Viruses: 940229
Help
Entry
940229 CDS
T40000
Symbol
polymerase, PAMVgp1
Name
(RefSeq) Potato aucuba mosaic virus; putative RNA-dependent RNA polymerase
KO
K26615
Alphaflexiviridae RNA-directed RNA polymerase
Virus
12182
Potato aucuba mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
RdRP_2
AAA_14
ATPase_2
KAP_NTPase
AAA_16
AAA_19
NB-ARC
Motif
Other DBs
NCBI-GeneID:
940229
NCBI-ProteinID:
NP_619745
RS:
NC_003632
UniProt:
Q86820
LinkDB
All DBs
Position
NC_003632:83..5023
Genome browser
AA seq
1646 aa
AA seq
DB search
MSRLKNVLEQIRDPSVITAINESAYEAIRPVLKEALVNCPYALTKEEGDELEGMGISINP
YASQVHTHAAAKAIENRMLEVVGHHLPKEPVTLMSLKRSKLRFLRRGPQMNDHFVNPIVE
AKDLTRYENADRAESYYYCSTSVAYLSDSLHFLSLEELAHIFTSSNKLETLLATVVLPVE
ACQKRPSLYPTVYTINYSDDGFCYLPGNHAGGAYYHNYSTLQWLKVDSIECVDKLAYAEP
FTLTFQLIESLGANHLFIISKKNLITPKIRSFKKDSHVLLPQIFHPKQRNANKPIKKTQA
MQLYLYCKSVKEATMRDIFAKIRQIVPTQELDLYDPDELTHIANYFYVVSHLSCVNDHQS
LLKAGFFQKLFIPIKNYLRELSETVNGKTEFSQVLAALSWTTLLTTWSLRRCLKYANCRS
VAIARHLGTTAFHQHKRNRQRLHGVELVGPEDETALVVRENQTVELNSDNQSVSSMASTE
LAEVRSVASTLTFPTSTSATSLVLDDQLWAELLLRKAGQKRVVNVNNLGVPFERDRKKHA
AQWVPTGMENLMNEVANCLQNPINLGFCQELPANYSSSWHTYQNLLITSDLVCVISDAPA
MLELKTRKKKKQTVMPIFPGQCNLISGLQIRDCRFRFVSNAACRIVELMFVESDVPRKNR
SWEVTTTESDSDAQSDQPKQEPIDEVDFLNGILGNNVNSGPTLSEPNATEDTVNQSDTQR
KMVAASQIAVEVTPNPSFRRHTVIAENAQDVKSPASLAVTDSTTLPWAAWLDVLKQHGFR
GLDLQKDPYDKIIYPVDKVQILPHAEWDTVPDLNLRVALQQLKRFPIKIKVNHQRAAAYG
SDIKNKRTGKLLLDQPKQWRESFAYKMINRDLERVVVVIHGAGGCGKSRFLQEWLNNHED
MNSVCTIVCPTIELRNDWSKKIPKLEPTNIKTFEKAMLQNAKKIVIFDDYSKLPAGFIEA
YMIHHNSVDLFILTGDTKQSEHHERNREAYISTLEPATEVYSQHCEYYLNCTHRNVKALA
NKLGVYSEVEGDLIVHVKKVPLKGKRLPMLVPSNDKSDALVDLGNVSMTYAGCQGLTCQM
IQVLIDNHTQFCSEQVLYTCLSRAVNEIAFINTGPNSEDFWSKLDSTPYLKAFIDNYRDE
KTERFLSTPAPAEPQEPELPKTHLPVAPNHLLENHISNLREKHDREIFNKNFGYSNAIQG
AGVTELFQHQQAKDESLLWATIEARLAISSPENNWKEFVLKKDIGDILFFNYHALMELPD
ESPPFEPRLWAVCKAEVTNTYMAKPMANLINAAQRQSPDFHPEKIALFLKSQWVKKVEKL
GCIKVKPGQTIAAFMQETVMVYGTMARYLRKKRQEFQPRRVFINCEKTPEDFGAFIKDNW
NFDRKAHTNDFTAFDQSQDGAMLQFEVAKCRFFNIPEDVIEGYIHIKLNAHIFLGTLSIM
RLSGEGPTFDANTECSIAYTATRFHIPKDSTHVYAGDDMAVDCDLVEKKSFAKLAKELKL
TSKTIKPNQRKGDWAEFCSWMITPKGIVKNPVKLNASLELAAALKKSNEVARSYALECKF
AFDLRDDVYSIFTEQEMEHHWSCVRQLLFLKQSEVLNTHKDMLTLKPSFDDPPGEARLLK
EGRPRKGRRESLRFSHPTHSRRLSYL
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggttaaagaacgtcttagaacaaataagagacccctcggtcataactgccatc
aatgagtcagcctatgaggcaatcagaccagtccttaaggaagcactcgtcaattgtccg
tacgcactcaccaaagaagaaggggatgaactagaaggaatgggaattagcataaatccg
tacgcctcacaagtacatacacacgcggcggctaaagccattgagaacagaatgctcgaa
gtcgtagggcatcatctacctaaagaacctgttactttaatgagccttaaaagaagtaaa
ctgaggtttctgagacgtggcccacaaatgaatgaccactttgtcaacccaatagtggaa
gctaaagatcttactcgctacgagaatgctgatcgtgcagagtcgtattattactgctct
acaagtgttgcctatctgtctgacagtctacacttcctatcactggaagaattggcacac
atcttcacatcctcaaacaagcttgaaacacttttagctaccgttgttttgcctgtcgaa
gcttgtcaaaagagaccgtctctatatcctaccgtttacactataaactactcagacgac
gggttttgctacctccctggaaatcatgcaggcggagcttattaccataactactccacc
ctacaatggcttaaagttgattccatcgagtgcgttgataaacttgcctacgctgaacct
ttcactctaacttttcaacttattgaatcgctaggcgcaaaccacttgtttatcatttcc
aagaagaatctgatcactccaaagattagatcctttaagaaagatagtcatgtgcttttg
cctcagattttccaccctaaacagaggaacgctaataagccaattaagaagactcaagcc
atgcaactgtacctatactgcaaatccgttaaggaagccactatgcgggacatctttgct
aagattcgacaaatagtgcctacccaagagctggatttgtatgatcctgatgaactaact
cacattgcgaactacttctatgtagtatcccatctgagttgtgtcaatgatcatcaatca
ctacttaaagctgggttcttccaaaaattattcattcccatcaaaaattatttgagagaa
ctttctgaaacagttaatgggaagactgagttctctcaagtccttgctgctttgtcatgg
accaccttacttacgacgtggagcctgagaaggtgtctgaaatatgctaactgtagaagt
gtagctattgctagacatttgggtaccactgctttccaccagcacaaaaggaatagacag
aggctacacggcgtggaacttgtaggaccagaggatgaaactgctctcgtcgtaagggag
aaccaaactgtagagctaaattctgacaatcaatctgtgagcagcatggccagcacagaa
ttagcagaagttagaagcgtagcatcaacactgactttccccacctctacttcggcaacc
agcttagttttagacgaccaattatgggcagaactgctgttacggaaagctggccaaaag
agggtcgttaatgttaacaaccttggtgttccattcgaaagggataggaaaaaacatgct
gcacaatgggtccctactggtatggaaaacttgatgaatgaagtcgcaaattgcttacaa
aacccaattaatctaggcttttgtcaggaactccctgcgaattattcaagcagctggcac
acctaccagaatctgctgattacatcagatttggtctgtgtcatctctgatgcaccagca
atgctcgagctcaaaactcggaagaagaaaaaacaaactgtgatgcctatatttccgggt
caatgcaatttaattagtggtttacaaattagagattgtagatttcgttttgttagtaat
gctgcttgtaggatagttgaactaatgtttgtggaaagcgatgttccaagaaagaatcgc
agttgggaagttacaacgacagagagtgattctgatgctcaaagtgatcagcccaaacaa
gagcctattgatgaagtagacttcttgaatggcattctaggaaataatgtgaactctggt
cccaccctttctgaaccaaatgctacagaggatacggtcaaccagtctgacacacaaaga
aagatggtggctgcatcgcaaattgccgttgaagtaacaccaaacccgagttttagaaga
cacactgtcatagccgaaaacgcacaggatgtgaagagtccagcctccttagccgttact
gactctaccacacttccatgggcagcatggcttgatgtgcttaaacagcacggttttcgt
ggtttggatttgcagaaggatccctatgacaaaatcatctaccccgttgataaagtgcaa
atcttaccccatgcggagtgggacacagtgccagacttgaacctcagagtggcattacaa
caacttaaaaggttcccaatcaagattaaagtcaaccaccagagggcagccgcttatgga
tcagacatcaagaataagcgcactggcaaattgctactggaccaaccaaaacaatggcgt
gagtcttttgcttacaagatgatcaatcgtgatttggaaagagttgtggttgtgatccat
ggtgctggtggttgtggcaagtccagatttcttcaggagtggctcaacaaccatgaggat
atgaatagtgtctgcacaattgtatgccccacaattgagttaaggaacgactggtcaaaa
aaaattcccaagttagaacctaccaacatcaaaacattcgagaaggcaatgctccaaaat
gctaaaaaaattgtcatatttgatgattacagcaagctcccggcaggattcattgaggct
tacatgatccaccacaactctgtagatttgttcatactcactggtgatacaaagcaatct
gaacaccatgaaaggaatcgtgaggcttatatttctacactggagccagccacagaggtc
tactctcaacattgtgaatattacttgaactgtacacataggaatgtcaaagctttggca
aataaacttggagtatattcagaagtggaaggggatttgatcgtgcatgtaaagaaagtt
ccactgaaaggcaagaggctgcctatgttggtcccatctaacgacaagagtgacgctttg
gtagatcttgggaatgtgtctatgacatatgctgggtgtcaagggcttacttgccaaatg
atccaagttctgatagataaccacactcaattttgctctgaacaggttctctacacctgc
ctttcccgtgctgtaaatgaaattgcttttatcaatactggcccaaattctgaggacttt
tggagcaaattggactccactccatacttaaaggctttcatagacaactaccgggatgag
aaaacagagcgtttcctgtccactcctgcccctgctgagcctcaagagcctgaactacca
aagacacacttgccggtggcacctaatcaccttttagagaatcacatctctaacttgagg
gagaagcatgaccgggaaatcttcaacaagaacttcgggtatagtaacgccatccaggga
gcaggcgtcacagaactatttcagcaccaacaggcaaaagatgagtctttgctatgggca
accattgaagctagactggccatctcaagtcctgaaaacaactggaaagagttcgttctc
aagaaagacatcggtgatattctattcttcaattaccatgccctaatggaattgccagat
gaatcaccaccattcgaaccaaggctgtgggctgtgtgtaaagctgaagttaccaatact
tacatggctaaacctatggctaatctcatcaatgcagctcaaagacagagcccagatttc
caccctgagaaaattgcactcttcctgaaatcgcagtgggtgaagaaagtggagaagttg
ggttgcatcaaagtcaagccaggacaaaccattgccgctttcatgcaggaaacagtaatg
gtttacggcactatggccaggtacttaaggaagaagaggcaggagtttcaaccaaggaga
gtgtttatcaactgtgagaaaactcctgaggactttggggcgttcattaaagacaattgg
aactttgacaggaaagcccacacaaacgacttcacagcttttgatcaatcacaagatggc
gccatgctacaatttgaagttgctaaatgtcggtttttcaacattccagaagatgtcatt
gaaggttacatccatatcaagctgaacgcccacattttcctcggcaccttgagcataatg
cgactatctggagagggtcccacctttgatgctaacactgagtgttctattgcttacact
gccacccggttccatataccgaaagacagcactcatgtttatgctggggatgatatggcg
gtggattgtgatttagtagaaaagaaatcttttgccaagttagctaaagagttaaagctc
acttccaagaccatcaagccaaatcagaggaaaggggactgggccgaattttgcagttgg
atgattacgcccaaaggtatcgtcaaaaatcctgttaagctcaatgcttcattagaattg
gcagcagcactgaagaaaagcaatgaggtggcccgatcctacgctctagaatgtaagttt
gcctttgatttgcgggatgatgtatattcaatctttactgaacaagaaatggagcatcat
tggagttgtgttcggcaactgcttttcctgaaacaatctgaagtgctcaacactcacaaa
gatatgcttactttaaaaccttcatttgatgatcccccaggcgaagcaaggctgttaaaa
gaagggaggccaaggaaaggaaggcgagagtcgttgagattctcccacccaactcattct
aggaggttaagttacctttaa
DBGET
integrated database retrieval system
