Viruses: 922350
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Entry
922350 CDS
T40000
Symbol
SFVgp1
Name
(RefSeq) Semliki Forest virus; Nonstructural polyprotein
KO
K25300
Alphavirus polyprotein P1234
Virus
11033
Semliki Forest virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_2
Peptidase_C9
nsP3_ZBD
ToMV_Hel_N
Vmethyltransf
Viral_helicase1
Macro
RdRP_4
AAA_30
RdRP_1
AAA_11
MeaB
Motif
Other DBs
NCBI-GeneID:
922350
NCBI-ProteinID:
NP_463457
RS:
NC_003215
UniProt:
P08411
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_003215:86..7381
Genome browser
AA seq
2431 aa
AA seq
DB search
MAAKVHVDIEADSPFIKSLQKAFPSFEVESLQVTPNDHANARAFSHLATKLIEQETDKDT
LILDIGSAPSRRMMSTHKYHCVCPMRSAEDPERLDSYAKKLAAASGKVLDREIAGKITDL
QTVMATPDAESPTFCLHTDVTCRTAAEVAVYQDVYAVHAPTSLYHQAMKGVRTAYWIGFD
TTPFMFDALAGAYPTYATNWADEQVLQARNIGLCAASLTEGRLGKLSILRKKQLKPCDTV
MFSVGSTLYTESRKLLRSWHLPSVFHLKGKQSFTCRCDTIVSCEGYVVKKITMCPGLYGK
TVGYAVTYHAEGFLVCKTTDTVKGERVSFPVCTYVPSTICDQMTGILATDVTPEDAQKLL
VGLNQRIVVNGRTQRNTNTMKNYLLPIVAVAFSKWAREYKADLDDEKPLGVRERSLTCCC
LWAFKTRKMHTMYKKPDTQTIVKVPSEFNSFVIPSLWSTGLAIPVRSRIKMLLAKKTKRE
LIPVLDASSARDAEQEEKERLEAELTREALPPLVPIAPAETGVVDVDVEELEYHAGAGVV
ETPRSALKVTAQPNDVLLGNYVVLSPQTVLKSSKLAPVHPLAEQVKIITHNGRAGGYQVD
GYDGRVLLPCGSAIPVPEFQALSESATMVYNEREFVNRKLYHIAVHGPSLNTDEENYEKV
RAERTDAEYVFDVDKKCCVKREEASGLVLVGELTNPPFHEFAYEGLKIRPSAPYKTTVVG
VFGVPGSGKSAIIKSLVTKHDLVTSGKKENCQEIVNDVKKHRGKGTSRENSDSILLNGCR
RAVDILYVDEAFACHSGTLLALIALVKPRSKVVLCGDPKQCGFFNMMQLKVNFNHNICTE
VCHKSISRRCTRPVTAIVSTLHYGGKMRTTNPCNKPIIIDTTGQTKPKPGDIVLTCFRGW
AKQLQLDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYAPASEHVNVLLTRTEDRLVW
KTLAGDPWIKVLSNIPQGNFTATLEEWQEEHDKIMKVIEGPAAPVDAFQNKANVCWAKSL
VPVLDTAGIRLTAEEWSTIITAFKEDRAYSPVVALNEICTKYYGVDLDSGLFSAPKVSLY
YENNHWDNRPGGRMYGFNAATAARLEARHTFLKGQWHTGKQAVIAERKIQPLSVLDNVIP
INRRLPHALVAEYKTVKGSRVEWLVNKVRGYHVLLVSEYNLALPRRRVTWLSPLNVTGAD
RCYDLSLGLPADAGRFDLVFVNIHTEFRIHHYQQCVDHAMKLQMLGGDALRLLKPGGILM
RAYGYADKISEAVVSSLSRKFSSARVLRPDCVTSNTEVFLLFSNFDNGKRPSTLHQMNTK
LSAVYAGEAMHTAGCAPSYRVKRADIATCTEAAVVNAANARGTVGDGVCRAVAKKWPSAF
KGAATPVGTIKTVMCGSYPVIHAVAPNFSATTEAEGDRELAAVYRAVAAEVNRLSLSSVA
IPLLSTGVFSGGRDRLQQSLNHLFTAMDATDADVTIYCRDKSWEKKIQEAIDMRTAVELL
NDDVELTTDLVRVHPDSSLVGRKGYSTTDGSLYSYFEGTKFNQAAIDMAEILTLWPRLQE
ANERICLYALGETMDNIGSKCPVNDSDSSTPPRTVPCLCRYAMTAERIARLRSHQVKSMV
VCSSFPLPKYHVDGVQKVKCEKVLLFDPTVPSVVSPRKYAASTTDHSDRSLRGFDLDWTT
DSSSTASDTMSLPSLQSCDIDSIYEPMAPIVVTADVHPEPAGIADLAADVHPEPADHVDL
ENPIPPPRPKRAAYLASRAAERPVPAPRKPTPAPRTAFRNKLPLTFGDFDEHEVDALASG
ITFGDFDDVLRLGRAGAYIFSSDTGSGHLQQKSVRQHNLQCAQLDAVQEEKMYPPKLDTE
REKLLLLKMQMHPSEANKSRYQSRKVENMKATVVDRLTSGARLYTGADVGRIPTYAVRYP
RPVYSPTVIERFSSPDVAIAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRAT
FCPAKLRCYPKHHAYHQPTVRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTMDSAVF
NVECFKRYACSGEYWEEYAKQPIRITTENITTYVTKLKGPKAAALFAKTHNLVPLQEVPM
DRFTVDMKRDVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVH
TLFDMSAEDFDAIIASHFHPGDPVLETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDL
IEAAFGEISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAF
IGDDNIVHGVISDKLMAERCASWVNMEVKIIDAVMGEKPPYFCGGFIVFDSVTQTACRVS
DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKWFRTGLGAELEVALTSRYEVEGCKSIL
IAMTTLARDIKAFKKLRGPVIHLYGGPRLVR
NT seq
7296 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagtgcatgttgatattgaggctgacagcccattcatcaagtctttgcag
aaggcatttccgtcgttcgaggtggagtcattgcaggtcacaccaaatgaccatgcaaat
gccagagcattttcgcacctggctaccaaattgatcgagcaggagactgacaaagacaca
ctcatcttggatatcggcagtgcgccttccaggagaatgatgtctacgcacaaataccac
tgcgtatgccctatgcgcagcgcagaagaccccgaaaggctcgatagctacgcaaagaaa
ctggcagcggcctccgggaaggtgctggatagagagatcgcaggaaaaatcaccgacctg
cagaccgtcatggctacgccagacgctgaatctcctaccttttgcctgcatacagacgtc
acgtgtcgtacggcagccgaagtggccgtataccaggacgtgtatgctgtacatgcacca
acatcgctgtaccatcaggcgatgaaaggtgtcagaacggcgtattggattgggtttgac
accaccccgtttatgtttgacgcgctagcaggcgcgtatccaacctacgccacaaactgg
gccgacgagcaggtgttacaggccaggaacataggactgtgtgcagcatccttgactgag
ggaagactcggcaaactgtccattctccgcaagaagcaattgaaaccttgcgacacagtc
atgttctcggtaggatctacattgtacactgagagcagaaagctactgaggagctggcac
ttaccctccgtattccacctgaaaggtaaacaatcctttacctgtaggtgcgataccatc
gtatcatgtgaagggtacgtagttaagaaaatcactatgtgccccggcctgtacggtaaa
acggtagggtacgccgtgacgtatcacgcggagggattcctagtgtgcaagaccacagac
actgtcaaaggagaaagagtctcattccctgtatgcacctacgtcccctcaaccatctgt
gatcaaatgactggcatactagcgaccgacgtcacaccggaggacgcacagaagttgtta
gtgggattgaatcagaggatagttgtgaacggaagaacacagcgaaacactaacacgatg
aagaactatctgcttccgattgtggccgtcgcatttagcaagtgggcgagggaatacaag
gcagaccttgatgatgaaaaacctctgggtgtccgagagaggtcacttacttgctgctgc
ttgtgggcatttaaaacgaggaagatgcacaccatgtacaagaaaccagacacccagaca
atagtgaaggtgccttcagagtttaactcgttcgtcatcccgagcctatggtctacaggc
ctcgcaatcccagtcagatcacgcattaagatgcttttggccaagaagaccaagcgagag
ttaatacctgttctcgacgcgtcgtcagccagggatgctgaacaagaggagaaggagagg
ttggaggccgagctgactagagaagccttaccacccctcgtccccatcgcgccggcggag
acgggagtcgtcgacgtcgacgttgaagaactagagtatcacgcaggtgcaggggtcgtg
gaaacacctcgcagcgcgttgaaagtcaccgcacagccgaacgacgtactactaggaaat
tacgtagttctgtccccgcagaccgtgctcaagagctccaagttggcccccgtgcaccct
ctagcagagcaggtgaaaataataacacataacgggagggccggcggttaccaggtcgac
ggatatgacggcagggtcctactaccatgtggatcggccattccggtccctgagtttcaa
gctttgagcgagagcgccactatggtgtacaacgaaagggagttcgtcaacaggaaacta
taccatattgccgttcacggaccgtcgctgaacaccgacgaggagaactacgagaaagtc
agagctgaaagaactgacgccgagtacgtgttcgacgtagataaaaaatgctgcgtcaag
agagaggaagcgtcgggtttggtgttggtgggagagctaaccaaccccccgttccatgaa
ttcgcctacgaagggctgaagatcaggccgtcggcaccatataagactacagtagtagga
gtctttggggttccgggatcaggcaagtctgctattattaagagcctcgtgaccaaacac
gatctggtcaccagcggcaagaaggagaactgccaggaaatagttaacgacgtgaagaag
caccgcgggaaggggacaagtagggaaaacagtgactccatcctgctaaacgggtgtcgt
cgtgccgtggacatcctatatgtggacgaggctttcgcttgccattccggtactctgctg
gccctaattgctcttgttaaacctcggagcaaagtggtgttatgcggagaccccaagcaa
tgcggattcttcaatatgatgcagcttaaggtgaacttcaaccacaacatctgcactgaa
gtatgtcataaaagtatatccagacgttgcacgcgtccagtcacggccatcgtgtctacg
ttgcactacggaggcaagatgcgcacgaccaacccgtgcaacaaacccataatcatagac
accacaggacagaccaagcccaagccaggagacatcgtgttaacatgcttccgaggctgg
gcaaagcagctgcagttggactaccgtggacacgaagtcatgacagcagcagcatctcag
ggcctcacccgcaaaggggtatacgccgtaaggcagaaggtgaatgaaaatcccttgtat
gcccctgcgtcggagcacgtgaatgtactgctgacgcgcactgaggataggctggtgtgg
aaaacgctggccggcgatccctggattaaggtcctatcaaacattccacagggtaacttt
acggccacattggaagaatggcaagaagaacacgacaaaataatgaaggtgattgaagga
ccggctgcgcctgtggacgcgttccagaacaaagcgaacgtgtgttgggcgaaaagcctg
gtgcctgtcctggacactgccggaatcagattgacagcagaggagtggagcaccataatt
acagcatttaaggaggacagagcttactctccagtggtggccttgaatgaaatttgcacc
aagtactatggagttgacctggacagtggcctgttttctgccccgaaggtgtccctgtat
tacgagaacaaccactgggataacagacctggtggaaggatgtatggattcaatgccgca
acagctgccaggctggaagctagacataccttcctgaaggggcagtggcatacgggcaag
caggcagttatcgcagaaagaaaaatccaaccgctttctgtgctggacaatgtaattcct
atcaaccgcaggctgccgcacgccctggtggctgagtacaagacggttaaaggcagtagg
gttgagtggctggtcaataaagtaagagggtaccacgtcctgctggtgagtgagtacaac
ctggctttgcctcgacgcagggtcacttggttgtcaccgctgaatgtcacaggcgccgat
aggtgctacgacctaagtttaggactgccggctgacgccggcaggttcgacttggtcttt
gtgaacattcacacggaattcagaatccaccactaccagcagtgtgtcgaccacgccatg
aagctgcagatgcttgggggagatgcgctacgactgctaaaacccggcggcatcttgatg
agagcttacggatacgccgataaaatcagcgaagccgttgtttcctccttaagcagaaag
ttctcgtctgcaagagtgttgcgcccggattgtgtcaccagcaatacagaagtgttcttg
ctgttctccaactttgacaacggaaagagaccctctacgctacaccagatgaataccaag
ctgagtgccgtgtatgccggagaagccatgcacacggccgggtgtgcaccatcctacaga
gttaagagagcagacatagccacgtgcacagaagcggctgtggttaacgcagctaacgcc
cgtggaactgtaggggatggcgtatgcagggccgtggcgaagaaatggccgtcagccttt
aagggagcagcaacaccagtgggcacaattaaaacagtcatgtgcggctcgtaccccgtc
atccacgctgtagcgcctaatttctctgccacgactgaagcggaaggggaccgcgaattg
gccgctgtctaccgggcagtggccgccgaagtaaacagactgtcactgagcagcgtagcc
atcccgctgctgtccacaggagtgttcagcggcggaagagataggctgcagcaatccctc
aaccatctattcacagcaatggacgccacggacgctgacgtgaccatctactgcagagac
aaaagttgggagaagaaaatccaggaagccattgacatgaggacggctgtggagttgctc
aatgatgacgtggagctgaccacagacttggtgagagtgcacccggacagcagcctggtg
ggtcgtaagggctacagtaccactgacgggtcgctgtactcgtactttgaaggtacgaaa
ttcaaccaggctgctattgatatggcagagatactgacgttgtggcccagactgcaggag
gcaaacgaacggatatgcctatacgcgctgggcgaaacaatggacaacatcggatccaaa
tgtccggtgaacgattccgattcatcaacacctcccaggacagtgccctgcctgtgccgc
tacgcaatgacagcagaacggatcgcccgccttaggtcacaccaagttaaaagcatggtg
gtttgctcatcttttcccctcccgaaataccatgtagatggggtgcagaaggtaaagtgc
gagaaggttctcctgttcgacccgacggtaccttcagtggttagtccgcggaagtatgcc
gcatctacgacggaccactcagatcggtcgttacgagggtttgacttggactggaccacc
gactcgtcttccactgccagcgataccatgtcgctacccagtttgcagtcgtgtgacatc
gactcgatctacgagccaatggctcccatagtagtgacggctgacgtacaccctgaaccc
gcaggcatcgcggacctggcggcagatgtgcaccctgaacccgcagaccatgtggacctc
gagaacccgattcctccaccgcgcccgaagagagctgcataccttgcctcccgcgcggcg
gagcgaccggtgccggcgccgagaaagccgacgcctgccccaaggactgcgtttaggaac
aagctgcctttgacgttcggcgactttgacgagcacgaggtcgatgcgttggcctccggg
attactttcggagacttcgacgacgtcctgcgactaggccgcgcgggtgcatatattttc
tcctcggacactggcagcggacatttacaacaaaaatccgttaggcagcacaatctccag
tgcgcacaactggatgcggtccaggaggagaaaatgtacccgccaaaattggatactgag
agggagaagctgttgctgctgaaaatgcagatgcacccatcggaggctaataagagtcga
taccagtctcgcaaagtggagaacatgaaagccacggtggtggacaggctcacatcgggg
gccagattgtacacgggagcggacgtaggccgcataccaacatacgcggttcggtacccc
cgccccgtgtactcccctaccgtgatcgaaagattctcaagccccgatgtagcaatcgca
gcgtgcaacgaatacctatccagaaattacccaacagtggcgtcgtaccagataacagat
gaatacgacgcatacttggacatggttgacgggtcggatagttgcttggacagagcgaca
ttctgcccggcgaagctccggtgctacccgaaacatcatgcgtaccaccagccgactgta
cgcagtgccgtcccgtcaccctttcagaacacactacagaacgtgctagcggccgccacc
aagagaaactgcaacgtcacgcaaatgcgagaactacccaccatggactcggcagtgttc
aacgtggagtgcttcaagcgctatgcctgctccggagaatattgggaagaatatgctaaa
caacctatccggataaccactgagaacatcactacctatgtgaccaaattgaaaggcccg
aaagctgctgccttgttcgctaagacccacaacttggttccgctgcaggaggttcccatg
gacagattcacggtcgacatgaaacgagatgtcaaagtcactccagggacgaaacacaca
gaggaaagacccaaagtccaggtaattcaagcagcggagccattggcgaccgcttacctg
tgcggcatccacagggaattagtaaggagactaaatgctgtgttacgccctaacgtgcac
acattgtttgatatgtcggccgaagactttgacgcgatcatcgcctctcacttccaccca
ggagacccggttctagagacggacattgcatcattcgacaaaagccaggacgactccttg
gctcttacaggtttaatgatcctcgaagatctaggggtggatcagtacctgctggacttg
atcgaggcagcctttggggaaatatccagctgtcacctaccaactggcacgcgcttcaag
ttcggagctatgatgaaatcgggcatgtttctgactttgtttattaacactgttttgaac
atcaccatagcaagcagggtactggagcagagactcactgactccgcctgtgcggccttc
atcggcgacgacaacatcgttcacggagtgatctccgacaagctgatggcggagaggtgc
gcgtcgtgggtcaacatggaggtgaagatcattgacgctgtcatgggcgaaaaaccccca
tatttttgtgggggattcatagtttttgacagcgtcacacagaccgcctgccgtgtttca
gacccacttaagcgcctgttcaagttgggtaagccgctaacagctgaagacaagcaggac
gaagacaggcgacgagcactgagtgacgaggttagcaagtggttccggacaggcttgggg
gccgaactggaggtggcactaacatctaggtatgaggtagagggctgcaaaagtatcctc
atagccatgaccaccttggcgagggacattaaggcgtttaagaaattgagaggacctgtt
atacacctctacggcggtcctagattggtgcgttaa
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integrated database retrieval system
