagacgtcgagcctccttgcgccgcttcacaactccaagcacgaccctacg
ctcctcccggcttccatcgggaagagactgcgcttccgccattccgaggcaccctacgtc
atagcccctcgcgacgaaattctggggtcactcctctacgcggccgcgtgtcgagcctat
caccgttcccctcgggacgttgagccgtttgacccagacctttatgccgagtgcatcaac
ctcaacgagtttgcgcagctctcttccaagacccaggcaaccatcatggccaacgccaac
cgcagcgacccagactggcgctggtccgccgttcgcatcttcgccaagacgcagcataag
gtcaacgagggctcgcttttcggctcctggaaagcctgccaaaccctcgctctcatgcac
gatgctgtcgttctgctccttggccccgtcaagaagtatcaacgcttcttcgatcagcgc
gatcggccttccaccctctacgtccacgcgggccacactcctttcgagatggccgactgg
tgccgcgcccatctgacccctgcggtcaagctggccaatgactacaccgctttcgaccag
tcgcagcacggcgaggccgttgtcttcgagcgctacaaaatgaatcgcctctcaattccc
gccgagctcgttgacctgcacgtctacctgaagaccaacgtctccactcagtttggtccg
ctgacgtgtatgcgcctcactggtgagcccggcacgtacgacgacaacaccgattacaac
attgccgtgctacacctcgagtatgctgtcggttccactccgctcatggtctctggtgat
gactcgctgctcgactctgagcctcctgtccgcgaccagtggtctgccattgctcccatg
cttgctctcaccttcaagaaggagcgtggccgttatgccaccttttgcggctactacgtc
ggcttcaccggtgcagttcgatcgcccccggcccttttcgcgaagctcatgatagcggtc
gatgacggatccatctctgacaagctcatcgcctatctcacggagttcactgttggccat
tcttccggcgatgccttctggaccatcctcccagtcgaggctgttccttaccagagcgcc
tgcttcgacttcttctgccgtcgagctccggcacaggccaaagtgatgttgcggcttggc
gaggcacccgagtccctgctctccctggcatttgagggtctgaagtgggcctcccactcg
gtgtatgccctcatgaactccagtcatcgacgccagctgctccacagctctcgccgcccc
cgctctctccccgaggaccctgaagtttcgcagcttcagggtgaattgcttcatcagttt
caatcgcttcacctcccgctccgtggtggccacatgccaaatccgcttgccgcgctcttc
aggctccttcagcaaagcagctcccttggtcccacttacgcagtcgcccctatcgctcgg
gctccccaggttcttccgccctctatggccgacaatgccacccaagtcgggcctgttcct
cctcgcgacgaccgcgttgatcgccagcctcctcttcctgatcctcctcgtgtgctcgag
acggccccgtcgcacttcctcgacctccctttccagtggaaggtcacggacttcacagga
tacgccgcctaccacggaaccgacgacctgtccgcctccgcggtactgaccacactttgc
gcgccgtaccgccatgccgagctcctctacgtcgagatctccgtcgcgccgtgcccccct
tcgttctccaagcccatcatgttcaccgtcgtctggactccggccactctgtcccccgcc
gacggcaaggagaccgactactatgggggccgtcagatcaccgtgggcgggcctgttatg
ctgtccagcaccaccgccgtacccgctgacctggcccgcatgaaccccttcatcaagtcc
agcgtctcctacaacgacacgccccgctggaccatgtccgtccccgccgtcactggtggg
gacaccaagatcccgctcgccaccgccttcgttcgcgggatcgtccgcgtgtcagccccc
tctggggctgccaccccctctgcctaa
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