Viruses: 932220 Help Entry 932220            CDS       T40000                                  Symbol ORF-I, GarVCgp1 Name (RefSeq) Garlic virus C; replicase   KO K26615   Alphaflexiviridae RNA-directed RNA polymerase Virus 12431  Garlic virus C Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf Viral_helicase1 RdRP_2 AAA_16 Motif Other DBs NCBI-GeneID:  932220 NCBI-ProteinID:  NP_569132 RS:  NC_003376 UniProt:  O55601 LinkDB All DBs Position NC_003376:100..4752 Genome browser AA seq 1550 aa AA seqDB search MTTVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSP FATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLLKRGPTDDAFQNYCHEP KDVLRFGLTNPHTCPTVTTSCAVISDTLHFMSSQQLWTLFARNPALQRLYGTLVLPVEAL HKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWLSTAQIGSGLNHLSIEKIE TKAAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYPTEANVQRPYPHVFIKRLQL YCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANYLLFITGMQQTSDYQSPLMES LFGKLCLSIRARIREFFQNLMGKSSYAALLTVTDVHPVYFTTKPLRRPICGEQWFEAEEA EEDPSVPSPTGYQRPSPDDLDLLAEFEQQNLLNGAEGQRERQGEHAHGPNQNQTTSTQPP PHQPSPHDAAQSGSSSEARKTESSDEPEVSCKDEEDLGSGTSDGHVTDWSDSESDCSDDK HDQIFDSLSLFDTADLPDLEEVEEEPDAAHTTQTPTPDVTDESSAVQHTQTPHIAESLVD SDVFVGETIDDETQQPDTVPAVQTRENSRSTTVALEPFDEETIEILKIHGFTNLKPQHDG EFQIAPVFYNRLAKHIPTYEGITTTTQSQFIAMAQALKRNCYRYKLDAKRATAFMSDVKN NLTGLVLPKLDRDLLTSWVALAENAKRSVGLIVIHGAGGAGKSRALQELLRHGKMDINEV NIVVPTINLAVDWKRKLPSMDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYIDAYLAIK FNVELVILTGDQRQSVFHNDKRDSQIALLNSNTDHYKRYCDYYLNATHRQPRRLANPIKV HAEREVGGAVKHATLIPTNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTLPHLSIVLDK DTPLCSDEVLYTALSRASETITFINTHSNNKEFLDKLDSTPYLKTLISGVREDEQAGREQ PPPEPSVRDSPTKTHIPVANDSVQLEGKIEAMEDKDTRELWSGEEKTNLMQTQDPVVQLF PHQQAKDEALFKITINERIRLATPETNRKALTDTLNAGDLLFEAYASFMNVPKETQAFDK RLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFPENAIALFNKSQWVKKLEKVGCRFKAG QTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYT SDYTQYDQSQDAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPT FDANTECNIAYDALRFQLDSTVKACYAGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTN KPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFD EDELSKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDPRAIKVSTFESDRIILPLD IIDDHFSKSGKTDRAEMTEESNRRAVEIGATTNVARQDPTLTDLFPDAFK NT seq 4653 nt NT seq  +upstreamnt  +downstreamnt atgaccactgtgcaaaaactcctcgaccaaatttctgacccaaatgcgcgagcggcttat tcccaggaatgcctttcagctgcgaagaatgcagctaccaaggcaatgaccatagcccct tacgctgtcacacagacagaagcactcaccctagagcgcattggaattactacttcacca tttgccaccacttcacacacacacgcggctgataaaataattgagaatgattgtcttgag atcatcagccattacctacctaaagaccctattactctgatacaattaaaacgatctaaa ttgcatctgctgaagagggggcccacagatgatgctttccagaactattgccacgaacca aaggatgtattgagattcgggctaaccaacccacacacgtgccccacagtgacaacatct tgtgctgttatctcggatacactgcatttcatgtcatcacagcagctctggacattattt gctaggaatccagcactacaaagactttacggcacccttgtgttgccagttgaagctctc cacaaactcccaagtctatttccggaaatctacaaactagaatactacgataaacacttt gcctatatgcctgggggccatggtggaggagcctatattcactcatatggcaccctcaag tggttgagcactgcccaaattggttcgggattaaatcacctgagtatagaaaaaattgaa accaaggcagcacaccacatcatggttattcaacgaagacggccagagctaccatggcct ctgccgcccgtgtgggtttaccacgcttccgactacgtcaaattgcccgagatcttctac cccacggaagctaatgtccaaagaccatacccacatgtttttattaaacgcctacaactt tattgcttttctgtcaaagcagtttcacttcgagacatatttgcaaaaattcgtcaagta ctaccaaccgaagagttagccaggttctccacagctgaccttatacgattggcaaattat ttacttttcataactgggatgcagcaaaccagtgactaccagtccccattgatggaaagt ttattcgggaaattgtgcctatctatacgagcgagaattcgcgaatttttccaaaacttg atgggcaaatcatcctacgcagcattgctaactgtgacggatgtgcacccggtgtacttc acaaccaagccactccgtcgacccatctgtggcgaacagtggttcgaagcggaggaagcc gaagaagaccccagtgtaccatcacccacagggtaccaaagaccctctcccgacgacttg gacctactggctgagttcgagcagcagaatttactaaacggcgcagaaggccaacgggaa cgccagggtgaacacgcgcacggcccgaatcaaaaccagactacttcaacccagccacca cctcaccaaccaagtccacatgatgcggcacaatcgggcagcagctcggaggctcggaaa actgagagctcggatgaaccggaagtaagctgtaaagatgaggaagacttgggcagcggt acatctgacggccacgtcactgattggagcgacagcgagagtgactgcagtgatgacaag catgaccagatttttgacagcctctcactgtttgacactgctgacttgcccgatctagag gaagtagaagaggaaccggacgcggctcacacaacgcaaacaccaacaccggacgtgact gacgaatcgagtgctgtccaacacacgcaaacaccacatattgcagagtctcttgttgac agtgacgtgttcgttggagaaaccattgatgacgagacccaacaaccagacacagtgcca gccgtgcaaacgcgagagaacagcagatcgacaacggtcgccctggaacctttcgatgag gaaacaatcgaaatactcaaaatccacggtttcaccaacctcaaaccacaacatgacgga gaattccagattgcacccgttttctacaatcggctagctaaacacatacccacctatgaa ggcataaccaccacaacccagtcccaattcatagctatggcgcaagcactgaagaggaat tgctaccgttataaattggatgctaagcgtgccacagcattcatgtctgacgttaaaaac aacctaactggtttggtgctacccaaactcgacagggatttgctaacgtcttgggtagct cttgcggaaaatgctaagaggagtgttggacttatagtcattcatggtgcaggtggagct ggaaagagtagggcactgcaagaactgctgaggcatgggaaaatggacatcaatgaagtt aatatcgtggtacccaccatcaacctcgctgtggattggaaaagaaaactaccaagcatg gatcctagaagaatcatgacttttgaaaaagcgtgcgaacgtgagggcaaatccatcgtc atcatggatgattacggaaaattacctgcgggctatattgacgcttacctggccatcaaa ttcaacgttgagttggtaattctcactggagaccagagacaatccgttttccacaatgac aagagagactcgcaaatcgcgttgctaaactctaacacggatcactacaaacgatactgc gactactatctcaatgcaacgcatcgccaaccccgacgacttgccaacccaatcaaagtc cacgcagaaagagaagtaggtggcgccgttaagcacgcgacccttatacctaccaatgcc atgacgctcgtaccagctttcagaagtcagtcgctgttaactgacttaggcagacaagcc atgacttacgcgggttgccagggcctcacgcttcctcacctctccatcgttttagataag gatacccctttatgctccgatgaagtgctatatacagcactgtcacgcgcctcagaaaca atcactttcatcaacacgcattccaataacaaagagtttttggacaaactcgactcgaca ccatatctcaaaactctgatatcaggagtgcgggaagacgaacaagctggcagagagcaa ccaccaccagaaccatctgtgcgtgacagccccacaaaaactcacatcccagttgccaat gacagtgtgcaactcgaaggaaaaatagaagccatggaggacaaggacacccgcgaactt tggtcgggtgaagaaaagacgaatctcatgcaaacgcaggacccagtggtgcaattattt ccacaccaacaagcgaaggatgaggcgctctttaaaatcaccataaatgagagaattcgc ttagccactcctgagactaaccggaaagcactcactgacacactcaatgcgggggacttg cttttcgaagcgtacgcaagcttcatgaacgtacccaaagaaactcaagctttcgataaa cgcttgtgggcacattgcagacaactagccttgcgcacctatctgtccaagccgacagca aatcttcagcaaggagccaagcgacaggatccagacttcccggagaacgcgatcgctctg ttcaacaagtcacaatgggttaagaaattagagaaagttggctgtagatttaaggcaggg caaaccatctcagcattcaagcaatcaacagtgttgctcaccacaacaatggccctctat ctgcggaaaaagagggaaggtcaccaacccgacaacgtgtttataatgtgtgagaaaacc cctgagcagttcaactcattcgtgttaacaaagtgggacttcactagacctaactacacg tctgactatacacagtacgaccaatcccaagatgcggctttcctcaacttcgagcttagg aaagcaaggcactttggcgtgccggaggaagtggtggatttctacgctttcatcaaaaca cacgccaagacatttctgggtaaccttgccgtgatgagattaagtggggaaggaccaacg tttgatgctaatacagagtgcaacatcgcttatgacgcactcaggtttcaacttgattcc actgtgaaagcttgctatgcaggggatgacttggttcgggataaagcatgtgacgaacga cccggttggaaatactcagagcccttgttttcactcaaagccaaacccctagtcacaaac aaaccagatttctgtgggtggagactgactaagtatggcattgtaaaatcccccgtgcag ttataccagtcactccagttagcgctgagactcggaaaggtagaagaggttaaaagaagc tatgccatcgactatctatttgcataccgactgggtgatcaactctatgacatattcgac gaggatgaactttcaaaacaccaattagtcaccagaacgttaatcaagaaaggtatgcaa cctccaagctcaggagagcacttgcccactttccatgtgacttccgacaggcttatcaga gacccaagagccatcaaggtgtcgacttttgagtctgatagaattattttgccactcgac ataatagatgaccacttctcgaaaagtgggaaaaccgaccgtgcagaaatgactgaggaa agcaatcgccgcgctgtagaaattggtgcaacaacgaacgtcgcgcgtcaagacccgaca cttacagacttattcccagacgcatttaaatag

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