Viruses: 934906
Help
Entry
934906 CDS
T40000
Symbol
SCMVgp1
Name
(RefSeq) Sugarcane mosaic virus; polyprotein
Virus
12224
Sugarcane mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
RdRP_1
Poty_PP
Peptidase_C4
Potyvirid-P3
Peptidase_S30
Helicase_C
DEAD
Flavi_DEAD
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
934906
NCBI-ProteinID:
NP_570724
RS:
NC_003398
UniProt:
Q8QXN5
LinkDB
All DBs
Position
NC_003398:150..9341
Genome browser
AA seq
3063 aa
AA seq
DB search
MAGSWTHVTYKWQPDVNNARDVKRVMEMFAAKHQHYTEEQRLAHNSKLLRKACVTSAEFI
KPAQKPKCHQTWVEKCDHNPTEHFVYQRSTPEKKVLSTKPKTTSVTKLIRDVLEISKGSG
IKIELIGKRVKRKTQLSIRQHNGKDFLHCKTRHENGLFKRKDIDINVKWLPTIEAIAKCY
STVNAEELQSLNRGSSGLTFMQNDELFIVRGRMHGEIVNSLHENKHVMEIEHYADPQANS
FWKGYTDAYVGNRNISTTHTEHTPTINLEECGKRMALLEILFHSTFKITCKTCNIDDLEL
SDDEFGAKLYNNLQRIEERQREYLAKDQKLLRMIHFVKDRCNPKFSHLPLLWQVAETVGH
YTDNQSKQIIDISEALIKVNTLTPDDAVKASVALLEVARWYKNRKESLKTDTLDSFRNKI
SPKSTINAALMCDNQLDKNANFVWGNREYHAKRFFANYFEAIDPTDAYEKHVTRFNPNGQ
RKLSIGKLVIPLDIQKIRDSFVGLSINKQPLSKACVSKIDGGYVYPCCCVTTEFGKPAYS
EIIPPTKGHITIGNSVDPKIVDSPNTTPPSMYIAKDGYCYINIFLAAMINVNEESAKDYT
KFLRDELVKRLGKWPKLKDVATACYALSVMFPEIKNAELPPILVDHESKSMHVIDSYGSL
SVGFHILKASTVGQLIKFQYESLESEMREYIVGGTLTQQTFNTLLKTLTKNMFKPNKIKQ
IIEEEPFLLMMAIAPPTVLISLYNNCYIEQAMTYWIVKNQGVAAIFAQLEALAKKTSQAE
LLVLQMQILEKASNQLRLAVTGLNHVDPAKRLLWSHLEAMTTRSEMNKELIAEGYALYDE
RLYTLMEKNYVDQLNQSWAELSYCGKFSAIWRVFRVKKYYKPSLTVRKSVDLGAVYNISA
THLISDLVQRSRDRVSSTLTKLRNGFYDKMEKARVSAVRTVYWFIPDIFRLVHIFIILSL
LTTIANTIVTTMNDYKKLKKQQREDEYEAEINEVRKIHANLMKERNDNLTCDQFIEYIRQ
THPRLIEATLDLTHTGVIHEGKSNLETNLEQAMAVGTLLTMILDPQKSDAVYKVLNKMRT
VINTIEQNVPFPTVNFTSILTPPVTQQSVDVDEPLTLSTDKNLTIDFDTNQDLPADTFSN
DVTFEDWWANQINNNRTVPHYRLGGKFVEFTRENAAMVSIELAHSNIEKEFLLRGAVGSG
KCTGLPYHLSMRGKVLLIEPTRPLAENVCRQLQGPPFNVSPTLQMRGLSTFGCTPITIMT
SGFALHMYANNPDKISEYDFIIFDECHIMEAPAMAFYCLLKEYEYRGKIIKVSATPPGRE
CEFSTQHPVDIHVCESLTQQQFVMELGTGSTADATKYGNNILVYVASYNDVDSLSHALTE
LKYSVIKVDGRTMKQNTTGIVTNGTSSKKCFVVATNIIENGVTLDVDVVVDFGLKVTAEL
DVDNRAIMYKRVSISYGERIQRLGRVGRNKPGTVIRIGKTMKGLQEIPAMIATEAAFMCF
AYGLKVITHNVSTTHLAKCTVKQARTMMQFEFSPFVMADLVKFDGSMHPQIHEALTKYKL
RDSVIMLRPNAIPKVNLHNWLTARDYNRIGCSLDLEDHVKIPYYIRGVPDKLYGKLYEII
LQYSPTSCYGRLSSACAGKVAYTLRTDPCSLPRTIAIINALITEEYAKRDHYRNMIANPS
SSHAFSLNGLVSMIASRYMKDHTKENIDKLVRVRDQLLEFQGTGMQFQDPSELMDIGALN
TVIHQGMDATAACIGLQGRWNASLIQRDLMISAGVFTGGILMMWYLFTKWSKTEVSHQGK
NKRSRQKLRFKEARDNKYAYDVVGSEEVLGENFGTAYTKKGKGKGTKVGLGVKQHKFHMM
YGFDPQEYNLIRFVDPLTGATLDEQIHADIQLVQEHFSVIRDEAVANDTIERQHIYANPG
LQAFFIQNGSANALRVDLTPHSPLRAVTNNNIAGFPEYEGTLRQTGTALQIPVNQVPAAN
EAGVAHESKSMMAGLGDYTPISQQLCLVQNDSDGIKRNVYSIGYGSYLIAPAHLFKYNNG
EITIKSSRGLYKIRNSVEIKLHPIAHRDMVIIQLPKDFPPFPMRLKFSKPSRESRVCLVG
VNFQQNYSTCIVSESSVTAPKGNGDFWKHWISTIDGQCGLPLVDVKSKHIVGIHSLASTS
GNTNFFVAMPEDFNDYINNLVQTNKWEKGWHYNPNLISWCGLNLVDSAPKGLFKTSKLVE
DLDMSVEEQCEVTKTWLTECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAKA
YFAPLLGKYDKSRLNRAAFIKDISKYAKPIYIGEINYDVFEKAIQRVIKILRDVEMQQCT
YVTDEDEIFQSLNLNAAVGALYTGKKKDYFKDFSNEDKSEIIMRSCERLYNGHLGVWNGS
LKAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGG
WNRLLEKLPDGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWNLGEQMLRNLYTEIV
YTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGVKEEEIDNCCRMFAN
GDDLLLAVHPDFEHILDGFQNHFGNLGLNFEFTSRTRDKSELWFMSTRGIKCEGVYIPKL
EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFANLAKE
GLAPYIAETALRNLYLGTGIKEEEIEKYFKQFAKDLPGYIEDYNEDVFHQSGTVDAGAQG
GGSGSGTTPPATGSGTGTRTPSTGTPAQGNTPPASGGSSGNNGGGQSGSNGTGGQAGSSG
AGGQRDKDVDAGSTGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRA
TKEEFDRWYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGDEQRVFPL
KPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEM
TSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQ
QHH
NT seq
9192 nt
NT seq
+upstream
nt +downstream
nt
atggcgggctcttggactcacgtgacatacaagtggcaaccagatgtcaacaacgcacgt
gatgtgaaaagagtgatggagatgtttgcagcaaaacatcaacattacactgaggagcaa
aggcttgctcacaacagcaagctattaaggaaggcttgtgtcactagtgctgagtttatt
aaaccagcacagaaaccaaaatgtcaccagacatgggttgaaaagtgcgaccacaacccc
acagagcactttgtttatcaacgctctacacctgagaagaaagtgcttagcaccaaacct
aagacaacctctgttacgaagttaatcagggatgtccttgagatttcgaagggcagtggg
attaaaattgagttaattggcaagcgtgttaaacgtaagactcaattgtccataaggcaa
cacaatggcaaagacttcttgcactgcaaaaccaggcatgagaatggcctgtttaaacgc
aaggacattgacattaatgtcaagtggttgcccaccattgaagccattgcaaaatgctac
agcacggtgaatgcggaagaactgcaaagtctcaatagaggcagtagtggtcttacattc
atgcaaaacgatgaattgttcatcgtgcgtggaaggatgcatggtgagattgtcaatagt
ttacacgaaaataagcacgttatggaaattgaacactatgctgatccacaagcaaacagt
ttctggaagggttacacagatgcatatgtcgggaatagaaacatatctaccactcacaca
gagcacacaccaactattaatttagaagagtgtggcaagagaatggcactcttagaaatc
ttattccattcaactttcaaaataacatgcaaaacgtgcaatattgatgacctcgaatta
tcagatgatgaatttggggccaagttatacaataatctgcaacgcattgaagaaaggcaa
cgtgaatatcttgctaaagaccaaaaacttttacgcatgattcactttgtgaaggaccgg
tgcaatccaaaattttcgcacttgcccttgctatggcaagtagcagaaacagtaggacat
tatactgataaccaatcgaagcagataattgatatcagtgaggcgctcataaaagttaat
accttaactcctgatgatgcagtaaaggccagtgtagcactattggaagttgcacgatgg
tataaaaatcggaaggaatcactcaaaacagacacactagactcattccgaaacaaaatt
tcaccaaagagcacgatcaacgcagcattgatgtgcgacaatcaattagataagaatgct
aatttcgtatggggaaacagagaatatcatgcaaagcgattctttgccaattattttgaa
gctatagacccaactgatgcgtatgaaaaacacgtcacacgcttcaatcccaatggacag
cggaaattatcaattggcaagttagtaattccactagatatccagaaaattagagattcg
tttgttggcttatcgataaataaacaaccattgagcaaagcttgtgtgagcaaaattgat
ggaggctacgtatatccatgttgctgcgttacaacggaattcggaaaaccagcatattct
gagataatacctccaacaaaaggacatatcacgattggaaattcagtggacccaaaaata
gtagattcgccaaacacgacaccaccgagtatgtacatcgcaaaagatggatattgttat
attaacatattcttagcagcaatgataaacgtcaatgaggaatccgcgaaagactacacg
aagttccttagagacgagttggtgaaacggctcggcaagtggcctaaactgaaagatgta
gcaacagcatgttacgctttatcagtaatgttcccagaaatcaagaatgccgaattacca
ccaatattggttgatcatgagagcaagtcaatgcatgtcattgattcatatggatcactc
agtgttggattccacattctaaaggcaagtaccgtgggacaactgataaaattccagtac
gaatcattagaaagcgagatgcgtgaatacatagtgggaggtaccttgacacaacaaact
tttaacacacttctcaagactctcacaaagaacatgttcaagccaaataaaattaaacag
ataatagaggaagaacctttcctactaatgatggcgattgcaccccctaccgtgcttatc
tcactgtataacaattgctacatcgagcaggcgatgacatactggattgtcaagaaccaa
ggagtcgcggcaatttttgcacagttggaggctttggcaaagaaaacctcccaagcagaa
ctattagttctgcaaatgcaaatactcgaaaaagcttcaaaccagctaagacttgcggtt
accggacttaatcatgtcgatccagcgaaacgacttctatggtctcacctagaagccatg
acaacacgatcggaaatgaataaggaactcatagcggaaggttatgcactatatgatgag
cgtctatataccctaatggaaaaaaattatgtagatcaattaaaccagtcatgggcagaa
ttatcatactgtggaaaattttcagcaatatggcgtgtgttcagagtcaagaaatactac
aagccatctttaaccgtgagaaaaagcgtagatttaggcgctgtttacaatatatcagct
acgcatctaatatcagatttagtgcagagaagtcgagatcgagtcagctctactttaacc
aaactccgcaacggtttctatgacaaaatggaaaaagcgagagttagcgcagtgaggact
gtatattggttcatacccgatatatttagactagtccacatctttataattctaagttta
ttaactactatagccaatacaatagttacaaccatgaatgactacaaaaagttaaagaag
caacaaagagaggacgagtatgaggccgaaattaatgaggtgcggaaaatacatgccaat
ttgatgaaggagcgcaatgataatctgacatgcgatcagtttattgaatacatacgccaa
acacacccacgcctcattgaagcaactttggatttgacacatacaggcgttattcacgag
ggtaaatccaacttggaaacaaaccttgaacaggcgatggcagtgggaactttactcact
atgatactcgacccacaaaagagcgatgcagtttacaaggttcttaacaaaatgcggaca
gtgattaacacaatcgaacagaatgtgccattcccaacagtcaattttacaagcatctta
acgcctcctgtaacacaacaaagtgttgatgttgatgaaccattgacactaagtactgat
aagaacctgactatagattttgatacaaatcaagacttgccagcggatacatttagtaat
gacgttacatttgaggattggtgggctaatcagattaacaacaacagaacagtgccacac
taccgacttgggggaaaatttgtagaattcacaagagaaaatgcagcaatggtcagcatt
gaactcgctcactcaaacattgaaaaagaattcttactcagaggagctgttggatcagga
aaatgcacaggcttaccataccacctcagtatgcgtggaaaagtgctattaatagaaccc
actcgaccattagctgaaaacgtttgcaggcaattgcaaggacctccatttaacgtgagc
cccactttacaaatgcgaggtttgagcacatttggctgcactcccatcacgataatgacg
tctggattcgcattgcatatgtatgctaacaaccctgacaagatctctgaatatgacttc
atcatttttgatgaatgtcatatcatggaagcacctgcaatggcattctattgtttgctt
aaggagtacgaataccgaggaaagataataaaagtttcagcaacaccaccaggacgagaa
tgtgagttttcaacccaacatccagtggatatacatgtatgtgagagcttgacacaacag
caattcgtcatggagcttggaacagggtcaaccgctgatgcaaccaagtacggtaataac
atattagtgtacgttgcaagttacaatgacgtagattctttatcccatgctctaactgag
ctcaagtattcagtaatcaaagttgatggaagaacaatgaagcagaacaccacaggaatt
gtaactaatggaacatccagtaagaaatgcttcgttgtagctacaaatatcattgagaat
ggtgtgacgctagacgttgatgtcgttgtcgactttggacttaaagtaacagccgaactg
gatgttgataacagggcaataatgtataaacgtgtgagcatatcttatggcgagcgtatt
cagagacttggaagagttggaaggaacaagcccggaacagttatccgcatcgggaaaaca
atgaaaggtttgcaagaaattccagcgatgatcgccactgaagcggctttcatgtgtttc
gcatatggactgaaggtcataacgcacaatgtatcaacaacacatttggcaaaatgcacc
gttaaacaagccagaactatgatgcagtttgagttttcaccatttgtaatggccgatcta
gtaaagtttgatggttctatgcacccacaaatccatgaagcattaactaagtataaatta
cgagattctgtaattatgctaagaccaaacgcaataccaaaggtaaatcttcacaattgg
ttaacggctcgtgattacaacagaataggctgctcattagaccttgaagatcatgttaaa
ataccatattacatacgaggagttcctgacaagttgtacgggaagttgtatgaaattatc
cttcaatacagccctacaagttgctatggaagactatcgagcgcttgtgcaggtaaggta
gcatatacactgcgcactgatccttgttcgttaccaagaacaatagctataatcaacgca
ttaatcactgaagagtatgcaaagagggatcattacagaaacatgatagcgaacccttcg
tcatcgcacgccttttcacttaatgggctggtatccatgatcgcttctcgatacatgaaa
gatcacacgaaggaaaacattgataaacttgtaagagtgcgcgaccagctacttgaattc
caaggcacaggtatgcaatttcaagatccttcagaattgatggacattggtgctctaaac
acagttattcaccaaggaatggacgctacggctgcttgtattggactgcaagggcgctgg
aacgcttcgcttattcaacgcgatttgatgatatcagcaggggtcttcacaggaggaatt
ctcatgatgtggtatcttttcacaaaatggagcaagacagaagtgtcacaccaaggaaag
aacaagcgcagtcggcaaaagctacgattcaaagaggctcgtgataataaatatgcctac
gatgtagtaggatcagaggaagttcttggtgagaatttcggaactgcatacactaagaaa
ggaaaaggaaaggggacaaaagttggccttggagtcaaacagcacaaatttcacatgatg
tacgggtttgatccacaagaatacaacttaatccgcttcgtggatcctttaacaggtgcg
acactagacgagcaaatccatgcagatatacagttagtgcaagagcacttcagcgtcatc
agagatgaagcagtagcaaatgacacaattgaaagacagcacatttacgctaatcctgga
ttacaagctttcttcatacaaaatggatcggcaaatgcactgagagttgatttgacgccg
cattcacccttgcgtgccgtgaccaataacaatatagcaggcttcccagagtatgagggt
acacttcggcaaacaggaacagctctacaaatacccgtgaatcaagttccagctgcgaac
gaagcgggggtggcacatgaatcgaaatcgatgatggcagggctaggtgactacactcca
atatcacagcaattgtgcctagttcaaaatgactcagatggaatcaaaaggaatgtatat
tcaattggatatggatcatatctcattgcgccagcacatttatttaagtataataatggc
gaaataacgatcaaatcatcacgaggcctatacaaaatcagaaattcagtcgaaataaag
ttgcatcccattgcgcatagagacatggttataattcaacttccaaaagattttccacca
ttcccaatgcgtcttaagttttcaaaaccatctagagaatcaagggtgtgcttagtcgga
gtgaattttcagcagaactatagcacatgtatcgtatcggagagtagcgtcacagcacca
aaaggaaacggagatttctggaaacactggatatccacaatagacggacaatgcggtctc
ccattagtagatgtcaagagtaagcacatagttggaatacacagtcttgcatcaactagt
ggaaatactaacttctttgtcgccatgcctgaagacttcaatgactacatcaataatctt
gtgcaaaccaacaagtgggaaaaaggatggcattacaacccaaatctcatttcatggtgt
ggtctcaacctagttgactcagctccaaagggtcttttcaaaacttcaaaattagtagaa
gaccttgatatgagcgttgaagaacaatgtgaggttacaaagacatggctcacggagtgt
attcaggataatttacaggttgtcgcaaaatgtccaggccaacttgtcaccaagcacgtt
gtcaaaggcccatgtccacactttcagctatacctgtcaacacatgatgaagctaaagca
tactttgcaccattactcggaaaatacgacaagagcagattaaacagagcagcttttatc
aaagacatttcaaaatatgcaaaaccaatctacattggagaaatcaattacgatgtcttt
gaaaaggctatacaacgtgtaattaaaattcttagagacgtggaaatgcagcaatgcacg
tatgtaacggacgaggatgaaatattccagtcacttaacctcaacgctgcagttggcgcc
ttatacacaggaaagaagaaagattatttcaaggatttttcaaatgaggacaaatcggaa
attatcatgagatcctgtgagcgtttatacaacggacaccttggcgtgtggaatggttca
ctcaaagctgaaataaggcctatagagaaaacaatgttaaataagactcggacttttaca
gcagcaccattagaaactttacttggtggcaaggtctgtgttgatgatttcaacaaccaa
ttctactcgcaccacttagaaggtccttggacagttggaataacaaagttttatggtggg
tggaaccgtttgttggaaaaattgccagatggttggatatactgcgacgccgatggatca
cagttcgacagctctttgacaccatatctcatcaacgccgtattacacattcgattacaa
ttcatggaagaatggaacttaggagaacaaatgttgcgaaacttgtacactgaaatcgtg
tacacaccaattgcaacaccagatggatctgtaatcaagaaatttaaaggtaataatagt
gggcaaccgtcaacagttgtagacaacacactcatggtgatattagcatttaattatgca
atgttatcaagtggtgttaaagaggaagaaatagacaattgctgccgaatgttcgccaat
ggtgatgatttgctacttgcagtgcatccagatttcgaacacatactggacggatttcaa
aatcactttggaaacctaggtctcaactttgagtttacatcacgaacaagagacaagtca
gagttatggttcatgtccacacgaggtatcaaatgcgaaggcgtctatataccaaaactt
gagaaagaaagaatagttgccatactcgagtgggatcggtcaaacttacctgagcaccgt
ctcgaagccatttgtgcagccatggtagaggcatggggatacccagaccttgtccaagag
atacggaaattttatgcgtggcttctcgaaatgcaaccatttgcaaatttagctaaagag
ggcctagcaccatatatcgctgaaactgcactcagaaatctgtatttgggcacagggatc
aaggaagaagagattgagaaatatttcaaacagtttgccaaagatctccctggttatata
gaagattacaacgaagatgttttccatcaatccggaactgtggatgcaggagcccaagga
gggggaagtggatctggaacaacgccaccagcaacaggtagtggaacaggaacaagaaca
ccatctactggaactccagcacaaggcaacacacctccagcatcaggtggatcatcagga
aacaatggaggtggccaatcaggttcaaacggcactggaggccaagcaggctcaagcgga
gcagggggtcaaagagacaaagacgttgacgctggctcaacagggaagatatcagtgcca
aagcttaaggcaatgtcgaagaaaatgcgcctgccaaaggcgaaaggaaaagacgtttta
cacttagatttcctgttaacatataaaccacaacagcaagatatatcaaacactagagca
actaaggaagagtttgatagatggtacgatgccataaagaaggagtacgaaattgatgac
acacaaatgacagttgtcatgagtggtctcatggtatggtgcatcgaaaatggttgctca
ccaaacataaacggaaattggacgatgatggacggagacgaacaaagggtttttccatta
aagccagtcattgagaacgcatctccaactttccgacagataatgcatcattttagtgat
gcagctgaagcgtatatagagtaccgaaactctacagagcgatacatgccaagatacggt
cttcagcgaaatctcaccgactatagcttagcgcggtatgctttcgatttctatgaaatg
acttcgcgcacaccagctagagctaaggaagcccacatgcagatgaaagccgcagcagtt
cgtggttcaaacacacgtctgttcggtctggacggaaatgtcggcgagactcaggagaat
acagagagacacacagctggcgacgttagtcgcaacatgcactctctgttgggagtgcag
cagcaccactag
DBGET
integrated database retrieval system
