Viruses: 944368 Help Entry 944368            CDS       T40000                                  Symbol ShVXgp1 Name (RefSeq) Shallot virus X; replicase   KO K26615   Alphaflexiviridae RNA-directed RNA polymerase Virus 31770  Shallot virus X Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  Vmethyltransf Viral_helicase1 RdRP_2 2OG-FeII_Oxy_2 2OG-FeII_Oxy PSV_trans_reg_dom Motif Other DBs NCBI-GeneID:  944368 NCBI-ProteinID:  NP_620648 RS:  NC_003795 UniProt:  Q04575 LinkDB All DBs Position NC_003795:99..5255 Genome browser AA seq 1718 aa AA seqDB search MTAVQKLFDQISDPNTKAGYSNACFEAAQRRPKKAMAIAPFSVTTPEALTLERFGITTSP FATTSHTHAADKIIENDCLTIIGHYLPKREAVTLIQLKRSKIHLLGRQPSQDNFQNYCHE PKDVLRYGITHPNSCPVVNTEYAVLADTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEA QHRLPSLFPDVYRLEYYKDHFAYMPGGHGGGAYVHSYGTLKWLDTAQVGPVDYTKSSITN PWPITDYLSIEKIETKAAHHIMFIQRTRAQVDWPLPPIWVYHASEYVKLPLIFYPPEANV QKTYPHTLIKRMQLYCFSVKAVSLRDIFAKLRQVIETQELVRYSMADLIRLANYFLFITG MNQVSDYESPLLENLFGKMCASIRMRLRTFFQNLLGKTSYAALLTVTDVIPVHFTTQPKR REAVGELWFQEPKWSVSTMTQPRKEHHRLQMTWTLLAWFHQLESSGSMSEPCNNSESTPQ RTATSQQKAAKLTTSQKHNRRTDQTTMNPQYPPLMLTIAPMMPRHSLMKKTIATPCRTLE EISDLDLDDFDDLPNEASNEPPSANEQSPDNHAETTTRGVFPCECGTEITVNSFGRAIEV AGVNLTDHMKGRLAAFYSRDGQGYSYTGYSHKSQGWLEGLDKLIEACGEKPTTYNQCLVQ KYEQGSRIGFHSDEQAIYPKGNKILTVNAAGSGTFGIKCAKGETTLNLEDGDYFQMPSGF QETHKHNVVAVTPRLSFTFRSTVVNSQKKPAEPEKLNQNNACPKPSDPSNASGKQHKKTH PAKGNEKSSSPNLEPLDAPTVEILKLHGFTALTPQHDGTCQIRPVYFNKDIHLRRKAVKT DMSPPARPFFDLATSLHRGIYTHKIDNRRATAYMSDVKNNLTGLVLPKLDRDLLSSWVAL AETTTREVAVLAIHGAGGAGKSRALQELLRSSPELADSINIVVPTINLANDWKAKLPQMD PRRVMTFQKACERECKSVTIFDDYGKLPAGFVDAYLAIKVNVELAILTGDQRQSTHHQER ESQISSLQSNIAQFSKYADYYLNATHRQPRRLANPIKVHAERQLGGAVLKANIVPDLAMV LVPAFRSQSLLTDLGRHAMTYAGCQGLTLNHLTIILDKDTPLCSDEVLYTAFSRASESIT FVNTHSDNPAFLAKLDATPYLKTLISWVREDEEAGADCPATEPLVKDVPTKTHIPVANDK VQLEGKIEAMEDKDTRELWSGEEKTNLMQTQDPVVQLFPHQQAKDEALFKITIGERIRMA TPEQNAKQLRHTLNAGDLLFEAYAQFMKVPKETQPFDKRLWTHCRQLALRTYLSKPTSNL QQGARQDPDFPDNAIALFNKSQWVKKLEKVGARFKAGQTISAFKQEVVLLTTTMALYLRK KREQHQPDNVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKAR HLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPTFDANTECNIAYDALRFRLGDDVR ASYAGDDLVRDKACEERAGWVYSESLFSLKAKPLVTNKPDFCGWRLTRHGIVKSPIQLYQ SLQLALRLGKIDEVKRSYAIDYLFAYRLGDKIYDIFDEDELEKHQLVTRTLIKKGMQPPE SGNHLPIFHITSDRLIRDPDAVKVQSYECDRILLKQPHIIDDYIPAGTQPRNTEHPASAD RRDMTRACNLSAEKLAFGGNTINHLFRTSWEGRSPLSN NT seq 5157 nt NT seq  +upstreamnt  +downstreamnt atgactgctgtgcaaaaactttttgaccaaattagcgacccgaacacgaaagctggctac tccaatgcttgctttgaagcggcgcaacggcgtccaaagaaagctatggctatagcccct ttctccgtcaccaccccagaagctctcacgcttgagcgcttcggcatcaccacctcccct ttcgccaccacttcacacacacatgctgccgacaaaataattgagaatgactgcctcaca attattggccactatctacccaaacgagaggcagtgactcttatccaactcaaacgcagc aaaattcatcttctgggcaggcaacccagtcaagacaatttccaaaattattgccacgag ccaaaggacgtacttaggtacgggatcacccacccaaactcttgcccagtcgttaacaca gaatacgctgttctggcggataccttacactttatgtcccctagacagctgtaccactta ttcagcagaaatccaaagctagagcgcctctttgccacgctagtactaccaattgaagct cagcacaggctaccgagcttatttcctgatgtgtacagactggaatattataaagaccat tttgcttatatgcccggaggtcacggtggcggtgcttacgtacattcttacggcactctc aaatggctagacacggctcaagtgggccccgtagattacactaaatcttcaatcaccaac ccatggcccataaccgactatcttagcatagagaagattgaaaccaaagcagcgcaccat ataatgttcatacagcgcacacgggctcaggttgattggccactgccgcccatatgggtc taccacgcctcagaatacgtcaaattacccctcatattctaccccccagaggccaatgta cagaagacgtacccccacaccctcatcaagagaatgcaactgtattgcttctcagtcaaa gccgtatcactaagagacatctttgctaagcttcggcaagtcattgagacacaagaactt gttcgctactccatggcagacctcatcaggctagccaactacttcctgttcatcacgggt atgaatcaagtcagcgactacgaatctccactgctcgagaatttattcgggaaaatgtgt gcttcaatccgcatgagactcagaactttcttccaaaacctgcttggcaaaacatcttac gctgccctgctcacggtgacggatgtcattccggtccacttcactacccagcccaaacgc agagaggctgtcggcgagctatggtttcaggagcccaaatggagcgtaagcacgatgacc caaccccgcaaagaacatcaccgtctccagatgacctggaccttgctagcgtggtttcac caacttgagagttcgggctccatgtcagaaccctgtaataattccgagtccacgccacag cgcacagcaaccagccaacagaaagcggccaagttaacgacctcacagaaacacaacagg cggacggaccaaacgacgatgaacccacaataccctccgctgatgttgacgattgcgccg atgatgcctcgacattctctgatgaagaagacgattgcgactccatgccggacgctcgaa gagatttcagatcttgacttagatgattttgatgacctgcctaacgaagcttcaaacgaa ccgccgagcgctaatgagcaatccccggacaatcatgctgaaacaaccacgagaggagtg tttccttgcgagtgcggcaccgaaatcacagttaactcctttggtcgagcgatagaagtt gcaggcgtaaatctgaccgaccacatgaaaggcaggctcgctgccttctactcacgggat ggccaaggctactcttacactggctactcgcacaaatcgcaaggctggttagagggtctt gacaagctgatcgaagcatgcggtgaaaaacctaccacctacaaccagtgcctggtacag aaatacgagcaaggctcaagaataggtttccatagtgacgagcaagctatatacccaaaa ggcaataaaatcctcaccgtgaacgcagccggctccggaacatttggcattaagtgtgca aaaggagaaaccaccctgaatctcgaggatggtgactatttccaaatgccaagcggtttc caggaaactcacaagcataacgtcgtggcagttacacctcgcttatccttcactttcaga tcgaccgtcgtgaatagccaaaagaaacccgcagaacctgagaagctgaatcaaaacaat gcgtgtccaaaaccctcagatccatcaaacgcatcgggcaagcagcacaagaaaacccac cctgccaagggcaacgagaagtcttcttcaccaaacctcgaacccctggacgcacctacc gttgagattctcaagctccacggcttcactgccctcactccccaacatgacggcacatgc caaattcgccctgtttatttcaacaaagacattcacttgaggcgaaaagcagttaagact gacatgtccccaccagccaggccattctttgacttagctacatctctccaccgaggcatt tatacgcacaaaatcgacaaccgtagagctacggcgtacatgtctgacgtcaagaataac ctcactggcttagtcctccctaaattggaccgtgacttgctgagttcttgggtagcgctt gctgagactaccacacgcgaagttgccgtcctagccattcatggagcaggaggagctggt aagagtcgagctctacaggaactgctgagatcttccccagaactagccgacagcatcaat atcgtggtaccaactataaacctcgctaacgactggaaagccaagttaccacaaatggac cctcgtagagtcatgaccttccaaaaagcttgtgagagagagtgcaaatcagtgacgatt tttgacgattacggcaaacttcctgcaggatttgtggacgcgtaccttgctatcaaggtg aacgtcgagctggcgatactgactggagatcaacgccaatccacccatcatcaagagcgt gaatctcaaatatcgtcacttcaaagtaacatcgcccagttttcaaagtacgcagattat tacctcaatgccactcataggcagcccaggcgactcgctaaccctatcaaagtacacgct gagcggcaattggggggggccgtgctcaaagccaacattgtgccagatctggccatggta ctcgtgcctgcattccgcagccagtcacttttgacggacttaggccgacacgccatgact tacgccggctgtcaggggctcacacttaatcacttgacgatcatcctagacaaggacacc cctttatgctctgacgaggtgctctacacggcattttcccgtgcctccgagtccataacc tttgtgaacacccactctgataaccctgctttcctggccaaacttgatgccaccccatac ctcaagactctgatatcatgggttagggaggatgaggaagctggcgccgattgtcccgct actgaacccctcgttaaagatgtgcccactaagacacatatacccgtagccaatgacaag gtgcaactcgaggggaagatcgaggccatggaggacaaggacacccgagagctatggtca ggagaagaaaagaccaatctgatgcaaactcaggacccggttgtgcagctcttcccacac caacaagcaaaggacgaagctctgttcaaaataacaattggtgagcgcattcgtatggca acgcctgagcaaaacgctaagcagctacgacacacactcaatgccggcgatctactcttt gaggcgtacgcacagttcatgaaagtgcccaaggaaacgcagccctttgacaaacgttta tggactcattgccgtcaactagctctgcgcacttacctctcgaaacctacatctaacctt caacaaggggccagacaggaccctgatttcccagacaatgccatcgccctatttaacaaa tcgcaatgggtcaagaaacttgagaaagttggcgctcggttcaaagctggacaaacgata tcagcttttaaacaggaagtggtacttctaacaacgaccatggcactttacctcagaaag aaacgagagcaacaccagcccgacaacgtttttattatgtgtgaaagaacccctgaacaa ttcaacgcttttgtaatgactaagtgggactttgaccgacccaactacacttcggactac acacaatatgaccaatctcaagacgccgctttccttaacttcgaaataaggaaagcgcga catttaggtgtgcccgaagatgtcctctctttctacaagttcattaagactcatgcgaag accttcttgggcaacttggccattatgcgtctcagcgccgaagggcccacatttgacgcc aacacagagtgcaatattgcatatgacgccctcagattcaggcttggagacgacgttagg gcctcgtacgccggtgacgacctggtaagagacaaagcatgcgaagaacgcgccggctgg gtttattctgagagtttattcagtctcaaagctaaaccactcgtcacaaacaaacctgac ttctgcggctggcgactcaccagacatggcattgtcaaatcgcccatccaactctaccaa tcgttgcaactggcactcagacttggaaaaattgacgaggttaagcgaagctatgctatc gactatctgtttgcctaccgcctgggcgacaaaatatacgacatcttcgacgaagacgaa ctagaaaaacatcagttggtgactcggaccctcatcaagaaaggtatgcaacctcctgag tcgggcaaccaccttccaattttccacattacatctgatcgattgattagagatccagac gcagtgaaagtccagtcatacgagtgcgacaggatcctactgaagcagccacacatcatt gatgattatatacctgctggcactcaaccccgtaatacggaacacccagcttctgcagat cgtcgagacatgaccagagcgtgcaatctatcggctgaaaaacttgcctttgggggaaac acaatcaaccacttatttcgaacatcttgggaaggtcgttcccctctctcgaactaa

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