Viruses: 944372
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Entry
944372 CDS
T40000
Symbol
SMYEVgp1
Name
(RefSeq) Strawberry mild yellow edge virus; replicase
KO
K26615
Alphaflexiviridae RNA-directed RNA polymerase
Virus
12187
Strawberry mild yellow edge virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
RdRP_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
944372
NCBI-ProteinID:
NP_620642
RS:
NC_003794
UniProt:
P28897
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All DBs
Position
NC_003794:75..4046
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AA seq
1323 aa
AA seq
DB search
MATRVASVFSSLTDVGIKAALQDEAYKRIKSNLREAEIINPYSVDARGAEALEELAIITN
PHSIRLHTHAAAKSIENQMLNIVGHALPKEPVTFLFLKRGKLRYLSRGRIKDIFQNQEIE
PRDVARYEHKTIVQKSLLLNTRVAYISDTLHFLRPRYIIDLFSQNVFLDVLYATVVLPVE
ASFKHPSQNPAIYTINYNYGGFQYLPGNHGGGAYSHEFEDLDWLKYGKFIYRWVDYRTDP
ISGKRVGTPKELVVTCQLVESLGANHLFIFKRGDLKTPRVRTFAKDKSVTFPDLFYPEEE
NANFPVDAELATKLFLYVKTLKTVTSQDVHGKLRQLLRSDELTRFSPMQLTHMVNYFMVV
AHLDSCNDYSMLLGSSVWTQLTAPIQSKLRKLTEFFKGKSSFGKFCAALKWKTATYSLEV
VDYVETRRDSFEPHPLDSLPDADDRDVNYDTDVSEDEADEKPAPKAPTSTPVPDTTPPAS
PAAPADAEYTQCWAAWDTVIRKHGFKGNQAQFDDDGNLITPIAEIKSLPKDSPRCAPELI
KSLQEIARTPTLVEIDSKRSNAFGSDVKNGRIGMILKKQPNDWRLSFAAKCEHTSRKVHA
CVIHGAGGSGKSQRLQDWMRSLKKNSRECTVILPTAELRTDWVNKVPKQSLDTFKTWEKG
LVQPPNRVVILDDYGKLPAGYPEALCANYPNIELLILTGDSRQSVHNEHNKQAATASLES
NIEFWTQYCRFYVNATHRNVKRLANALGVYGERDEPLKVTCSSHVYDGWPVLAPGLLKAG
NLAECGRRAFTYAGCQGLTAPRVQILLDNDTPLCSQRVMYTALSRAVNEIHFVNTGPSGD
DFWTKLDCTPFLKTFLELSREIEIPEAKCQETAPAEATVKTHFPVENPNLVLEPYVEKMA
EKFDRELYSKEYGYSNAIQTEDPVIQLFPHQQAKDDTLMWATIDQRLAITTKSENETEFA
LKKDIGDLLFINYHRAMKLPKNPIPFDKDLWQSCKNEVQKTYLSKDVGSIVNGVARQDPD
FPINEIKLFLKSQWVKKVEKLGMVVKPGQTIASFAQAPVMLYGTMARYMRRMREVYQPSN
IFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDII
NSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSA
QDRTPVPRPSFNKIKDRLGLVSKPLTHRQVPGDFATFCGWIITPKGVIKDPLKLYASLQL
AIRRGKSHEVALSYAHDAGLAYRLGDDLHSVLTFDEAHAHQCTVRDLVKLNKVEVLRPIW
ALD
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggcaactagagtagcgagcgtattctcctccctcacggacgttggaattaaagcggcc
ttacaagatgaggcatacaagcgcataaaatccaacttacgtgaagccgaaatcatcaac
ccctactcggttgatgcccggggtgctgaagccctggaagaacttgccatcatcacgaac
ccacactccatcaggctacatacccatgcagccgcaaagagcattgaaaaccagatgctc
aacattgtgggccatgcgctgcctaaggaaccagtcacattccttttcctgaagcgcggc
aagttacggtatctctcccgtggaagaatcaaggacattttccaaaatcaggagatcgaa
ccgcgtgacgtagctaggtacgagcacaagactattgtacagaagtctttgcttttaaat
actagagtagcatacattagtgatactttacatttccttagacctaggtacataatagat
ttgttttcccagaatgtctttctcgacgttctatatgctactgtggtgctgcctgtagag
gccagtttcaagcacccctcacaaaaccccgccatctacacgatcaactataattatggg
gggttccaatatttacctgggaaccatggaggcggagcctactcacatgagttcgaagat
cttgactggctcaagtatgggaaattcatctacagatgggtggattaccgtactgacccc
atctcgggtaaaagggtcggcaccccgaaagagcttgtggtcacgtgccaacttgttgag
tctcttggtgccaatcacctcttcatcttcaagagaggagacttgaagactccacgcgtc
cggacctttgcaaaggacaaaagcgtgactttcccggatctgttttatccggaagaagag
aatgccaacttcccggtggacgctgagttagccaccaaactcttcctgtacgtcaagacc
ctcaagactgtcaccagtcaagatgtacatgggaagttgcgccaactgttgaggagtgat
gaactcacccggttcagtccaatgcaactgacacacatggtcaactacttcatggtagtc
gcccacctggacagttgcaatgattactccatgcttctcggcagtagtgtatggactcag
ctcacagccccaattcagtctaaactcaggaaactaactgaattcttcaagggcaagtcc
tccttcggcaaattctgtgccgctttgaagtggaaaacagccacttactctctggaggtc
gtagactacgttgaaacgcgtagggactccttcgaaccccaccctctggacagtcttcca
gacgctgacgaccgggacgtaaattatgataccgacgttagtgaagatgaggcggatgag
aaacctgcgcccaaagcgccgacctctaccccagttcccgacacaactccacccgcgagc
ccggcagccccagctgatgccgaatacacacaatgttgggctgcctgggacactgttatc
aggaaacacgggttcaagggcaaccaggcccaatttgatgatgatgggaatctcatcacc
cccattgcagagatcaagtctctgccgaaagattccccgcggtgtgcgcctgaactaatt
aagagtttgcaggaaatagcgcgtacacccactttggttgaaatagactccaaaaggagc
aatgctttcggatccgatgttaagaatgggcgaatcggaatgatcctgaagaagcagccc
aatgattggcgcctttcttttgctgcaaagtgtgaacacacgtcaaggaaagtgcatgcc
tgcgtcatccatggtgcgggaggctcaggaaagtcacaacgcctccaagattggatgagg
tctctgaagaaaaattccagagaatgcacagttatcctcccaactgcagagctgcgaacc
gactgggttaataaagtacccaagcaaagcttggacactttcaagacttgggaaaaagga
ctggtgcaaccgccgaacagggtagttatacttgatgattatgggaaattacccgcaggg
tatcctgaggccctttgtgccaactacccgaacattgagctcctgatcctgacaggagac
tccaggcagtcagttcataacgaacacaacaagcaggctgccacagcatcccttgaatcc
aatatcgagttctggacccaatactgccgtttctacgtaaacgccactcaccgcaatgtt
aagcgtctcgccaacgccttgggtgtttacggggaacgtgatgaacccctcaaagtgacc
tgcagtagtcacgtttatgatggttggccggtcctggctcctggccttctcaaagccggc
aaccttgccgaatgtgggcgccgcgcctttacatatgctggctgccaaggcctcactgct
cctagagtgcaaattttgctcgacaacgacactcccctgtgttcacagagagtgatgtat
actgcactctcaagggcggtgaatgagatccactttgtcaacactggcccgtctggagat
gatttctggacaaagttggactgcactcccttcttgaaaactttcctagaactgtctaga
gaaattgagattcctgaagcgaagtgccaagagactgctcccgctgaagcaaccgtgaag
actcatttcccggttgaaaatccaaatttggtactcgaaccatacgtcgagaaaatggcc
gaaaagttcgatagagaactgtactctaaagagtatggttattctaatgccattcagact
gaagacccggtgattcagttgttcccacaccagcaagctaaggatgacaccctgatgtgg
gccaccattgatcaaagactggccatcacgaccaagtctgagaacgaaactgagttcgct
ctcaaaaaggacatcggggacctgctcttcatcaactaccaccgtgccatgaaattgcca
aagaacccaatccctttcgacaaggacttgtggcagtcttgcaagaatgaagtccaaaag
acttatctttcgaaggatgtcggttctatagttaacggtgttgccaggcaagacccagac
tttccaatcaatgaaatcaagctcttcctgaaaagtcaatgggtcaagaaagttgagaaa
ctcggtatggtagtgaaaccgggccagactatcgcatccttcgctcaagccccggtgatg
ttgtacggtaccatggcgcgctacatgaggcgcatgcgggaggtttaccagccgtcaaat
atcttcattaattgtgagaaaacccccgctgacttggatgagtgggccaaggccaattgg
aatttcgaaggcctcgctcactccaatgacttcactgcctttgaccagtctcaagatgga
gctatgctacaattcgaggtcattaaggcaaagtttcacaacatccccagtgacattatc
aacagttatgtggaacttaagaccaatgccaaggtctttctcggggttttgaagatcatg
aggttgtcaggagaggggcctactttcgatgcaaacacagagtgctccattgcatatcac
catacaaaatattgggttgagcctgatgtcgctcaagtgtatgctggtgatgattctgcc
caggataggacccccgtacctaggcccagcttcaacaagatcaaagacaggctagggctg
gtctcaaaacctctgactcatcggcaggtcccaggagactttgccacgttttgcggctgg
ataataacgccgaagggagtgatcaaggatcctctgaaactctacgcctccctgcaatta
gctatccgccgtggaaagtctcatgaggtcgcgctttcctatgctcacgacgcaggtctc
gcttatcgcctcggcgacgacctgcactctgtgttgaccttcgatgaggcccatgctcac
caatgtactgttagagacttggtgaagttaaataaagtagaagtgttaaggcccatttgg
gcccttgattag
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