Viruses: 935905
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Entry
935905 CDS
T40000
Symbol
ClYVVgp1
Name
(RefSeq) Clover yellow vein virus; polyprotein
Virus
12198
Clover yellow vein virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
RdRP_1
Poty_PP
Potyvirid-P3
Peptidase_C4
Peptidase_S30
DEAD
Helicase_C
Trypsin_2
Flavi_DEAD
ResIII
Peptidase_C3
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
935905
NCBI-ProteinID:
NP_613273
RS:
NC_003536
UniProt:
O92645
LinkDB
All DBs
Position
NC_003536:191..9409
Genome browser
AA seq
3072 aa
AA seq
DB search
MAQIMIGSIMVPLNKESSVSESNINISSIIPKTKTSTHIEAGLKNMSFNLQPTTDPFKAI
TLACKERVAKFGDMVFKTRRGITTMVPKPARLVEEEKRAAEALKRFMEVEWTLEEIDPDA
EYQVPDLRQRGSQVSFKSPYHKRTPKTAEKLKVIKPVQGSKKIQHVTNALLKIVKNNNLI
LEVADRNKKANHATFSKYGSTYGMHIIVNHMVRKRRSVDVRLNGLMASIAKQEAIGFEKL
NVSTLREGHSGLVLQTKTVPNCHFNNDDITIVRGVIKSHGVPCLVDARQNLNHQQLSRIR
EFSAGDLFWKGYNQTFIDNRPKDIGHTCTSDLNVIQCGSVMALMTLALFPCGRITCKECV
EDFHNQNNRERYARTERFLSQAMTLLAQTYPEFKHSRDILQLFRERLSMENSNAEACVET
NKAITSLTETPFNHIRKINEVLLRYGSLTNDEVGVASASLLEITRYIRNRTDSIQRNDLS
KFRNKISSKTHINLDLMCDNQLDKNANFMWGQRAYHAKRFLSNYFSVIDPSEGYDKFINR
KLPNGTRELATGRLIVPTNFESFRDQMKGTMVDNRPIGKECVSRVKGAFCYPCCCTTDDI
GNAILSEFKMPTKYHLVLGGQEAAKYIELPSDSSGMMYIAKDGYCHINIFFAMLVNVSED
KSKDFTKMVRDQIMPKLGQWPTMLDVATACWYLTVWFPDTLSAELPRILVDHKLSTMHVL
DSYGSISTGYHVLKANIVSQLIKFASDDLESDLKFYRVGGKSLTGQVIQFDTKMLISSIY
RPRQMEKIINEEPFVLVLAMQSPSVLLALFNSASLEKAVEVWLHKDMRVSHVMTMLALLA
AKVSAAKMVNLQMEIIEASAGHFLAAMDTIHKPMHSINTANIFLMNLEEGRSTDRTIDEL
GFHSLKKSSQVLMEKIWAEDLEQQWLGLRLSQKFYLIKQSWKQRAKYSKILAQRDELGAS
DKFSASLRLSVTSIKNQAISCKKRMVITSKKCLFSVQKMVAIQALRVFKRCMSNMVDVLN
VLATITLLMGILSQVRSHIKTVTSYKRVSKEAKVQDDLYRINDYYELLKARDRYTVDEFR
SKLESLNPELLETFDEYYKEPKWFVMESKSNDMVALEKVVAFTALVMMIFDGERSDCVYK
ILNKLKGIISTTTQDGYKFQSLDDIKPMLEDKKGVIDFEIDEGDSKIICSNQTTFVQWWD
NQLQNGNVITHYRTEGHFMEFTRDTAQEVAHTIAHSDFKDILVRGAVGSGKSTGLPSYLS
EKGKVLMLESTRPLAENVFKQLKSDPFYKNPTLRMRGTTSYGSTPITIMTSGFALHFYAN
NPQLLKEFQFIIIDECHVLDANAIAFVSLLKEFSFQGKLVKASATPPGRETEFTTQHKVS
LVTQDQLSFDQFVAQQGTGSNCDMIDVCDNILVYVASYNEVDQLSKMLLEKGFLVTKVDG
RTMKGGKTEIETRGTKAKKHFVVATNIIENGVTLDIEGVVDFGLKVVPELDADSRVMRYS
KHRVSFGERIQRIGRVGRHKAGKALKIGTTERNLQKIPELVATEAAFYCFAYGLPVMSEG
VSSNMLSKCTVPQAKTMMSFELPIMYTVNLVRFDGSMHPSIHELLKPYKLRDSNVVLNKM
AIPHGNVKNWISVRELKYVGVRIDIQEDIRVPFHARDIPDKLHERIFEACLKHKGDAGFG
RLSVVSACKVAYTLQTDPTSLQRTIKILDELIAREQRKREYFQSASNTACSGSSYSLTSI
INAIKARNTCDFTQENLSVLHSARQQLMEFKNINCDFSRPSTLDEFGALDCLQFESASEI
SRHLKLKNHWNGSLLAKDMLIALGVLGGGCWMLYTYYNQEVSKEFKFQGKSKRTRQKLKF
RAARDMKDRYEVHADEGTLVENFGTRYSKKGKTKGTVVGLGAKTRRFTNMYGFDPTEYSF
ARYLDPITGATLDETPIHNVNLVAEHFGDIRLDMVDKELLDKQHLYLKRPIECYFVKDAG
QKVMRIDLTPHNPLLASDVSTTIMGYPEREGELRQTGKARLVDPSELPARNEDIDAEFES
LNRISGLRDYNPISQNVCLLTNESEGHREKMFGIGYGSVIITNQHLFRRNNGELSIQSKH
GYFRCRNTTSLKMLPLEGHDILLIQLPRDFPVFPQKIRFREPRVDDKIVLVSTNFQEKSS
SSTVSESSNISRVQSANFYKHWISTVAGHCGNPMVSTKDGFIVGIHSLASLTGDVNIFTS
FPPQFENKYLQKLSEHTWCSGWKLNLGKISWGGINIVEDAPEEPFITSKMASLLSDLNCS
FQASAQTKWLLKEVKDNVQAVAQAPSALVTKHVVKGKCALFEVYLANNQEAEKFFRPMMG
FYQKSRLNKEAYTKDLMKYSKVIDVGLVDTEKFEKGLTKVECMLRQKGFTNCNYVNDEAD
IYAALNMKAAMGALYSGKKKDHFEGMPMEEFAKFIRASCERLFSGKMGVWNGSLKAELRP
QEKVLANKTRSFTAAPVDTLLAGKVCVDDFNNKFYSLHLEIPSTVGITKFYGGWDSLLNK
LPDGWVYCDADGSQFDSSLTPYLINSVLRLRLNFMEEWDIGEEMLKNLYTEIIYTPILTP
DGTIIKKFKGNNSGQPSTVVDNTLMVIMAMYYAAEKLGVEGDLSESIVFYANGDDLLIAV
HPSHEWYLDQLSTLFKELGLNYDFSSRTKNKGDLWFMSHCGIKKEGLWIPKLEPERVVSI
LEWDRAAEPEHRLEAICASMIEAWGYDDLLNHIRRFYLWVLDQAPYKQLSAEGKAPYISE
VALKSLYTGKPATSCELEVYNKIHQEQHDEFDDSQMKFVFQSDKEKLNVGEQQKSKDKES
RQRDQEGENSNRQIIPDRDINAGTTGTFSVPKLKKISGKLSLPKIKGKGLLNLDHLLVYV
PNQDDISNNIATQEQLEAWHEGVKNAYEVDDQQMEIICNGLMVWCIENGTSGDLQGEWTM
MDGEKQVTFPLKPILDFAKPTLRQIMAHFSQAAESYIEFRNSTEKYMPRYGLQRNLTDYG
LARYAFDFYRLTSKTPARAREAHMQMKAAAIRGKSNHMFGLDGNVGTDEENTERHTANDV
NRNMHHIAGARF
NT seq
9219 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatcatgattggaagcattatggttcccttaaacaaggaatctagtgtttct
gagagtaatataaatattagtagtattattcctaaaacaaaaaccagtactcatatcgag
gctggactcaaaaacatgtcttttaatttacaaccaaccactgatccattcaaagcgata
actctagcttgcaaagaaagagttgcaaagtttggtgatatggtttttaagactagaaga
ggcattaccacaatggtgccaaaaccagcgcgtttagtggaagaggaaaagagagcagct
gaagctctaaagcgatttatggaagtggagtggactctggaagagatcgatcctgatgct
gaatatcaagtaccagatttaagacagaggggctcccaagtgtccttcaagagtccttat
cataagaggactccaaaaactgcagaaaaactgaaagtgattaagccagtgcagggaagc
aagaagattcaacatgtaacaaatgcgctgctcaagattgttaagaacaacaatctaatt
cttgaagttgctgacagaaataagaaagcaaatcatgcaactttctcaaaatatggctca
acttatggcatgcacataattgttaaccatatggttcgaaagagacgctcggttgatgtg
cggcttaatggtctcatggcaagcatcgcaaagcaggaagcaattggatttgaaaagtta
aatgttagcacattaagagaggggcacagtggacttgtgttgcaaactaaaacagttcca
aactgccactttaataatgatgacataacaattgtgagaggtgtaataaagagtcatgga
gtaccttgcttagtagatgctagacagaatttgaatcatcagcaactgagtaggataaga
gaattctctgcaggagatttgttttggaaaggatacaatcagactttcatagataataga
ccaaaagacattggacacacgtgtacatcagatctcaatgtaattcaatgtggttctgtg
atggcgttgatgactctagcactattcccgtgcggaagaatcacttgcaaagaatgtgtg
gaggattttcataatcagaacaatagggagagatatgcaagaacagaaagatttttaagc
caggcaatgactctcctagcacaaacatacccagaattcaaacactcgagagacatcttg
caattgtttcgtgagcgtttaagtatggaaaactcaaatgcagaggcctgtgttgagaca
aacaaagccataacatcacttacagagactccatttaaccacataaggaagataaatgag
gtgcttttaagatatggtagcctgacaaatgatgaggtgggggttgcaagtgcgagctta
cttgaaattactaggtacattcgaaacagaactgattccatccaaaggaatgacctaagt
aagttcagaaacaagatttcctcaaagacacacatcaacctagatttaatgtgtgataac
caacttgacaaaaatgcaaacttcatgtggggtcaaagagcataccatgcaaaacgattt
ctgtcgaattatttcagtgtgattgatccatctgaaggttacgacaaattcatcaataga
aagttacccaatggtacgagagaacttgcaactggcaggttaattgttcctacaaacttt
gaatcttttagagatcaaatgaaaggaaccatggtggacaatagaccaattggcaaggaa
tgtgtttcgcgtgttaaaggagccttttgttacccgtgctgttgcacaactgatgatatt
ggcaatgcaattttgtctgaatttaaaatgccaacaaaatatcatttagttcttggtggt
caggaagcagcgaaatacatagagctaccatcagatagcagtggcatgatgtacatagca
aaagatgggtattgccatattaatatattctttgctatgttggtgaatgtgtcggaagat
aaatcaaaggatttcacgaaaatggtgcgggatcagataatgccaaagttaggtcagtgg
ccaacaatgctagatgttgcaacagcgtgttggtacttaacagtttggtttcctgacaca
ctcagtgctgaacttccaagaatacttgttgatcacaagttaagcaccatgcacgttctg
gattcgtatggttcaataagcacaggataccatgttcttaaggcaaacattgtttcccaa
ttaatcaaatttgccagtgacgatcttgagtcagatttgaagttttacagagttggtggc
aaatcattgacagggcaggtgatacagtttgacacaaaaatgttaatctcaagtatttac
cgaccaaggcagatggaaaagatcatcaatgaagaaccatttgtgctagttctagcaatg
cagtcaccatcagttcttctggccctattcaatagtgcctcgctagagaaagccgtggag
gtttggctgcacaaagacatgcgtgtctcacatgtgatgacaatgcttgccctcctggca
gcaaaagtaagtgcagctaaaatggtgaatttacagatggaaataattgaagctagtgct
ggccactttctcgctgcaatggacaccattcataagccaatgcactccatcaacacagca
aacattttcttgatgaacttggaagaggggagatcgactgacagaacaattgatgaactt
gggttccactctttgaaaaagtctagtcaagtactcatggaaaaaatctgggcagaggat
ttagagcagcaatggctaggtttaagattgtcacaaaagttttatttaataaagcagtca
tggaagcagcgggcaaagtattccaaaatactagcccagagagacgagctaggtgccagc
gacaagttcagcgcatcactcagattgtcagtaacaagcattaagaatcaagcaatcagt
tgcaagaagagaatggtcatcacaagtaagaaatgtttgttcagtgtgcagaaaatggtg
gcaatacaagccttaagagtgtttaagcgatgcatgagtaatatggtggacgttcttaat
gtgctagcaacaattacgctcctgatgggcattctgagtcaagtgagatctcacatcaaa
actgtcacatcatacaagcgcgtttcgaaggaagccaaagtccaagatgatctgtacaga
atcaatgattattatgagttgttgaaggctcgtgataggtacacagtggatgagtttcgc
agtaagctggaatcactaaacccagaactcctagaaactttcgatgagtattacaaggaa
ccaaagtggtttgtcatggaatccaaatcaaatgacatggtggctcttgaaaaagtagtg
gcttttacagcactcgttatgatgatatttgatggagagagaagtgactgtgtttacaaa
atactgaataagctcaaaggcataatttcaacaacaactcaagacggctacaaatttcag
agtcttgatgacattaagcctatgttggaagacaagaagggtgtcattgattttgagatt
gatgagggtgacagcaagataatatgcagcaaccaaacaacatttgttcaatggtgggac
aatcaacttcagaatgggaatgtcatcacacactacagaacagagggtcatttcatggag
tttaccagagatacagcacaagaggttgcgcacacaatagcccacagtgatttcaaagac
attttagtgagaggggctgttggatcaggaaaatcgactggcttaccatcataccttagt
gaaaaagggaaggtgctgatgttggagtcaacaaggccgttagcagaaaatgtgttcaag
cagctcaagagtgatcccttctacaagaacccaacacttcgcatgagaggaacaacgagc
tatggttcaacaccaattacaatcatgacaagtggttttgcactccatttttatgcaaac
aaccctcagttactgaaagagttccaattcataatcatagatgagtgtcatgttctagat
gctaatgcaattgcatttgtcagtttgctcaaggagttttcatttcaggggaaacttgtc
aaagcatcagcgacaccaccaggaagagaaactgaattcacaacacaacacaaagtgtca
ttggtaacgcaagaccaactttcctttgatcaatttgtggcccagcaaggtacaggttcc
aattgcgacatgattgatgtgtgcgacaatatactggtatatgtcgcgagttacaatgaa
gtggaccagctttcaaagatgttactggagaaagggttcctagtgacgaaagtcgatggg
agaaccatgaaaggaggaaagactgagattgaaacgagggggacaaaagcaaagaagcat
tttgttgttgcaacaaatatcatagagaatggagtaacgcttgatatagagggtgttgta
gattttgggttgaaggttgttcctgagttggacgcagatagcagggtgatgcgctattca
aagcacagagtttcatttggtgaaagaattcagagaattggaagagttggcaggcacaaa
gctggtaaagcactcaaaattggtacaacagagagaaaccttcagaagatcccagaattg
gtcgctacagaagcagcattctattgctttgcatatgggcttccagtcatgtctgaggga
gtgtcctccaacatgctgagtaaatgtacagtaccgcaagccaagaccatgatgagcttt
gaactaccaatcatgtacacagttaacttggttagatttgacggttcaatgcatccatcc
atacatgagttacttaaaccatacaagctgagggactcaaatgttgttttaaacaaaatg
gctataccacatgggaatgtcaaaaactggatttcagtcagagagctcaaatatgttggt
gttagaattgatattcaagaggacatccgagtgcccttccatgccagagatataccagac
aagttacatgagaggatattcgaggcttgcttgaagcacaaaggggatgcaggttttgga
agactcagcgtggttagtgcatgcaaggtggcttacactctacaaactgatcctacatca
ctgcaaagaacgatcaaaatcctggatgagttaatagcaagagaacaaaggaaaagagag
tacttccaaagtgcttcaaacacagcatgctctggttcgagttactccttgacgagcatc
atcaacgcaattaaggcacggaacacctgtgatttcacccaagaaaacttgagcgtgcta
catagtgctaggcagcaactgatggaattcaagaacataaattgtgatttttctagacca
tcaacacttgatgagtttggtgcactggattgtttgcagtttgaatcagcgagtgagata
agcaggcatttgaaactcaaaaaccactggaatggatcattgttggctaaagatatgctt
atagctttaggcgttctcggtggtggttgttggatgttgtatacttactacaaccaggaa
gtgtccaaagaatttaagttccaagggaaaagtaagagaacaagacaaaagttgaagttc
agagcggcaagagacatgaaggatcgttatgaagtgcatgccgatgaggggactttagtg
gaaaattttggaactcgttattcaaagaaaggcaagacaaaaggtactgttgtgggtttg
ggtgcaaaaacaagacggttcactaacatgtatggttttgaccccacggagtattcattt
gctaggtatcttgatccaatcacgggtgcaacattggatgaaaccccaattcacaatgta
aatttggttgctgagcattttggcgacataaggcttgatatggttgacaaggagttactt
gacaaacagcacttatacctcaagagaccaatagaatgttactttgtaaaggatgctggt
cagaaggtgatgaggattgatctaacaccccacaacccattgttggcaagcgatgttagc
acaaccataatgggttatcctgagagagaaggtgaactccgtcaaactggaaaggcaagg
ttagtcgacccatcagagttgcccgcgcggaatgaggatattgatgcagagtttgagagt
ctaaatcgcataagtggtttgcgcgactataatcccatttcacaaaatgtttgcttgcta
acaaatgagtcagaaggccatagagagaagatgtttggaattggatatggttcagtgatc
attacaaatcaacatctgttcagaaggaataatggggagttatcaattcaatccaagcat
ggctacttcagatgccgcaacaccacaagcttgaagatgctgcctttggagggacatgac
attttgttgattcagttaccaagggactttccagtgtttccacaaaagattcgctttagg
gagccaagagtggatgacaaaattgttttggtcagcacaaatttccaggaaaagagttcc
tcgagcacggtctcagagtccagtaacatttcaagagtgcagtcagccaatttctacaag
cattggatctcaacagtagcaggacactgtggaaaccctatggtttcgactaaagatgga
tttattgtaggtatccacagtcttgcttcattgacaggcgacgttaacatcttcacaagc
tttccgccgcagtttgagaacaaatatctacagaagctcagtgaacacacatggtgtagt
ggatggaaactaaatcttggaaagattagttggggtggaatcaacattgtggaggatgca
cctgaagagccctttataacatccaagatggcaagccttcttagtgatttgaattgttca
ttccaagcaagtgcgcaaaccaagtggttgttgaaggaagtgaaggataatgtgcaggca
gtagctcaggccccaagtgctttagttacaaaacatgtagtgaaaggaaagtgcgcattg
tttgaagtgtacttagccaacaaccaggaggcagaaaaattctttagacctatgatgggc
ttctatcagaagagtagattgaacaaagaagcttatacaaaggatctcatgaaatactcg
aaggtgattgatgttggcttggttgacactgagaagttcgaaaagggtttaactaaagtt
gagtgcatgctaagacaaaaagggttcacaaattgcaattacgtgaacgacgaagcagac
atctatgcagcactaaatatgaaagcagccatgggagctttgtactcagggaaaaagaaa
gatcatttcgaaggcatgccaatggaagaatttgccaaattcattagagcaagttgtgag
cgtctgttcagtgggaaaatgggagtttggaatggctcgttaaaggctgaacttagacca
caagaaaaggttttggcaaacaagacaaggtccttcacagcagcaccagtggacacatta
ctggctggaaaggtttgtgtggatgatttcaataacaagttctacagtctccatcttgag
ataccctccacagttggtatcaccaaattttatggtggttgggattcattgttgaataag
ctaccagatggatgggtgtattgtgatgctgatggctcgcagtttgatagttctctaaca
ccatacctgataaattctgttctgagacttcgactgaacttcatggaagagtgggacatt
ggtgaggaaatgcttaagaacttgtacacggagatcatatatacaccaatcctaacacct
gatggtacaataatcaagaagttcaaagggaacaacagtggacaaccatcgacagttgtc
gacaacacactaatggtgataatggctatgtactatgcagcagaaaaacttggtgtggaa
ggagatttaagcgagtccattgtgttctacgccaatggtgatgatttgttgatagcagtg
cacccaagtcatgagtggtatctagaccaactttctacacttttcaaagagttgggcttg
aactatgatttctcaagcaggacaaagaataaaggtgatctctggttcatgtcacactgt
ggtataaagaaagaaggtttgtggattcccaagttggagccagaaagagtagtctcaatc
cttgaatgggatagagcggcagagcctgaacataggttggaagctatttgtgcatccatg
atcgaagcttggggttatgatgacttgctcaatcacatacgcaggttttatttatgggtt
cttgaccaagcaccatacaaacagctcagcgcagaaggaaaagcaccctatatctcagaa
gttgcgttgaagagtttgtacactgggaaaccagctacaagttgtgaactagaagtgtac
aataagatccatcaagagcagcacgatgagtttgatgacagccagatgaaatttgttttc
caatccgacaaagagaagttgaatgttggtgagcaacaaaagtcaaaggataaggagtca
agacaaagagatcaagagggtgaaaactcaaacagacaaatcattccagacagagacatc
aatgcaggaaccactgggactttttcagtacccaaattgaagaaaatatcaggaaagctt
tcactgcccaaaatcaaaggaaaaggactgctgaacttggaccacttgttagtttatgtt
ccaaaccaagatgacatctctaacaacatagcaactcaagagcagctggaagcgtggcat
gaaggagtcaagaatgcgtatgaggtggatgatcagcaaatggaaatcatatgcaatgga
ttgatggtgtggtgcatagagaatggcacgtcaggtgatcttcaaggtgagtggacaatg
atggatggagagaagcaagtaacattcccacttaagccaattcttgactttgccaaacca
acattgaggcaaattatggcccacttttcccaggcagctgaatcatacatagagttcaga
aactcaacagagaaatatatgcctaggtatgggctgcagagaaatctcacagattatgga
ctggccaggtatgcatttgacttctacaggttgacctcaaagacaccagcaagagctcga
gaagcacatatgcaaatgaaagcagcagcaataagaggaaagtcaaaccacatgtttgga
ctggatggcaatgttggaacagacgaggagaacacagaaaggcacacagcaaatgatgtt
aacaggaacatgcatcacattgctggagcacgattttag
DBGET
integrated database retrieval system
