Viruses: 949147
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Entry
949147 CDS
T40000
Symbol
LyspVgp1
Name
(RefSeq) Leek yellow stripe virus; polyprotein
Virus
42004
Leek yellow stripe virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
RdRP_1
Poty_PP
Potyvirid-P3
Peptidase_C4
Peptidase_S30
DEAD
Helicase_C
ResIII
Flavi_DEAD
Cas3-like_C_2
Peptidase_C3
Peptidase_S76
RdRP_3
Motif
Other DBs
NCBI-GeneID:
949147
NCBI-ProteinID:
NP_659009
RS:
NC_004011
UniProt:
Q8UZ37
LinkDB
All DBs
Position
NC_004011:91..9549
Genome browser
AA seq
3152 aa
AA seq
DB search
MTKATFFVRNVNYGNARASALSEEDKIAQRREILGNILDRLQTNNQAPSYVFGATGYGKV
QNSKALCAKRMGARYNWDDDVYECTTCSGAFQTKLDFKEHDCDEENEDIDMTPENFSLKA
EEFPNLQADIISEPKNEDAVVFFGSFETPVPLVSATKLNEAPIIHECQQELINVSNDKLE
QGEVSVSKSIEETHVAEHKKPDPSLVSLQSRQRTKHASKKMSGNSFPELIQHLTRIVHDR
QLDVHFVGKRRLDGRCVRNNGKSYLQLQTKHTLGLKRKVDCHIPKGLEHIIHAIAKGSGY
KARTHISDIKKGWSGFVLQPKNIIGRIGKHMHDFFVVRGSSRGKLVDACARINVNETKLE
YFSAGKIIWKSFEDEFVKQRPDIKHKCTSDIEVEKCGVLAATLVQLFHPCGKITCMECIA
DATNKSSVEYITDLLTRLPLAREKVEELNAFPQVLNLLTLLEANFAKPSYNSEVYDLVLQ
SIGHIKTQPFDKLNDMNSLLVNHHGSISSPAIQRLQDDLLEVVRYTKKRTSSIDRGELQH
YRNKIASKTHFNLDLMCDNQLDKNGNFIWGERGYHAKRFFLNYFDVIDPTANYSNHIVRR
NPNGSRKLATGRLIVSTNFEAYRENLRGDKVHTHQITEECVSREGRNFVYSCSCVTHEDG
SALESRVILPTKNHLVLGNSGDPKYVDLPIDTELTLYIVKEGYCYINIFLAMLVNVREYT
GKPYTKMVRDVLVEKLGKWPTMMDVATACSFLTVFYPDTITAELPRILVDHGSRSLHVID
SYGSLDTGFHILKANTVNQILHFASMDLNSELKHYRVGGKTTDVHYVDVSPKLDMTTQTL
YMLITSIYKPTRFKQIIEQEPFTLVLSVLSPAVMRAMLNNESFERSISYWIHRDRSITQI
MALLQTLAKRIPVSNSLQDQMQFLENNVEILHRVLEKTNHTMHSRVLAGDVVRALYNKSL
TDKSLLEEGFMNTMDFSREIYEKNYQDHLQEQWQEQPLSQKLSSIIATAKYYLRSVGQTK
LVAPDLGGKAHAYTKRSLGVIAKTGNAVRESAQRCCSTWYYSIFRHVFFYSLHSIRRLCP
DLLTYCSVVGVFYYMVSLFIKIKSYLDVHKSLKELKAASEFNKKVKHLDYLYGQLCVKLN
GPPSESEFLEYINRKQPSLDQIAKLETSLGLPRMEFQAKGDFQHLEKMIALLVLLTMLFD
ANRSDAVYKILNKFKGVMSSIDKEPMLHQSLDDIQDIIEEKNLTVDFNLTDADPTINRIP
GATFSQWWKNQIERNRMLPTYRSGGHFLEFTRANASSVASTIAHEEHREILIRGAVGSGK
STSLPFHLHTKGSILLLEPTRPLAENVYKQLKGAPFFTNPTFKMRGLTQFGSSPITVMTS
GFAFHYYANNVNQLKDFDFVMFDECHCFDAQAMAFFCLLKEHEYGGKILKVSATPPGREV
EFTTQFPVDVRIEGHLSHQQFVNNLGTGANSDILSCGDNILIYVASYNEVDQLSKLLMDR
KFKVSKVDGRTMKSGKIEIITEGTSTNKHFVVATNIIENGVTLDVDVVVDFATKVVPELD
EDAHMIRYNKKSISYGERIQRMGCVGRHKRGTVLKIGETEKASWRVPPCIATEAAFYCFA
HGLPVISDGVSTSVLENCTVPQARTMMQFELSIFFMFHFVKHDGSMHPMIHDRLKQYKLR
DSEIVLNKTAIPHRGLTAWPTVEEMKRHGCSISQPDDVRLPFYIKDVPDKLYGDLYEVVK
KYNGDACFGKIRGMSACKIAYTLQTDPASIQRTIKILDKLYESELQKKAYFANVTSSSCS
SFNYALTTITNAIRARHMQDYTTENLSVIQNAKSQLLEFNNIRTPKMTEDALVDYGALEC
MMYQSENEMSDFLGLKGRWNKSVIIKDIVLASVTAVGGVLMMYEYVKGKLEEPMDYQGKN
YRQRQKLRFREAHDSKHAYEIHGDDAQLQTYFGNAYTMKGKKSGNTVGAGRKMHRFYNVY
GFEPTDYSFARYVDPLTGATLDESTVTDLSLVQDHFGTIRNQMRQSGDLEPDQISRNTTV
ECYYVNDLAKKVLKIDLTPHNPLRVSGRSNNVMGFPERTLDLRQTGAPVAVSYNQLPPSK
RDVGSFEFEGKSLLSGLRDYNPVAACVCKITNESDGVITHIFGIGYGPFIITNQHLFRRN
NGLLRIYTHAGEYLINNACTLKMHPIPERDIIIIRLPKDFTPFPQRLRFRPTRVGEHVCL
VSSNFQTKSISSVVSETSATAGTANKNFFKHWITTKHGQCGNPLVSVTDGCVVGIHSMAS
TVSSMNMYVGFPENFVDDYLSNDLLEWTKGWKLSADRSCWDGITLVDSKAEGLFKLTKEM
FTLDDGQWEFQSGNKDWMYNKLEGNLKAVGRTSGNLVTKHSVKGKCMLFQTYLSVEPGEA
EYFTPLMGAYLKSALNKEAYIKDLSKYSGEISVGNVDCDVFERAFDKVITLMESKGFHEC
AYITNEHEILASLNMKAAVGALYSGKKREYFADFSNDDKYEIVKESCKRLFLGKMGVWNG
SLKAELRPIEKVMANKTRSFTAAPLDTLLGGKVCVDDFNNQFYSRHFDLPWTVGMSKFRK
GWDTLLRKLPENWVYCDADGSQFDSSLSPYLINAVLRLRLHFMEDWDVGETMLKNLYTEI
VYTPIATPDGTIVKKFKGNNSGQPSTVVDNSLMVVFSMYYAMEMSNIVDIHNKCVFFVNG
DDLIIAVEPGSEIFLDSLQNLFHQLGLNYSFDSRTRNKEELCFMSHMGLLQDGIYIPKLD
KERIVSILEWDRAQQPEHRLEAICAAMIEAWGYPDLLDRIRKFYCWILDQAPYSELSTIG
KAPFISEAALRNLYTDCKATEFELAKYLELYDSDAPPDETFEYQAGEEFDAGAQANKNQK
SGADKAIEQRNPSTSQASTHGKNDSSSSELSMGKDKDVNVGTTGTFSVPRIKQISQKGIA
IPMDGERSILNLDHLLHYKPSQLCISNTRATRTQFMAWKARLQDEYGVTASEMSIILNGL
MVWCIENGTSPNINGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRN
SEQAYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGL
DGNVTTMDEDTERHTAHDVNARMHHLDGAHMQ
NT seq
9459 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagcaacatttttcgttagaaacgtcaactatgggaatgccagagcatcggca
ttgagcgaggaagataagatcgcgcagcggcgtgaaatacttggcaacatacttgatcgg
ttgcagactaataatcaggctccatcatatgtttttggggcaactggttacgggaaagtc
caaaatagcaaagcgttatgtgcaaagcgcatgggagcccggtataactgggacgatgat
gtatatgaatgcactacctgtagtggtgcatttcagacaaaactggactttaaggaacat
gactgcgatgaggagaatgaagacattgacatgactcctgaaaatttctctctcaaagca
gaggagtttcccaatctgcaagcagacatcattagtgagccgaagaatgaagatgccgtt
gtcttctttggaagctttgaaacacctgtgccacttgtgagtgcaaccaaacttaacgaa
gcacctattatacatgagtgtcaacaggagcttattaacgtgtcaaacgataaactagag
caaggcgaagttagcgtatcaaaaagcatagaggaaacccatgtcgcggaacacaagaaa
ccagatccgtctttggtcagcctacagagcaggcaacgtactaagcatgcatcgaaaaag
atgagtggaaacagctttcccgagttgatccaacatcttacccggatagtgcatgataga
cagctcgatgttcatttcgtaggtaagaggagattggacggtcgctgtgtgcgaaacaat
gggaagtcttacttacagctacagactaaacacactctaggtcttaagagaaaagtggat
tgccacatcccaaagggcctggagcacataatacacgcaattgcaaagggtagtggctac
aaagcacgtacccacattagtgacattaagaaaggatggagtggatttgttctgcaacca
aaaaatatcattgggcgaattgggaagcacatgcacgatttctttgtcgtgcgaggttct
tcgcgagggaagcttgttgatgcatgtgcgcgtatcaacgtgaatgaaacgaagcttgag
tattttagtgcaggtaaaatcatttggaaaagtttcgaagatgaatttgtgaagcagcgg
ccggacataaagcacaaatgcacatcagatattgaagtggagaagtgtggggtactagca
gcaacgttagtccaattatttcacccttgtgggaagataacatgcatggagtgtatagcg
gatgcgacaaacaaatcatctgttgaatacatcacagacttactcactcgattaccattg
gcaagggagaaggtagaggagcttaatgcatttccacaagtactgaatctcttaacactc
ttagaagccaactttgcgaagccttcatacaatagtgaggtatacgatctagtgttgcag
agtatcgggcacataaaaacacagccatttgataaactgaacgatatgaattcacttctc
gtgaaccatcatgggtcaatttcgagtcctgctattcaaagattacaggatgatttactt
gaagttgtgcgctatacgaagaagcggacgagctcaattgatcgtggggaattgcaacac
tataggaacaagattgcttcaaaaacacatttcaacttggatctaatgtgtgataatcaa
ctcgataagaatggaaattttatttggggggagaggggataccatgcaaagcgattcttc
ctgaactactttgatgttattgatcctacagcaaattactcaaaccatatcgtgaggcgc
aacccaaacgggtcaaggaaattagcaacaggacggctaattgtatcaacaaattttgag
gcgtatagagagaatctaagaggagataaagtgcacacgcatcaaatcacagaggagtgc
gtgagccgtgagggaagaaattttgtatatagttgttcatgcgtcacacatgaagatggt
agcgctttggagtcacgtgtcatattaccaacaaagaaccatcttgtacttggtaactct
ggcgatccaaaatatgttgatctaccgattgacactgagttgacattatacattgtgaag
gaaggatactgttacatcaacatcttcctagcaatgttggtgaacgtgcgcgaatacaca
ggcaaaccttacacaaagatggtccgggacgtgttggtggaaaaacttggtaaatggcca
actatgatggacgtcgcaacagcatgtagctttctaactgtgttctatccagatacaatt
acagcagaattaccccgaattttagtagatcacggtagtaggagtttgcatgttatagat
tcatatggttcactagacacaggatttcatatattgaaagcgaatactgtaaatcagata
ttgcactttgctagtatggatcttaattctgaactaaaacactatcgcgtgggaggtaag
acgaccgacgtgcattatgttgatgtctctccaaagcttgacatgactactcaaacgcta
tatatgttgattacaagcatctacaagcctacacgattcaagcaaatcatagagcaggaa
ccattcaccctagtgctgtcagtgttgtcaccagctgtaatgcgtgccatgttgaacaat
gaatcgtttgaaagaagcatatcctattggattcatagggatagaagcatcacacaaatc
atggcgctactgcaaactttagcaaaaagaatcccagtatccaatagcttgcaggatcag
atgcagtttctagaaaacaatgtggagatattgcatagagtacttgagaaaactaaccac
acaatgcattcaagggtcttagcgggcgatgttgtgcgagcgttatataataagagtctc
actgacaaatcgctgttggaagagggttttatgaatacgatggacttttctcgagaaatc
tatgaaaaaaattatcaggatcatttacaggagcaatggcaagagcaacctttgtcgcaa
aaattatcttcaatcattgctactgcaaagtactacttgcgaagtgttggacaaacaaag
ctcgtcgctccagatttaggaggcaaagcacatgcatacacaaagcgatcacttggtgtg
attgcaaaaacgggcaatgcagtaagagagagtgcgcaacgatgttgtagcacgtggtat
tatagcatttttaggcatgtatttttctattctctacatagtattaggcgactgtgccct
gatttattaacatattgtagcgtagttggtgtgttttattatatggtaagtttgttcatt
aaaattaagagttatctagatgttcataaatcactaaaggaattaaaagctgctagcgaa
tttaataaaaaggtgaagcatttggactatttgtatggtcagctatgtgtgaagctaaac
gggccacccagtgagagcgagtttctggaatacattaataggaagcaacctagtctagac
caaattgcaaaacttgaaacgagtctgggcttgccgaggatggagttccaagcaaaaggg
gatttccaacacctcgagaaaatgatcgctttgcttgtgttactcaccatgctctttgat
gccaatcggagtgatgcagtttataaaatattgaacaagtttaaaggcgtcatgagctcc
atcgataaggagccgatgttgcatcagagtttggatgacatacaagatataattgaagag
aaaaacctcacagttgacttcaacttaacagatgcggatcccaccattaatcgaatacct
ggtgccacattttcgcagtggtggaaaaatcagattgaacgtaaccgtatgttaccaacc
tacagatcaggaggacattttctggagttcactagggctaatgcaagcagtgtagcatcg
acaatcgcgcatgaagaacatagagagattttaattagaggagccgtgggttctgggaaa
tcaacttcgctacctttccatttgcacacaaagggttcaatcttgttgttagaaccgact
agaccattggccgaaaatgtgtacaagcagctgaagggtgcgccattcttcactaaccca
actttcaagatgagaggtttaacgcagtttggatcgtcgccaataactgtcatgactagt
ggatttgcctttcattattacgccaataacgtcaaccaattaaaggacttcgattttgtg
atgtttgatgagtgccactgtttcgatgcacaggcgatggcgttcttttgcttactaaag
gagcatgagtacggagggaaaatcctcaaagtttcagcaacacctccaggtcgtgaggta
gaatttacaacgcagttccctgttgatgtgcgtattgaaggtcatttaagtcatcagcag
tttgttaacaatttgggtacaggtgcaaatagtgatattctctcctgtggagataatatt
ctcatttatgtagccagctataacgaagttgaccaattaagcaaattactgatggatcgg
aaatttaaagtttcgaaagttgatggtcgaactatgaaaagtggcaagattgaaataatc
acggaaggtacctctactaacaagcatttcgtagtggcgacgaacataattgagaatgga
gtgacgcttgatgtggacgttgtggtggattttgcaactaaggttgttccagagcttgat
gaggatgcacacatgattcggtacaacaagaagagtatatcgtatggcgagcggatacaa
cggatgggatgtgtaggacgacacaagcgaggaacggtgctcaagattggtgagacagag
aaagctagttggcgtgtaccaccgtgtattgcaacagaggcagcgttttactgctttgca
catggtttgccggtgatctcagatggagtttccacaagcgtacttgaaaactgcacggta
ccacaagcgagaacaatgatgcagtttgaattgagcattttctttatgttccactttgta
aagcacgatggtagtatgcatccaatgatccatgatcgattaaaacaatataagttgcgt
gactcagaaattgttctgaataagacagcgattccacacagaggcctaactgcttggccc
acagtcgaggaaatgaagcgccacggttgctccataagtcaaccagatgatgtcaggcta
cctttttacattaaggatgtgccagataaactatatggtgacttgtacgaagtggtgaag
aaatacaatggtgatgcatgttttggaaagattcgaggaatgagcgcctgcaaaattgcg
tacacactacaaacagatccagcatccattcagcgaacgattaagatacttgataagttg
tatgagagtgagctacagaagaaagcatatttcgctaatgtgacatctagttcctgttca
tcttttaactacgctctcactaccatcacaaacgctattcgagctagacacatgcaagat
tatacaactgagaatctaagcgttatccagaacgcaaagagccagctacttgagttcaat
aacatacgaacgccgaaaatgacagaggatgcgttggttgactacggagctttagagtgt
atgatgtaccagtctgagaacgaaatgagtgatttcctcgggttaaaagggcgttggaac
aaaagcgtaatcataaaggatatagtgcttgcaagcgttaccgctgttggcggtgtcctt
atgatgtatgagtacgttaaagggaagctagaggaaccaatggattatcaaggaaagaat
tacaggcaacgccaaaaacttcgattccgtgaggcgcacgattcaaagcacgcttatgag
atacatggcgacgacgcccagttacaaacatattttggcaatgcatacacgatgaaaggg
aagaagtctggtaatacagttggagctggtcgcaagatgcatcgattttacaacgtctat
ggatttgaacccactgattattcatttgctcgatacgttgacccacttacaggcgccacc
ttggatgagagcactgtaacagacttaagcttagtgcaagatcattttggaactattcgg
aaccagatgcggcagagtggggatttggagccagatcaaatatcaagaaatacaacagtt
gagtgttattatgtcaatgatttggctaagaaggttttaaagattgacttaactccgcac
aatccactgcgggtgagtgggagatcaaataacgtgatgggctttccagaaaggacgcta
gatcttagacaaacaggcgcaccagttgcagtatcatataatcagttgccaccttcaaag
cgcgatgttggttcatttgaattcgaaggcaaatcattattgagtgggctccgtgactac
aaccccgtagcagcatgtgtgtgtaagataacaaatgaatcagatggagttattacacac
atcttcggtataggatatggtccattcataatcacgaatcaacatttgtttcgtagaaac
aacggactgttgcgaatctacacgcatgcaggtgaatatctcattaataacgcatgtaca
cttaaaatgcatcctatacctgagcgcgatatcattataattcgcttgccaaaggatttc
acaccatttccgcaacgtcttagatttcgaccaactcgtgtcggtgagcacgtatgccta
gttagttctaacttccaaacgaagagcatctcaagtgtcgtgtcagagacaagtgcgaca
gccggaacagcaaacaaaaatttctttaagcactggataaccacaaagcatggacaatgt
gggaaccccttggtatccgtaacagatgggtgtgtcgtcggaattcatagcatggcgagt
acagttagttcaatgaacatgtacgttggcttccctgaaaacttcgtggatgactatctt
agcaacgacttattagaatggacgaaaggatggaagctgagtgcagatcgaagttgttgg
gatggtatcacgctggtggacagcaaagctgaaggcttattcaagctcacaaaggagatg
ttcaccctcgatgatggacaatgggagtttcagtcaggcaataaggattggatgtacaac
aagttggaagggaacctgaaagctgttggtcgcacgagtgggaacttggtgactaaacat
tcggttaaagggaaatgcatgcttttccaaacatacttgtcggtggagccaggggaggca
gaatattttacaccactcatgggtgcctatttgaaaagtgcactcaacaaggaagcgtac
atcaaagacttaagtaagtattcaggtgaaattagcgttggcaatgttgattgcgatgtg
tttgaacgggcttttgacaaagttattacgttgatggagagtaagggctttcatgagtgt
gcgtacatcacaaatgagcatgaaatattggcttcgctaaatatgaaagcagctgtcggt
gctctatactctggaaagaagcgtgagtattttgcagacttctccaatgatgataaatat
gaaattgtcaaagagagttgtaagaggttgttcctaggaaagatgggtgtgtggaatggt
tccctaaaagctgaattacgaccaattgagaaggtcatggctaacaaaacacgttcattc
actgcagcacctttggatacactccttggcggaaaagtttgtgtggatgacttcaacaat
caattctacagtcgacacttcgacttgccttggacagttggtatgagtaaatttcgtaaa
gggtgggacactctactaaggaagcttcctgaaaattgggtgtattgtgatgcggatggc
tctcagttcgatagctcattgtcaccttatttgataaacgctgtccttagacttcgacta
cacttcatggaagattgggatgttggggagactatgctgaaaaacttatacacagagatt
gtgtacacaccaatagcaacaccagatggtacgatagtcaagaagttcaaggggaacaat
agtggacaaccatctactgtagttgataattcactgatggttgtcttctcaatgtattac
gctatggaaatgagcaatatagttgacatccataataaatgtgtgttctttgttaatggt
gatgatttgatcattgctgttgagccagggtctgagatctttctggatagtttacaaaat
ttgtttcaccaacttggtctaaattacagcttcgatagtcgaacacgcaataaggaagaa
ttatgcttcatgtcacacatgggtcttctacaggatggcatttatataccaaaattggat
aaagagcgtatagtgtcaatactggaatgggatcgagctcagcaacctgaacacaggtta
gaagccatctgcgcagctatgatcgaggcgtggggttatccagatctcttggatcggatt
cgaaagttttattgttggattctcgatcaagcaccatacagcgaactgagcacaataggt
aaagcaccattcatttctgaggctgctttacgcaatctctacactgattgcaaggccacg
gagtttgaactggcgaagtatctcgaattatacgatagtgatgcacctccggatgaaaca
tttgagtatcaggcaggcgaggagttcgacgcgggagcacaagcaaacaagaatcagaag
agcggtgcagacaaggcaatagagcagcggaacccatctacctcacaagctagcacacat
gggaagaatgatagcagcagttcagaactgagcatgggcaaagacaaagatgtgaatgtt
ggtaccacagggacattcagtgtaccacggataaaacaaatttcgcagaaaggcatagca
attccgatggatggagaaaggtctatactcaatttagaccacctcttacattacaaacct
agtcagttatgcatttcaaacacaagggccactaggacgcaatttatggcgtggaaagca
aggctacaggatgaatatggtgtcactgcgagcgaaatgagtattattctaaatggcctg
atggtgtggtgtatagagaatggcacttcaccaaatataaatggtgtttggacaatgatg
gatggagaggaacaggttgaatttcctttacgaccagttgtagagcacgcacaaccaact
ttgcggcaaataatggcgcacttctcggcacttgcagaagcctacattgagatgaggaat
tcagagcaagcatacatgccgaggtatggattacaaagaaatctaacagacatgagtctc
gcacggtatgcatttgacttttatgaagtcacatcaagaacaccagttagagcgcgcgag
gctcatgcacaaatgaaagcagcagctttgaggaattcaaggccaagactgtttggactg
gacggcaacgtcacaactatggatgaggacacggagaggcacacagcacatgacgtgaat
gcacggatgcaccatcttgatggtgcgcatatgcagtga
DBGET
integrated database retrieval system
