Viruses: 940257 Help Entry 940257            CDS       T40000                                  Symbol POLY, APOIVgp1 Name (RefSeq) Apoi virus; polyprotein   KO K24570   Flavivirus structral polyprotein Virus 64280  Apoi virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Flavi_NS5 Flavi_NS1 Flavi_glycoprot Flavi_DEAD Flavi_NS5_thumb Peptidase_S7 FtsJ Flavi_NS4B Flav_NS3-hel_C Flavi_glycop_C Flavi_propep Flavi_NS4A Flavi_E_stem DEAD Flavi_M Peptidase_S29 Helicase_C AAA_19 AAA_30 Trypsin_2 Cas3-like_C_2 Motif Other DBs NCBI-GeneID:  940257 NCBI-ProteinID:  NP_620045 RS:  NC_003676 UniProt:  Q9J9C2 LinkDB All DBs Position NC_003676:1..10116 Genome browser AA seq 3371 aa AA seqDB search MAGNLKKKSAKPKAQRRPPQGRGGQVKQKPGAAIVGVMHYVTHQALGMKLSGRLKKFWRN TPPGRLLKAAMVILNILKNLVMGLLAKKKGGRRGGKSVPFFLMLVPIALSAVVMNDGGWI FLKPTVADIGKTITVRNGTCVFSSLDIGNECEETMTYPCITLAATEEPVDLDCFCRDVKN VMVTYPTCKRNTRTRRDVTIQDHPPSVTLTKPSLLKHVGGAEEHLQKVENWILMNSWKVV LVTVALLYGFGNKLQTWILIIVTLIVAPAYASTCVSVAKRDMIRGDLGTTWVDAFLEKGS CSTLMVEDKPAVDVWLDEVSQSSVIASHEYCMEVAGSNVKSSGSCPTQGEAHLAEEANSD YVCKRGFSDRGWGNGCGLFGKGSIVACIKTTCKNDANIIKSYVYDAPKIQFTVGIEVHKG NLLGPSDNNRIVKATFSAEAGKHSVELTGYGVLEFSCRVVASTDLSDIRLIEIDNHFYNV HEDWLRDLPLPWRLPKGKWKDMERMVVFKDPHAVKWTVQTYGNQRTAIFKALVKANEISK SNNKYILDGGHLSCRIGVNGLKMVGATYSQCTKPFEWIKKPVLTQHGTVVMEVKYTGEGA PCRIPFRVERVDKPMENVGNLVTGNPYASQKDAVVFLEAEVPPGISIIKIGDIDVQWNQP GMTVGKTIELVKRGLERTLISSSAFWNSDEPFHFSNLISIIKIPFDFVFGSLSFITRLIL SVVLIWICLNTRNGTMAAATGVVGFTLLALTTGVVGEIGCMIDVGRRELTCGDGVVVWNQ LDDWWEKYQYYPDEPAVFLGSLMEDKEKHCGYMPANPLEWRMWRKLQGQINKALEDADLE WRIEVSEEHHYFQRAPHEWQRKKGDVELSWKNWLKDNRLYDWLAPMNKTGRTKYFIGDVG MEECPLDQRSWNAFRMAEFGEGVFQTYVYLDVARNRSILCDRGLLAPVAKDDNAIHSSNW MWMESNITEGKAQLQSITLQAVVECEWPKTHTLGFSTSTEQDLILPLRYGGPLTEFNTIP GYGQQSKGPWSHGVVRVERGECPGTKVEVDSDCAGRGASVRSTREGGSLIEDWCCRTCTL PPLHFRTEEHCWYAMEIRPLKTVGGLVMAFDEEPVWKPWGIMGLIVLLYMGFFPSLGNGK FSMGFGMAVFLLCVTGMLSLTELAKYTMLLMAVYAERFDEPCLWAMTVSTVFDLRPGAIL LLVFTWPWHFQRVVAAASVTNVLSLMITEGVWAILDGVGLVLYCYLLTRSGKKSMWGLLF VSASRLITEGSLQVAWILVGALTMLCSSRHFLEGDWVQKAGYLCAGYHQVVSSPWRVIPM LWNEMASRKRSGQRSVDPIAIVVTLMALGAAVAKDGTAVQPLTLGLFSAVILFLLLQLTG GPLIAEWAGYADWKSNALRYSGHLDLEVKKLSDGRLVNTAKENTTTTDGLILGAGMLASG FSWVAVPVTFAILALRQWNRSIQKSNTSFSLITDILESDDHESPNEGIYRIFASGVLGKK QVGVGIWKQGVFHTMWHVTRGSVLSINGRRFQPEWASVRDDLISYNGPWRLPAKWEGGEV QLHGYTPDGKVQVTQLLPGRMVTDGGEELGLIPIDHPPGTSGSPIITKDGHVVGLYGNGV VHGETYCSSIAQANVPAETEPEVLKTNWTSKGKLTVIDAHPGSGKTKKILPRLVDEAVGR KLRTLVLAPTRVVVKEMEQALRGKPVSFHSSAASKKVPGALVDVMCHATYVQRRMMPIPQ KNYELVIMDEAHWTDPSSIAARGFLDSQRKENHLSLVLMTATPPGTDDPWPQSNAPINDN EKIIPEGDWKTGHDWITEFEGKTVWFVPSLKAGATIAKTLRGFGKSTAVLSSKTFSEVYP TLRDSKPDFILTTDISEMGANFDVDRVIDSRTTLKPIEVGNCVDISGERAVTPASAAQRR GRVGREEGRQAEYVYQGEVDPDDGDLVCWKEAQILLDNMEGRFKTASVFYEPEITKMPDT PGYFKLPVEKKKYFRHLISNCDFTPWLAWKVASETKGVEDRGWVSLGPKEHEIADHEGEL IKFKSPSGRENILRPVWLDNRMIREKRDLEALIDYAKGKRSGMTILQLLYEGLQHDLDVV YTYMRANKESRAWKMANEDLPEALVGLGQSVLSIVGVIFLVWLLLRQSKVDRVTLGALLL TAGSAVLWMGGAAPCVVGGSLICGFVLLVALSPEEGMQRTQVDSTLAMFVLTLYTLIAAV VANEMGFLERTKKDFREFFRKEVNMDGEPTQWRIFDLDICPMVSWSLYVLLVTGLRPVCL HGLQMMTQRVVTGAISGRSDLLGQLREGMGNVSIGLPELALGMSVVRGMTPVTLVLGGLA GVAHWCWFYPIHEAALTMKANKIVAQSMAKNTQVDGEVIYQLEEKIAKTEDHEKKFSYGV AVILNLINLALNQNLWSLLECAMAILAALCYIRGQPTLCTLPVVAGLGKILRGDYLGILP VALHAWRSTSENRRGVSSSYITYGEQWKRELNKLNAQAFFLYKSRLVHEIDRAEAVSNLS KGRTNTGHAVSRGTSKLAWMHERGYVPLKGVVVDLGSGRGGWSYYAAAQERVRKVNAYTL ATTKGHEQPRLVQSYGWNLVTFKKADVRTIEPYPVDTLLCDIGESSSSSSIEAKRTLQIM DVVGKWLEISPGASFCIKILCPYNPEVIEHLSRWQHQFGGGLVRVPHSRNSTHEMYFVSG GGGNLMSSITAVTTQLMRRFTLEAGPRHVFDINLGVGTRSNLMEKSEADKSLIADRITII QNENKASWHQDPNQPYRTWTYHGSYSIRDVGTSASAPNHVVKLLAWPWLKIEKVVLMAMT DTTAFGQQRVFKEKVDTKAPEPPKEVKKVMRLVFRWLLNHIKSKGAVVRRCTKEEFINKV NSNASIGAYLREMGEWSSAKEAVSDPKFWNMVDKERQLHLKGKCHNCVYNLMGKREKKPG EFGVAKGSRTIWYMWLGSRFLEFEALGFLNEERWASRDISGGGVEGIGINYLGYHLEKMA RKVGVLYADDTAGWDTRVTQADLEDERELLHFMEGEHKRLAEAIFKLTYENKVALCPRPG SKGGTVMDVISRKDQRGSGQVVTYALNTLTNIKVQLVRMAESEGILTPELEDLGIEQWLK QNGEDRLSRLLVSGDDCVVNALDERFGKALTWLNTMEKTRKDIEAWKPSRAYRTWQEVEF CSHHFHELFLRDGRKLIVPCRDQHELVGRSMVSQGGSSGVAGTACLAKAYAQMWLMSYFH RRDLRTLGFAIMSSVPKDWFPTGRTTWSVHANHEWLSNENILEIWNRVWIEENPFMEDKT TVAEWKNIPYLQRNQDLSCSSLIDNPTRAQWAKLLKGAVMKVREMIGREHYSDYLSNMGR YQEGTEEFHMW NT seq 10116 nt NT seq  +upstreamnt  +downstreamnt atggcggggaatttgaagaagaaatctgccaaacccaaggcccaaaggagaccacctcag ggccgaggagggcaggtcaaacaaaaacccggtgctgctattgtgggagtcatgcattac gtgacccaccaggcgctgggcatgaagttaagtgggagacttaagaagttctggaggaat acaccgccaggtcgcctcttgaaagcagcgatggtcatacttaacatcctgaagaacttg gtgatggggcttttggcaaaaaagaagggagggaggagaggtggaaagtctgttccattc ttcttgatgcttgtccccattgctctgtcagcagttgtgatgaacgacggcggttggatc tttcttaaacctacagtggctgacatagggaaaacaatcacagtaagaaatggtacatgt gtgttctcctctctagacattgggaatgaatgtgaagaaaccatgacttatccctgtata acactggccgcaacagaagaaccagttgatctggactgcttctgcagagatgtcaaaaat gtgatggtgacttatcccacgtgtaagaggaacaccaggaccagacgggatgtcacaatc caagaccatccaccgtctgtcacactcaccaaaccatctcttctcaagcatgtgggaggg gctgaggagcatcttcaaaaggttgaaaattggatcttaatgaacagctggaaagttgta ttggtgaccgtggccttgctctatggatttgggaacaagctacaaacgtggattctcata attgtgaccttgattgtggctccagcttatgctagcacctgtgttagtgtggccaaaagg gatatgatccgtggtgacctcggaacaacctgggttgatgcattccttgagaaaggatcg tgcagtacactcatggttgaggacaaacctgctgtagatgtctggcttgatgaagtgtcc cagtcctctgtcattgctagccatgaatattgcatggaagtcgccggaagcaatgtgaag agctcaggctcttgtcctacacagggagaggcgcatctggcagaagaggcaaactctgac tacgtgtgtaagcgaggtttcagtgacagaggttggggcaatggatgcggcttatttggg aaagggagcatagtggcatgcatcaagactacatgcaagaatgatgctaacatcataaag agctatgtctatgatgctccaaaaatccagttcactgttggcattgaggtgcacaaaggc aatttacttggaccttctgacaacaacaggattgtaaaagccactttttcagctgaagct gggaaacactctgtcgagctcactgggtatggtgtcctggaattcagttgtagggtggta gcaagcacggatctatcagacatacggctgattgagatagacaaccacttttacaatgtt catgaggactggctgagagatctgccccttccctggaggttacccaaagggaaatggaaa gacatggaacgtatggttgtctttaaggatccccatgctgtgaaatggactgtccagact tatggcaaccaaagaactgctatcttcaaagctttggtgaaagccaatgaaatctccaag tccaacaataagtacattctggatggaggacacttgagttgcaggatcggagtcaatgga ctgaagatggttggggctacctattctcaatgcacaaaacctttcgaatggatcaagaaa ccagtcctaactcaacatggcacagtggtcatggaagtgaagtacacaggtgaaggagcc ccatgccgtataccattcagagttgaacgagtggacaagcctatggaaaatgttggcaat ctggtcacaggaaacccatatgcctcacaaaaggacgctgtggtgttccttgaggcagaa gtccctcccggcatcagtatcatcaaaattggtgacattgatgtgcaatggaatcagccg ggaatgactgtggggaagaccatagaacttgtcaagagaggcttagagagaacactgatt tcaagcagtgccttttggaactcagatgaaccattccacttttcaaatcttatctccatt atcaagattccttttgattttgtgtttggtagcctgagttttattacacggctgatcctg tcagtggtactgatatggatatgcttgaacacaaggaatggtaccatggcagctgcaaca ggtgtggttggattcaccctactagcattgacaactggggttgttggagagataggatgt atgattgatgtgggaaggagagagctgacttgtggggatggagttgtggtctggaaccaa ctggatgattggtgggaaaagtaccaatattatccagatgaacctgctgttttcttgggt tccctcatggaagacaaagagaagcattgcggctacatgccagctaatcctctagaatgg aggatgtggaggaaattgcaagggcaaataaacaaagccctggaggacgccgacctagag tggaggattgaggtttctgaagaacatcattatttccagagagctccccatgaatggcag aggaagaaaggtgatgttgaacttagttggaagaactggttaaaggacaatagactttat gactggttagctccaatgaacaagacagggaggactaagtacttcatcggtgatgttgga atggaagaatgtccactggaccagcgttcatggaatgcttttaggatggctgaatttggc gagggcgtcttccagacttacgtttacctggatgttgcaaggaacagatccatcctgtgt gaccggggtttgttggctcccgtggccaaggacgataacgccatccatagctcaaattgg atgtggatggagagtaacatcactgaggggaaagcccaattgcaatccatcactctgcaa gctgtagttgagtgtgaatggcctaagacacacaccctgggattctcaacttccactgaa caagaccttatcctaccattgaggtatggaggacctctgactgaattcaacaccatccct ggctatggacaacagtccaagggaccctggagccatggagttgtgcgagtggaacgtgga gaatgtcctggcacaaaagttgaggttgattctgattgtgcgggccgaggagcatcagtt cgatcaacgagagaaggaggaagcctgattgaggattggtgttgccgcacctgtaccctt ccacccctgcatttcaggactgaagagcactgctggtatgccatggaaattcggccatta aagacagtgggaggacttgtcatggcttttgatgaagaaccagtgtggaagccatggggt attatgggattgatagtcctgttgtacatgggcttctttccttctctgggcaatggaaaa ttttcaatgggttttggcatggctgtgttcctgttgtgcgtgactggaatgctctcatta acagagctagcaaagtacaccatgttgctcatggctgtgtatgctgagagatttgatgaa ccctgtctatgggctatgactgtctccacagttttcgatctgagaccaggtgctatacta ctccttgtgtttacatggccttggcactttcagagagtggttgctgcagcttctgtgaca aacgtcctctcgctgatgattaccgagggagtgtgggccattttggatggagtggggctg gtactgtactgctacctcctaaccaggtcaggaaagaaatccatgtggggactgcttttt gtttcagcaagcagactcatcacagagggtagcttacaagtggcttggattctcgttggc gcattgaccatgttatgctcatcaagacactttttggaaggagattgggtccagaaagca ggatacctgtgcgcgggataccaccaagttgtgtccagtccatggagagtgataccaatg ctgtggaatgagatggcctcacggaaacggagtggccaacgctcggtagacccaatagcc attgtcgtgacgttgatggctttgggggctgctgtggccaaggatggcactgccgttcag cctctaacactgggactcttttctgcagtcatcttgttcctattgcttcagctgacgggt gggcccctcatagctgaatgggcagggtacgcggattggaaatccaatgccttgcgctac tctggtcatctggacttagaagtcaagaagttgagcgatgggagactggtcaacacagct aaggaaaataccaccaccactgatggactcatactaggggctggaatgctagcttctggc tttagctgggtagctgtgcctgtgacttttgccatcttagccctcagacagtggaacaga agcatccagaagagcaacacttcattctcattgatcactgatattcttgaaagcgatgat catgaatcgccaaatgaaggaatttacaggatcttcgcaagtggagtgttgggaaagaag caagtgggcgttggcatctggaaacagggtgtctttcacacaatgtggcacgtgactaga ggatcagttttgtcaatcaatgggagaaggtttcagccggagtgggctagtgtgagagat gatctaatttcttacaatggaccatggcggctgccagcaaaatgggaaggtggtgaggtg cagttgcacggatacacaccagacggaaaagtgcaggtgacccaactacttcccgggagg atggtgacagatggtggtgaagagctgggacttattccaattgatcatccgccaggaacc tcgggctctccaatcattactaaagacgggcacgttgtcggtctctacggcaacggagta gtccatggtgagacttactgtagctcaatagctcaggccaatgtgccagcagaaaccgaa cctgaagtgctgaaaaccaactggacatcaaagggaaaactcaccgtcattgacgctcat ccagggagtgggaaaacaaagaaaatattgccacgccttgttgatgaagctgttggaaga aagcttcgcacactagtccttgctccaacaagggttgttgtgaaggagatggagcaggca ctcagaggcaagcctgttagttttcattcttcagcagcgagtaagaaggtgccaggagca ctggtggatgttatgtgtcatgcaacttatgtccagcgacggatgatgcctattcctcag aagaactatgagcttgtcatcatggatgaagcacattggacagacccctctagcattgcg gcccgaggattccttgattctcagcggaaggaaaatcacctttcactggtgctcatgact gccacaccacctggaactgatgatccctggcctcaaagcaacgctccaataaacgacaac gagaaaatcattcctgagggtgattggaagactggacatgattggataacagagtttgaa gggaaaacagtctggtttgtcccatcactaaaagctggagccaccattgccaaaacgctg agaggatttggaaagagcacagctgttctgagcagcaaaaccttttctgaagtgtaccca accctcagagatagcaagcctgactttattttgactacagacatctcagagatgggggct aactttgatgtggaccgtgtgatcgactcaaggacaactctcaagccaattgaagtcggc aattgtgttgacatctctggtgaaagagcggtaactcccgcctcagctgctcaaaggaga ggaagagtggggcgtgaggagggacgtcaagctgagtacgtctatcagggcgaagttgac cccgatgacggagacttggtgtgctggaaagaggcccagatactcctggataacatggaa ggacgattcaaaacggccagtgtcttctatgagcctgagatcaccaaaatgcctgacaca cctggctattttaagctaccagttgagaagaagaagtattttcgtcacttaatatcgaat tgtgacttcaccccttggctagcttggaaagttgcttcagaaacaaaaggtgtggaagac agaggttgggtatctctagggccgaaagagcatgaaatcgctgaccatgaaggagagttg attaagttcaaaagccctagtggaagagaaaacatcctacgacctgtgtggcttgacaat agaatgatcagagagaaaagagacctggaagccctcattgattatgctaagggcaaacgt tcaggaatgaccattcttcagcttctctatgaagggctacagcatgatctggacgtggtg tacacctacatgagagccaacaaagaatcaagagcgtggaaaatggcaaacgaagatctt ccagaagctctggttggcttgggacagagtgttctctccattgtgggggtgattttcctg gtctggttgctcttaaggcagagcaaagttgacagggtcaccctgggggctctgttgcta actgctggctcagcggttctttggatgggtggagcagccccttgtgtcgtgggtgggagc ctgatatgtgggtttgttttactagtagcattgtcaccagaggagggaatgcaacgcact caagttgactcaactctggctatgtttgtgttgacactctacaccttgatagccgctgtt gtcgctaatgaaatggggttcttggaacgaacaaagaaggacttccgagagttttttagg aaagaagtgaacatggacggtgagccaacccagtggagaatttttgacctcgacatctgc ccaatggtaagttggagcttgtatgttctgttggtgacgggtttaaggcccgtatgcctg catggattgcaaatgatgacacagcgtgtagtcactggggccattagtggaagaagtgat ttgctcggccagttgagagaaggtatggggaatgtctctattggactccctgaacttgct cttgggatgagcgttgtgcgtgggatgacaccagtcaccctagtgttgggtggtctggca ggagtggcacactggtgctggttttacccaattcatgaggctgcactcaccatgaaagcg aacaaaatcgtggcacagtctatggcaaaaaacacgcaagtggatggcgaggtgatttac cagcttgaagaaaagattgctaagaccgaagaccatgaaaagaagttctcatatggagtg gctgtcattcttaacttaatcaacctggccttgaatcaaaatctgtggagcttgcttgag tgtgcaatggctatcctagctgctctctgctacattagaggtcaaccaacactctgcaca ctgccagttgtagccggattgggcaagatactgcgaggtgactacttgggtatcttgccc gtcgcattgcacgcttggcggagcacgagcgagaacagacgaggagtgagttcaagttac atcacttatggagagcagtggaagagagagctgaacaaattgaatgcccaggcattcttc ctctacaagagtagactcgtccacgaaattgacagagccgaagcagtttctaacctcagt aaaggacggaccaacacaggacacgcagtgtcgagggggacaagcaagcttgcttggatg catgagcgcggttacgttccactcaagggagttgtggtcgacttgggaagtgggcgagga ggctggagctattatgctgcagcccaagagagagttcggaaagtcaatgcttacactttg gctaccaccaagggacatgaacaacctcgtctcgtgcagtcctatggctggaacctggtg actttcaagaaggctgacgtgaggactatagaaccttaccctgtggacacgcttttgtgt gacatcggagagtccagttcatcctcatcgattgaagccaagcggacgctgcaaataatg gatgttgttgggaagtggctggaaatttctccaggagcttccttttgcataaagatcttg tgtccttataatccggaagtcattgagcacttgagcaggtggcaacaccagtttggagga ggattggtccgtgtcccgcactcgaggaactccactcatgaaatgtattttgttagtgga ggaggaggaaatttgatgtcatcgatcacagcggttacaacccaacttatgcgcagattc acccttgaggctgggcctaggcatgtgtttgacatcaatcttggagtgggaacccggtcc aatctcatggagaaatcggaagcagacaagagcctgattgcagacagaatcaccatcatc cagaatgagaacaaggcttcttggcatcaggatcccaaccagccttacagaacttggact tatcatggcagttacagcataagggatgttggcacctcagctagtgccccaaatcatgtt gtcaagcttctggcatggccttggttgaaaatagagaaagtcgtgttaatggccatgacg gatacaactgcctttggacagcagagagtgtttaaagagaaagttgacaccaaagcaccc gaacctcccaaagaggtcaagaaagttatgcgcctggtgtttaggtggcttcttaatcac ataaaatccaagggagcagtggttagaagatgcaccaaggaagaattcattaacaaagtg aattcaaacgcttccataggcgcctacctcagggaaatgggagaatggagtagtgccaaa gaagccgtaagtgacccaaaattttggaacatggttgataaagagcggcaattgcatctc aagggcaaatgccacaactgtgtctataacctgatgggcaaacgagagaaaaaacccggt gagtttggagtcgccaagggatcacgcaccatctggtacatgtggttggggagcagattc ctggagtttgaggcccttggatttctaaatgaggaaagatgggcctctagagacatctcc ggaggaggcgtggaagggatcggaattaactatctagggtatcatcttgagaaaatggct cggaaagtgggagtgctctatgcagacgataccgccggatgggacacccgagtaactcaa gcagatcttgaggatgagagagagctcctgcattttatggagggagaacataaaaggcta gcagaggcaatttttaaacttacctatgagaataaagttgcattgtgcccacggccaggt tcaaagggaggcactgtgatggatgtgatatcaaggaaggaccagcgaggttcaggccaa gtcgtgacttatgcactaaacaccctaacaaatatcaaggtgcaattagtgcgcatggct gaatctgaaggaatcttgacccccgaactagaagatcttggaatagaacaatggttgaaa caaaatggagaggatcgactctcaaggctccttgtcagtggagatgactgcgttgtcaac gctttggatgagaggtttggcaaagctctgacatggcttaacaccatggaaaaaacccgt aaagacatagaagcatggaaaccatcacgggcttatagaacctggcaggaagtcgagttt tgctcacaccacttccatgagctttttctccgagacggaaggaagctgatcgtcccgtgc cgggaccagcatgaattggttggacggtcaatggtctcgcagggtgggagctctggagtg gcagggacagcttgtctggccaaagcatacgcccagatgtggctgatgagctatttccat aggagagacctcagaactcttggattcgctatcatgagctcagtgcccaaggactggttt cccactggtagaacgacttggtctgtgcatgccaatcatgagtggctcagcaacgagaac attcttgagatttggaacagggtttggatcgaggaaaatcccttcatggaagacaagacc acagtagccgagtggaaaaacataccatacctccaaaggaaccaggatttgtcatgctcc agcctgatagacaacccaaccagagcgcagtgggcaaaactactcaaaggggctgtcatg aaagtgagagagatgataggccgagagcattactctgactacttgagcaatatgggtagg taccaagaagggacggaagagttccacatgtggtaa

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