Viruses: 940259 Help Entry 940259            CDS       T40000                                  Symbol POLY, RBVgp1 Name (RefSeq) Rio Bravo virus; polyprotein   KO K24570   Flavivirus structral polyprotein Virus 64285  Rio Bravo virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Flavi_NS5 Flavi_NS1 Flavi_glycoprot Flavi_DEAD Flavi_NS5_thumb Peptidase_S7 Flav_NS3-hel_C FtsJ Flavi_NS4B Flavi_glycop_C Flavi_propep Flavi_NS4A DEAD ResIII AAA_19 Flavi_E_stem Helicase_C Flavi_NS2B Peptidase_S29 AAA_30 SLFN-g3_helicase Trypsin_2 Flavi_M Cas3-like_C_2 Flavi_capsid Motif Other DBs NCBI-GeneID:  940259 NCBI-ProteinID:  NP_620044 RS:  NC_003675 UniProt:  Q9JAD5 LinkDB All DBs Position NC_003675:1..10140 Genome browser AA seq 3379 aa AA seqDB search MVGKLKNAKNKGRTRLRRPPKGKAMGMGLILGIMNYASHIALGMKVNSRLTSFWKMTPPG KLAKGITTLMNILRTLLNGILGRKKQRRGGTESLFPIMFLTGLMAMQVSQNGDGWLLSPD QMDIGKTYKVGTGLCIFSSLDIGVPCNLTITYACVTLANTEEPVDLDCFCRDVQNVWVKY PLCKPGGHRLKRSLSITEHPSSVSLDKPTLWHHWNSVNDRIGKSEEWIVTNAWKSLVIAI VVIMVFGISYQSMIVICIAALIAPSYSTQCVNIQKRDIIRGASDVSWFDVLLEKGACVTI SAQDKPSVDLWLDDVIQESLIEGRHYCTKASITDLKADARCPTQGEATMREEHLDGYVCK RSFSDRGWGNGCGLFGKGSIVGCAKATCGANDIIKSYSYDSPKVKYVIGAEVHQGKLLTN NSTDRIVKTTLTAESEKHTITIADYGSMDFTCRVVASAELSNIRMIELDGHMFNVHEDWL SDLPLPSKISGGSWHGMDRLVVFKEPHAVKMEIQECGDQRPAVFKSLVKAEEVTKTSNSY HLTGGHVDCRVSTLNLRMKGLTYQMCSSSFVWHKRPVATQHGTVAMEVKYKGSDAPCRIP VSVEKEGYNGKNFGNLITANPFAANNEAVVFLELEAPLGVSTIKVGGAVFQWKQEGSSIG KAVTLMKRNIEKTLITSSAYWSSSEPFTSAGIMRILRMPFDMIFGGVGFLGKLMISGVLI WLCVNVQNSTLSVVSGVIGFMLLGFTTGVMGDHGCALDTYRKEMRCGDGLMVWNDVNNWH EAYKYYPEDPEIFLASLVEDREKHCGYSPSNHIDLAMWKALEEEINWFLEDQSVDWRIMV GNEEKVFHKTNSSGWERRAGRNSLSWKNWAKSFKLMSWILERKQGNGTYFVGPVGLDECP LANRSWNAFKVSEFGAGILQTRAFIDIQTSNSQFCDQGLIGSGAKDKRIVHGSPWMWMDS YEVNGTLQLQKLEMKYAVECLWPLSHTLGGKGAPESQLILPKKLGGPVSTLNMIKGYATQ ELGPWKNGALVLERGECPGTKVQILEDCDKRGHSVRSTTQGGVTIPDWCCKHCVLPPLKF TNADGCWYAMEIRPLKTTPGLVYAGSMTALEAQSWGVLSVMLLFYMGFLPKIAKERWSVP TAFMFFVFAITGLIDCRDFLRYLLAVGTTFAWQFPEPMLWMVAMQTVFMLRPALTVGILF ARSWKFERILALASLLQVFQHVTMEWESVWKVLDSLGFVVYGFLLSKSGMQSHVFMLFVV SLTWMDSIVMQHALALGGVMLLMSISPKFMQSDWIQKTQLTILGGLKILNAPFYVVALIF YTCFNDYMHRGQRATDYTAILGIVMAIGAAICKNGLESSGWMIGIMGIFLVFFLLQLSKG EMTAEWAGYCEWKKDCDKSVGSLSLEVKRMSDGRLVNLSKDKESMTEVIMVSVGMIVTGF HWIGIPLTIAMLGIKKCYDATQRSIIVFGVGEDPEGEKVSIQDGVYRIMVSSLFGKKQVG VGIWTGNSFHTMWHVTRGAVLNICGRKIVPEWASITEDLISYNGGWRLFTRWDGTEVQVH AYTPDGKVTTTQLLPGSMKVEGGLELGLIPLDFPPGSSGSPIISSDGKIIGLYGNGVLHG DTYCSSIAQTEKKEEDVPQPKTLEGDGWLSKGKITVIDAHPGSGKTHRILPNLVKRAAER KMRTLVLAPTRVVIKEMESALKGMDISFHSSAVSTKTPGSLVDVMCHATFVNRKLIHTPQ RNYEVIIMDEAHWTDPSSIAARGYITSQCEMKKCAVVLMTATPPGVDDPWANSNEKIADV EKMIPDEPWKQGYEWITDFEGRTAWFVPSYNAAQGISKALRERGKKVLILTSKTFHDNYP KIQSEKPDFILTTDISEMGANLDVDRVIDPRTTLKPMEKGNIVEVSGEISITPASAAQRR GRVGRVKGKKAEYIYQGTTEMDDSDLICWKEAQMLLDNMDSRQRATCQFYEPEQDKMTEI PGYYRLTEEKRKVFRHLLTQCDFTPWLAWNVAQNTKGIEDRGWLNIGPNQHLVSDENGDP IKYTTPSGRERQLQPVWLDNRMVKEKRDLVSLLEYAQMRRSGVLLGLPRLMYQKVVESID MVHTYYTADPNSRNFKLAEKELPDAFLCILQSLLMIVGVFIILMWILSRTKVDRIWIGTL VIGMSGLTAWYGGVPLPVISGGALVCFVLLICLVPEEGMQRTQIDSTLATILICVILTVV TVVANEMRLLENTKRDIMDLFKRDTTVNESPVFHYTWESLMEWDIRPLTIWATYVVFVTL ARPQALHNLKMFTQRVITGTVAGKHDMVNLLPFGAAWLSLGLGDLTLAVGAFRNMSCLTL VGGVLLALAHWTWFYPLHAAAESSKAHKIVTQSLSKNTMVDGETIYQLDQTSAETERSEK IFSMVTGFTLTAINVFTLRKAWAVLECVMVGMVLIKYLIEPKGTTFWTLPVVSGLTSLVR GDFFGLIPISFRVWLYARSDRRGIVTSHHTLGEKWKLELNQLSHKEFLSYRKVGILEVDR PDAVMNLNKGKTNTGHAVSRGTSKLAWMHERGFIPLSGHVVDLGCGRGGWSYYCAAQTPV RKVNAYTLGTGAHEKPRLVESLGWNLITFKSKTDVFKLKPYSCDTVLCDIGESNPSYATE AKKTLEVIEMVGNWMLVNPESNFCFKVLNPYSPQVLERLTKFQHMFGGGIIRVPHSRNST HEMYFVSGITNNLVGSVNAVTKKLMQRMRQEGKERVVADIKFPVGTRSNLTTCVKADAKL IEQRIEKVKNENKNSWTFDDNHPYRTWQYHGSYQIRDVGTKANAINYVVKLLSWPWQALE SVFSISMTDTTAFGQQRVFKEKVDTKAPEPPKEVKIVMRKVFTWLVKRILKKGGKIRKCT KEEFINKVESHASIGAWSQEMQGWSDAKEAVHDPRFWNMVDKERKLHLEGKCEMCIYNMM GKREKKPGEFGCAKGSRTIWYMWLGSRFLEFESFGFLNEEHWASRELSGGGVESIPLFYL GYHLREMAKKPGKLYADDTAGWDTRITEADLDDECILCDYMEDEHKQLALSLFELCYKNK VALCPRPGRHGGTVMDVISRRDQRGSGQVVTYALNTLTNIKVQLIRLAESEGVLDEDFND HGIETWLNHYGEERLSRLLISGDDCVVNACDERFGRSLTWLNTMEKIRKDIDLWAPSNGY ENFEKVEFCSNHFHELMLKDGRQLVVPCRSQNELVGRASVNQGGSATVAGTACLAKAYAQ MWNLLYFHRRDLRLLGFAIMSATPSNWIPTGRTTWSIHATKDWMTTEDLLDVWNRIWIDE NPWMDDKTNITTWKNVAYLPRGQDMCCGSLIGSSKRATWAKLIPGAVEKVRGMIGNENYV NYLGAMGRYECDDVSFQLY NT seq 10140 nt NT seq  +upstreamnt  +downstreamnt atggtaggtaaattgaaaaacgcaaaaaataaagggagaacccggctacgccggcctccc aaagggaaagccatgggcatgggactgattctcggaatcatgaactacgcctcccacatc gctcttggcatgaaagtcaacagcaggctaacgagtttctggaaaatgactccacctggg aaattagctaaggggataaccactctgatgaacatcctccggactctgctaaacggaatc ttgggacgcaaaaaacaaaggagaggaggaactgaaagcctgttccccataatgtttcta actggattgatggctatgcaggtatcccaaaatggtgatggttggctgctttcacctgat caaatggatataggaaaaacctacaaagttggtactggactatgcattttctcttcactg gatattggcgtgccatgcaacttgaccataacatatgcgtgtgtcaccttggctaatact gaagagccagtggatttggactgcttttgccgtgacgttcagaatgtgtgggttaaatat ccgctttgtaaacctggaggccacaggctaaaacgatcgctgtcaataactgaacatcca tcgtctgtctcactagacaaaccaactttgtggcatcactggaacagtgtcaatgatcga attggcaagagtgaagagtggatagttaccaatgcttggaaaagtttggtcattgctatt gttgtcatcatggtgtttggaatcagttaccagagcatgatagtgatatgcatcgcggct ctgatagctccaagctactcaactcagtgtgtcaacatccaaaaacgtgatatcataagg ggagcgtctgacgtttcttggtttgatgtcctgttggaaaagggggcttgtgttaccatt agtgctcaggataaaccaagtgtggatctgtggctcgatgatgtgattcaagaatctctc atcgaaggaagacactattgcaccaaggcatccatcacagaccttaaagctgacgctcgc tgtcctacgcaaggtgaagccaccatgcgtgaggaacatctcgacggatatgtctgcaag agaagcttcagtgatagaggctggggaaatggttgtggtttgtttggaaaaggcagcatc gttggatgtgctaaggccacttgtggggcaaatgacatcatcaaaagctactcgtatgat tcaccaaaagtcaaatatgtaattggagctgaagtgcatcaaggcaagttgctaacaaac aacagcaccgacaggatagttaagacaactctcacagctgaatctgaaaagcataccatc acaatagcggattatggtagcatggacttcacatgtcgtgttgttgctagtgctgaattg tcaaacatcagaatgattgaacttgatggccatatgttcaatgtgcatgaggactggctg agtgacttgccattgccctccaaaatttcaggtggatcttggcatggaatggatcgttta gttgtatttaaagaaccacatgcagtaaagatggaaattcaggaatgtggagatcagaga ccagcagtttttaaatcattggtcaaagctgaagaagtgaccaaaactagtaactcttac catctcaccggaggacatgttgattgtagagtgagtactctcaatcttcgaatgaagggt ttgacgtatcaaatgtgttcttctagctttgtgtggcacaaaagaccagtggccacgcaa catggcacggttgcaatggaagtcaaatataagggatccgatgctccatgtagaatacct gtttctgttgaaaaggaaggttataatgggaagaattttggaaatcttattactgctaac ccatttgccgctaataatgaggctgttgtgttccttgaattggaagctccgctaggtgta tcgaccatcaaagttggtggagctgtgtttcaatggaaacaagagggaagttcaatcgga aaagctgtaactctgatgaaaaggaacattgaaaagacattgataacctcaagtgcttac tggagcagttcagaacctttcacttcagcaggcataatgcgcattctccgaatgccgttt gacatgatatttggaggtgtaggatttctgggaaagctcatgatatctggagttctgatc tggttgtgtgtaaatgtccaaaactcaaccttatctgtggtttcaggagtgattggattt atgcttcttggatttacaactggagtcatgggagaccacggatgcgcactagacacatac aggaaagaaatgcggtgcggggatggattgatggtttggaatgatgtcaacaattggcat gaggcctacaaatattaccctgaagatcctgagattttccttgcaagcttggttgaggat agagagaaacattgtggatattctccatcaaaccacattgacttggccatgtggaaagca cttgaggaggagataaactggtttctggaagatcagtcagttgattggaggataatggtt ggaaatgaagaaaaggttttccacaaaacaaactcaagtggctgggaaagaagagctggg aggaattctctatcatggaagaactgggcgaaaagtttcaaattgatgtcatggattttg gagaggaaacaaggcaacggaacgtatttcgtgggtcctgtaggccttgatgaatgtccc cttgctaaccgatcatggaacgctttcaaagtgtctgagttcggggctggcattttacaa acaagggctttcattgacattcaaacatcaaacagtcagttttgtgaccagggactgata gggtctggcgctaaggataaaagaattgtgcatggatctccctggatgtggatggacagc tatgaagtcaatggcactctccagctacagaaattagagatgaaatatgccgttgaatgc ttatggccattaagccacacacttggaggaaaaggagctcctgagtcacaactcattctc cctaagaaacttggaggaccagtatcaacactgaacatgattaaagggtatgctacccaa gaattaggaccctggaaaaatggggctcttgttcttgaaagaggagagtgtcctggaaca aaagtccaaattctagaggattgtgataaaagaggacattctgttagaagtaccacccaa ggaggggtaacaatacctgactggtgttgtaaacactgtgttttgccacctttgaaattc accaatgccgatggatgttggtatgccatggaaatcagaccactgaaaacgacacctgga ctagtttatgcaggaagtatgacagctttggaagctcagtcatggggagttctctctgtg atgttgctgttttacatgggctttctaccgaagattgcaaaagaaagatggagtgtgcca actgccttcatgtttttcgtctttgccatcacagggttgattgattgcagggattttctc cgctacttgctggcggtgggaacaacctttgcgtggcaatttcctgagccaatgctttgg atggttgccatgcagactgtgttcatgctacgtcctgccctgacagttggaattttattt gccagaagctggaagtttgaaagaatcttggctcttgcttctctcctgcaagtctttcaa catgtgactatggagtgggaatcagtttggaaagttttggattccttgggctttgttgtc tatgggttcttactttctaagtctggaatgcaaagccacgtgttcatgctgtttgtagtg tcactgacttggatggatagcatagtaatgcaacatgctctagcacttggaggagtgatg ctcttgatgtccattagtccaaagttcatgcaatctgattggatacagaagacacagtta accattctgggaggattgaagatcctgaatgctcctttctatgttgtagcattgattttt tacacatgtttcaatgattacatgcatagaggccaaagagctactgattacacagccata ctcggcattgttatggcaataggagcagccatttgcaaaaatggtctggaatcaagtgga tggatgatcggaatcatgggaattttcctagtcttttttctcctccaattaagcaaagga gagatgacagctgaatgggctggatactgtgaatggaaaaaagattgtgataaatctgtt ggcagtctgagtcttgaggtgaaaaggatgtccgacggaagactggtcaacctctcaaaa gacaaggagagtatgactgaagttatcatggtgtctgttggaatgattgtcactggtttt cattggattggaattcctctaaccatagctatgcttggaatcaaaaagtgttatgatgcc acgcaaagatcaattattgtgtttggagttggtgaagatccagaaggtgagaaagtcagt attcaagatggggtttaccgaattatggtttcatcactcttcggaaagaaacaagttgga gttggaatttggaccggtaactcattccataccatgtggcacgtcacacgtggtgctgta ttgaacatctgtgggaggaaaatcgtaccagaatgggccagcatcacagaagatctaata tcatataatggtgggtggagattgttcactagatgggatggaacagaagttcaagttcac gcttacacccctgatggaaaagtcaccacaacacagctgcttcctggaagcatgaaggtt gaaggtggtcttgagttgggcctaattccacttgattttccaccaggatcttctggctca ccaatcatatcatcagatggaaagataattgggctgtatggaaatggagtcttacatggg gacacatactgtagttctatagctcaaactgagaagaaggaagaagatgttccacaacca aagacacttgaaggagatggctggttgtcaaaagggaaaataaccgtaattgatgcccat cctggaagtggtaaaacacatagaatactaccaaatttagttaaaagggctgctgagaga aagatgaggacacttgttttagctccaacacgggttgtgataaaagagatggaaagtgct ctcaaaggaatggatatcagttttcactcatcggccgtgtcaacgaagaccccaggatca cttgttgatgtcatgtgccatgctacttttgtaaataggaaattaattcatactccacag aggaattatgaggtaataatcatggatgaagctcattggacagacccgagtagcattgca gctcgtggatacatcactagccagtgtgaaatgaaaaaatgtgctgttgtgttgatgacg gctacacctcctggagttgatgatccatgggcaaacagtaatgagaagattgctgatgtt gaaaagatgattcctgatgagccatggaaacaaggttatgaatggataacagactttgaa ggaagaacagcgtggtttgtgccatcatacaatgcagctcagggaatctcaaaagccttg agagagagaggaaagaaagtcctcattctgacaagcaagacctttcatgacaactatcct aagatacagtcagaaaaacctgatttcatactcaccactgacatttcggagatgggtgcc aatttagatgttgatagggtaattgatccaaggacaactcttaaaccaatggaaaaaggc aatattgtggaggttagcggtgaaatatcaataacgcctgcctcagcagcccagagaagg ggaagagtcggacgagttaagggaaaaaaggccgaatacatctatcaaggaaccacggaa atggatgattcagatctaatttgctggaaagaagcacaaatgttactggacaacatggat agccgacaaagagcgacatgtcaattctatgaacctgaacaagacaagatgactgaaatt cctggctattatagactcacagaggagaagagaaaggtattccgtcatctcctaacgcag tgtgattttaccccatggctggcatggaatgtagctcagaataccaaaggcattgaggat cgtggatggttaaacataggtcccaatcagcatttagtgtcagatgaaaatggtgatcca atcaagtatacaacacctagtgggagagaaaggcaacttcaaccggtttggttggacaac aggatggtgaaagaaaaaagagacttggtttcattgctagaatacgcccaaatgagaaga tcaggggttctgctaggcttacccagactgatgtaccaaaaagttgtggaatcaattgac atggtgcacacttattacacagctgacccaaattcacggaactttaaacttgctgagaaa gaactacctgatgcttttctctgtattttgcagtcattgcttatgattgtgggagtgttc atcattctaatgtggatactaagtagaaccaaagttgacaggatctggattggaacgttg gtgataggaatgtcaggattgacggcatggtacggaggagtgcctttgcctgttatctca ggtggagcgctggtctgctttgtgctgttaatctgtttggtaccagaggaaggaatgcaa cgcactcaaattgactccacattggcaaccattttaatctgtgtgatactgactgttgtg acagttgttgccaatgaaatgcggctactggaaaatacaaagcgtgacataatggatctc ttcaagagagacaccactgtgaacgaaagtcctgtcttccattacacgtgggaatcactc atggaatgggacatcaggcctttgaccatctgggccacatatgtggtttttgtcacgtta gctaggccacaagccttgcacaaccttaaaatgttcacacaaagagtcattactggaaca gtggctggaaaacatgacatggttaacttgcttccatttggagctgcttggctctctttg ggtttaggagacttgactttggcagtcggggcgttcagaaacatgtcatgtctaaccttg gtgggtggagtcttacttgccttggctcattggacttggttctatccgctgcatgcagca gctgaaagctcaaaagcccacaaaattgtaacacaatctctctcaaagaacaccatggtc gatggtgaaaccatttatcaattagaccaaacctctgcagagacagagaggagtgagaag attttctctatggtcactggcttcactttgactgctatcaatgttttcactcttcgcaaa gcatgggctgtcttggagtgtgtgatggttggaatggtgttaatcaagtatctgattgaa ccaaagggaactacattttggacccttccagtggttagtggattaacatcactggtccga ggagatttctttggtttgattcccatttctttcagggtctggctatatgccagaagtgat agacgaggtatagtaaccagtcatcacacattgggtgaaaagtggaaacttgaacttaac cagctaagtcataaagaattcctgagttacaggaaggttggaattttggaagttgacaga cccgatgctgtgatgaatttaaataaaggcaaaaccaacactggacacgccgtttctaga ggaacttcaaaactggcttggatgcatgaaagaggttttattcccttgtcaggtcatgtg gttgacctgggctgcggccgcggcggctggagctactattgcgcagcacaaacaccagta aggaaagtcaatgcttataccttaggtactggagctcatgagaaacctcgtctggtcgaa agcttaggttggaacctcatcacctttaagtcaaaaactgatgtattcaaactaaaacca tacagttgtgacactgttttatgtgatataggtgagtctaatccatcatatgctactgag gccaaaaagacacttgaagtgattgagatggtcggaaattggatgctagtaaaccctgag tcaaatttttgctttaaagtactgaacccttactcccctcaagttttagagaggttgaca aagttccagcacatgtttggaggtggaataatcagggtcccgcattcacgaaactcaaca catgaaatgtattttgtgtcaggaatcaccaataatttggttggaagtgtgaatgcagtc acaaagaaattaatgcagagaatgagacaagaaggaaaggaaagagtggtggctgacatc aagtttccagtcggcactcgttccaatcttacaacctgtgttaaggctgatgccaagctg attgaacagagaattgaaaaagttaagaatgaaaacaaaaattcctggacgtttgatgat aatcatccatatcgcacatggcaataccatggaagctaccaaattcgggatgttggtaca aaagccaatgcaattaactatgtggttaaacttttgagttggccttggcaagcattggaa agtgtgttttccatatcaatgactgataccacagctttcggacagcagagagtgttcaaa gaaaaagttgacacaaaagctcctgaacctccaaaagaggtcaaaatagtgatgaggaaa gtgttcacctggttagtgaaaagaatattgaaaaaaggaggtaagattaggaaatgcact aaagaagaattcattaacaaggtggaatcacatgcgtccattggagcatggagccaagag atgcagggatggagtgatgccaaggaagcagttcatgaccccaggttttggaatatggtg gacaaagagaggaaactacacctggaaggaaaatgtgaaatgtgcatctataacatgatg ggtaaaagagaaaagaaaccaggtgagtttggatgtgccaagggtagccggaccatatgg tacatgtggttaggtagcaggttcctagaatttgaatctttcggcttcttgaatgaggaa cattgggcatcaagagagttgtctggaggaggggtagagagcataccactgttctacctt ggatatcatctaagagagatggctaagaaacctggaaaactctatgctgatgacactgca ggatgggacactcgtataactgaagcagatctggatgatgaatgcatcctctgtgactat atggaggatgagcataaacaacttgctctttctctgtttgagctatgttacaaaaataag gtagccctttgtcccaggccaggaagacatggaggaactgtaatggatgtgatctctagg agagatcagagaggatctggtcaagttgtaacatatgcactaaacaccttaacaaatatt aaagtccagttaatcagattggctgaaagtgaaggtgtgctggatgaagatttcaatgat cacgggattgaaacttggctgaaccactatggtgaggaaagattgtctcgtctcttgatt agtggtgatgactgcgtggtaaacgcatgtgatgaaaggtttgggagaagcttgacatgg ttgaacaccatggagaaaatccgcaaggacattgacttgtgggctccatcaaatggatat gagaactttgaaaaagttgagttctgctcaaaccactttcatgagctgatgttgaaagat ggacgtcagctggtcgtcccctgcaggagtcaaaatgaattagttggtagagcttctgta aatcagggtggaagtgcaaccgttgcagggactgcgtgtctagccaaagcctatgcccaa atgtggaatttgttgtattttcacagaagagacttgaggcttctggggtttgccatcatg tctgcaacaccatcaaattggattccaactggaagaacaacatggtcaattcatgctaca aaagactggatgaccactgaagatttgttagatgtttggaacagaatctggattgatgaa aatccatggatggatgataagacaaacatcacaacatggaagaatgtggcctacctgccc agaggacaagacatgtgttgtggcagtcttattggcagctcaaaaagagcaacttgggcc aaactcattcctggagcagttgaaaaagtgagagggatgattgggaatgaaaattacgtc aactaccttggagcaatgggacgctatgaatgtgatgatgtctcattccaactgtattaa

DBGET integrated database retrieval system