Viruses: 949162
Help
Entry
949162 CDS
T40000
Symbol
SrMVgp1
Name
(RefSeq) Sorghum mosaic virus; polyprotein
Virus
32619
Sorghum mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Peptidase_C6
Poty_coat
RdRP_1
Poty_PP
Peptidase_C4
Potyvirid-P3
Peptidase_S30
Helicase_C
DEAD
Flavi_DEAD
Cas3-like_C_2
ResIII
DDHD
Motif
Other DBs
NCBI-GeneID:
949162
NCBI-ProteinID:
NP_659391
RS:
NC_004035
UniProt:
Q8QXL2
LinkDB
All DBs
Position
NC_004035:174..9389
Genome browser
AA seq
3071 aa
AA seq
DB search
MAGAWKTVSHKWKPDLDSPRDVRKVMEHFAAKHQTYDAKRAEAHNAKRLRRTFILETSDE
IPKRAPIKKQVYVEKEDHNPTQHLKYEGFDVIKNKRVEKPVTTSVTKLIKDLLKLNQETN
INIELVGKKHNSTTRLSLVKKDKKVYLHCKTRHKMGNYKRKVTNIQAHWESYLTAVSKCY
GSLSHKDEQRIRKGDSGITYIRNGALFIIRGKHQGKIINSIEEVNFINEIDHFSDPQAND
FWRGYTDAYVANRAISTTHTEHTPTINLEKCGKRMALLEILLHSTLKITCTHCNTDDLEL
SDDEFGDKLFKTLVRIEEKQAEYLAEDQKLKRMITLLKERCNPKFEHLPLLWQVAETKGH
YTDNQSKQIMGVAEALIRVNTLKVEEAVKASASLLEISRWYKNRKESSKEDTLGSFRNKI
SPKSTIKMALMCDNQLDSNGDFLWGKREYHAKRFFTNYFEAVESKDTYDKHVTRFNPNGQ
RKLFIRKLVIPLDFQKIRDSFVGIQVQKQALSKACLRKIENNYICPCCCVTTEFGQPVYS
EIIPPTKGHITIGNPTDPKIVDLPNSDPPMMYIAKDGYCYLNIFLAAMINVNEDSAKDYT
KFLRDELIERLGKWPKLKDVATACYALSVMFPEIKNAELPQILVDHEHKTMHVIDSYGSL
SVGFHILKANTIGQLIKMQYESMESEMREYVVGGTLTHNTFSSLMKLLIKNMFKPQEMKK
IIEEEPFLIMMAVTSPTVLIAMYNNCYLEQAMSYWIVKNQGVAAIFAQLEALAKETSQAE
LIVQQMSILEKASTQLRFAVSGISHVDPAKRLLWSHLEAMTTRSEMNRELIEEGYALYDE
RLYSLMEKSYVDLLNQAWADLPLHSKLYSIWRVYEVKKYYKPCLVLKRGVDLGAMYNISA
THQISSLVQKSRDQVSSISTKLHHSLCNKIQSMQRRAISTIYWFVPDIFRLIHIFIILGL
LSTIANAVILTMQDYKKLQKQVREEEYEREVSEVRSIHAKLMKIHEDELTSEQFIAYIRE
NHPRLEEATLDLTGTGVIHEAKSNFETNLEQAMAVGTLLTMVLDPIKSDAVFKVLNKIKT
CINTYEQSATFPTVNFSSLLGTQVTHQSVELDDPLTLNTDKQLTIDFDTTQDLPADTFSN
DVTFEQWWSNQLENNRTVPHYRIGGEFVEFTRQNAATVSIGIAHNRIEKEFLLRGAVGSG
KSTGLPYHLSQRGKVLLLEPTRPLAENVCRQLQGPPFNVSPTLQMRGLSSFGSTPITIMT
SGFALHMYANNPDKISNYDYIIFDECHIMEAPAMAFYWLLKEYNFDGKIIKVSATPPGRE
CEFSTQYPVDIHVCENLTQNQFVLELGTGSKADATKYGNNILVYVASYSDVDSLARALTE
HHYSVIKVDGRTMKQNTTGIHTNGTDARKCFVVATNIIENGVTLDVDVVVDFGLKVSAEL
DVDNRAIMYRKVSISYGERIQRLGRVGRTKPGTIIRSGVTMKGLQEIPAMIATEAAFLCF
AYGLKVITHNVSTTHLAKCTVKQARTMMHFELSPFIMSELVKFDGSMHPQIHEKLKKYKL
RDSVIMLRTNAVPYSNVHNWLTVKDYNKIGCNLELGEYIKIPYFVRGVSEKLYSEIYDIV
LKYGSTNCYGRLSSACAGKVAYTLRTDPYSLPRTIAIINRLICEEHAKREHYNTMISNPS
SSHAFSLSGIVNMLASRYMKDHSKENIEKLTRVKDQLMEFQCSGSDFKNPEDLMEFGALT
TVIHQGLDATANCLQLEGRWNQSLIQRDLMISAGVFVGGALMIWCLFRKWSEMKVCHQGK
NKRSRQKLRFKQARDNKTAYDISGSQEAIGENFGTAYTKKGKNKGTKVGLGVKQHKFHMM
YGFDPQDYNLIRFVDPLTGATLDEQIHADIRIIQEHFADIREEAINNDQLERQHVYANPG
LRAFFIQHGSSNALRVDMTPHEPLRVVTNNNIAGFPEYEGTLRQTGRPIVVSINQVPEPN
EVEVEHESKSMMVGLSDYTPISNQLCIIENHSNDVRQCMYAIGYGSYLITPAHLFKYNNG
EITIRSTRGLYKMRNSIQVKIHPIECRDMTIIQLPKDFPPFPQRLKFEMPNRDHRVCLVG
VNFQQNFSSCVVSESSVVAPKGNCTFWKHWISTTDGQCGLPLVDVINKSIVGIHSLAATN
SKTNFFVTIPDNFEAYLHNLVTMNKWEMGWHYNPNLIAWNGLNLVDSAPSGKFKTAKLVK
DIMCEVTEQGLMHETWLTNDIKDNLQVVAKCPGQLVTKHVVKGQCPHFSLYLSTHEDANT
FFKPLLGKYDKSRLNKAAFIKDLTKYAKPTYIGEVDPKTFQKAVDRVKEILWKVGMQTCN
YITDEEEIFKSLNMNAAVGALYTGKKKDYFMDFSDTDKEEILKQSCERLYEGQLGVWNGS
LKAEIRPIEKTEANKTRSFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGG
WDRLLNKLPEGWVYCDADGSQFDSSLTPYLINAVLDIRLHFMEDWNIGERMLKNLYTEIV
YTPIATPDGSVIKKFKGNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICRMYAN
GDDLLLAIRPDYEHLLDDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAKE
GLAPYIAETALRNLYTGAGIKEGELDIYYTQFIKDLPEYVEDELIDVFHQAGGGTVDAGA
NTADATAQAQREAAAKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDARAKADADAKKR
ADDEAAQRTQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGRNILHLDFLLGYKPQQ
QDISNTRATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDG
EEQRTFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDFNLAR
YAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTAGDVSRN
MHTLLGVQQHH
NT seq
9216 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcgtggaaaactgtttcgcacaagtggaagccggatttggacagtccgagg
gatgtcagaaaggttatggaacacttcgcagccaagcaccaaacttatgatgcaaagaga
gctgaagcccataacgctaaaagactccggagaacgtttatactagaaacgtctgatgag
attcccaagagagcccctattaagaaacaggtttatgtcgagaaggaagatcacaatccg
acacagcaccttaaatatgaagggttcgatgtgattaaaaacaaacgtgttgagaaacct
gttacaacatcagttacaaaactgataaaagatttgctcaaactcaaccaagagacaaac
ataaacatcgagctggttggtaagaagcataatagcactacacgtttatctttagttaag
aaagacaaaaaggtgtacctgcactgcaaaacacgacataagatgggtaactacaagcgc
aaggttactaatattcaggcgcactgggaatcatacctcactgctgtgtctaagtgctat
ggttcattatcacataaagatgaacagagaattagaaaaggggatagcggtataacatac
atccggaatggtgctctatttataatacggggaaaacaccaaggaaaaataatcaatagt
atagaagaagtaaacttcattaatgagattgatcattttagtgacccacaagcaaatgat
ttttggcgagggtacacggatgcatacgttgcaaatagggctatctcgaccacacatacg
gagcacacaccgacaattaatttggaaaaatgcgggaaaagaatggctttgttagaaatt
ttactccattcaacactcaaaatcacatgcacacattgtaatactgatgatctcgaatta
tctgatgatgaatttggagataaactctttaaaacactggtgcgaattgaagaaaaacaa
gccgagtaccttgcagaagaccagaagctgaaacgtatgatcacattactaaaggaaaga
tgtaatcccaagttcgaacatttaccactactttggcaagtggcagagacgaaaggacac
tatacagataaccaatcaaagcaaatcatgggtgttgcagaggccctaattagagtaaac
acattaaaggttgaagaagccgtaaaagcaagcgcgtcattactcgagatctcccggtgg
tataaaaatcgcaaagagtcttctaaagaagacaccttaggatcattcaggaataaaatt
tcacctaagagtactattaaaatggcgttaatgtgtgataatcaattagactcgaatgga
gatttcctgtggggaaagcgagagtatcatgctaagcgattctttacaaactactttgaa
gcagttgaatcaaaggacacatatgataaacatgtaactaggtttaatcccaatggacaa
aggaaattatttataagaaaattggtgattcctcttgatttccagaaaattcgtgattca
tttgttggaattcaggttcagaaacaagcacttagcaaagcgtgtctaagaaagattgag
aacaattacatatgtccttgctgttgtgtaaccacagaatttggtcaaccggtttactca
gaaataataccaccaactaaagggcacattactatcggaaatccaacagacccaaaaatt
gtggatttgcccaactccgacccgcctatgatgtatatagcgaaagatggctattgttat
ttgaatatttttctagctgctatgatcaacgtgaatgaagattcagcgaaagattataca
aaatttttgcgcgatgaattgattgaaagacttggaaaatggcctaaactcaaagacgtt
gcaacagcatgttatgcattatcagtcatgtttccagaaattaagaacgcagaacttcca
caaattcttgtagatcatgaacataaaaccatgcatgtaattgattcttatggttctctt
agcgttggtttccatattttaaaagcaaatacaataggacaactcattaaaatgcagtat
gaatctatggaaagcgaaatgagagagtatgtagttggtggaactttaacacacaacact
tttagttctctaatgaagttattgattaagaacatgtttaaaccacaagagatgaagaaa
atcatagaagaagaacctttcctaataatgatggccgtcacttccccgaccgtactaatc
gcaatgtataacaattgttacttagaacaagcaatgtcgtattggatagttaagaatcaa
ggagtggcagcaatctttgcacaactagaagcacttgcaaaagagacatcgcaagcagag
ttaatcgtacagcaaatgtccatactggagaaggcctcaacacagcttagattcgcagta
tcagggattagccatgttgaccctgcaaagagattgctgtggtcacatcttgaggcgatg
acaacgcggtctgagatgaatagagaattaatagaggaaggatacgcattatatgacgaa
cgcctatattcattgatggaaaaaagttacgtcgatctcttaaaccaagcatgggcagat
ttgccattacattcaaaattatattcaatttggcgtgtgtacgaagtcaagaaatattac
aagccgtgcttagtcctgaaaagaggcgtagatttaggcgcaatgtacaatatctcagct
acgcatcaaatatcaagtttagtgcagaaaagtcgagatcaagtcagctctatttcaacc
aaactccaccacagtttatgtaataaaatacaaagcatgcaaagaagagcgataagtact
atttactggtttgtacctgatatctttagacttattcatatatttattatattaggttta
ctttcgactattgcaaatgcagttattttaacaatgcaggattacaagaaattacaaaaa
caagttagagaagaggaatatgaacgagaagttagcgaagtgagatccattcatgcaaag
ttaatgaaaatccacgaagacgaactcacaagtgaacagttcatagcatacattagagag
aatcatccaagacttgaggaggcgactttggacctcacaggtactggtgttattcacgaa
gcaaaatcaaattttgaaactaatctagaacaagctatggcagttggaacactcctcacg
atggtgctcgatcctatcaagagcgatgcagttttcaaagttttgaataaaattaaaaca
tgcattaatacgtatgaacaaagcgcaacattcccaacagttaatttctcatctttattg
ggaacacaagtaacacatcaaagtgtggaattagacgacccattaacgttgaatactgat
aagcaactaacgatagactttgatacaacacaagatcttccggcggatacatttagtaat
gatgtaacttttgagcaatggtggtctaatcagttggaaaataacagaacagttccacac
taccgcattggtggcgaattcgtagagtttacacgacaaaacgcagcaacagttagcata
gggatagcacacaatcgaattgaaaaggagtttctattgcgtggagctgtgggttcagga
aaatcaacagggttaccgtaccatttgagtcaacgaggaaaagttcttttgctggaacca
actcgtcccttagcggagaatgtttgtaggcaattacagggacccccatttaatgttagc
ccaactttgcaaatgagaggtttaagttcttttgggtccactccgataaccataatgaca
tcgggattcgcactacacatgtatgcaaacaacccagacaaaattagtaactacgattac
atcatttttgatgaatgtcatataatggaagcaccagcaatggctttctattggttactc
aaggaatacaatttcgatggcaaaatcataaaagtctcagcgaccccaccaggaagggag
tgcgaattctcaactcagtatccagtagatatacacgtttgtgaaaatttaactcagaat
caatttgttttggagttgggcactggatctaaagcagacgcaacgaaatatggaaacaac
attcttgtatacgttgcaagttatagtgatgtagattccctagcacgagcgcttacagaa
catcattattcagtcattaaagttgacggaagaacaatgaaacagaatacaacaggaatc
catacaaatggaactgatgctagaaagtgttttgtggttgccactaacattatcgaaaat
ggcgttacactagatgtcgatgttgtggtggatttcggtctcaaagtttccgctgaatta
gatgtcgataatcgagcgataatgtatcgaaaggttagcatatcgtacggtgaacgaatc
cagagacttggaagagttggacgaaccaaacctgggactattattagatcgggtgtgaca
atgaaaggattacaggagattccagctatgatagccacagaagcagcctttttatgtttt
gcatatggactcaaagttataactcataatgtttcaaccacccatttggcgaaatgtaca
gtaaaacaagcaagaactatgatgcatttcgaactttcacctttcataatgtctgaatta
gttaaatttgatggctcaatgcatcctcaaatacatgagaagctcaagaaatacaaactt
agggattcagttataatgctcagaacaaatgcagtcccttactcgaacgtccacaactgg
ttaaccgttaaggactacaataagataggatgcaatctcgagttgggtgaatatataaaa
attccatattttgttagaggtgtatcagaaaaactgtacagtgaaatatatgatattgtt
cttaagtatggctcaacaaattgttatggtagactttcgagcgcctgtgcaggaaaagtg
gcatacactctgagaaccgatccttactcgttaccgcgaacgattgcaatcataaacaga
ttaatctgtgaagaacatgcaaagagagagcattataatacaatgatttcaaatccttcc
tcctcacatgctttttcattgagtggaatagtcaacatgcttgcttcaagatatatgaaa
gatcactcaaaggaaaacatcgagaaactcacaagagtgaaggatcagcttatggaattc
caatgttcaggtagcgattttaagaatccagaggatttaatggaatttggagcattgaca
acagttatacatcaaggtcttgatgcgacagcaaattgcttgcagttagaagggcgatgg
aatcaatctttgattcaaagagatctgatgatatcggctggagttttcgttggtggcgca
ctaatgatctggtgtttatttcgaaaatggtcagagatgaaagtatgtcatcaaggtaaa
aacaagaggagtaggcaaaaattacgattcaagcaagctcgggataacaagacagcatat
gacatttctggctcgcaagaggcgataggagaaaattttggaacagcctacacaaagaaa
ggcaaaaacaagggaacaaaggttggacttggagtgaaacaacataaattccacatgatg
tatggattcgacccacaagattataatctaattcgatttgtcgatcctctaacaggagca
acattagatgagcaaatccacgctgatataagaataattcaagaacattttgccgatatc
agagaggaagccattaataacgatcagctagaacgtcagcatgtgtatgcaaacccagga
ttgcgagcctttttcatacagcacggatcatcaaatgcactgcgagttgacatgacacca
catgaaccattacgtgtcgtgaccaataataatatagcaggattccccgagtatgaagga
acactacgccagacaggaagaccaatagtagtatcaatcaatcaagtgccggaaccgaac
gaggttgaagtagaacatgaatctaaatcaatgatggttggattgagtgactacacgccg
atttcaaaccaattgtgcatcattgagaatcactcgaacgatgtgagacaatgtatgtat
gcgataggttatggttcatatctgataactccagctcatctgtttaagtataacaatgga
gagataacaataagatcaacaagaggattgtataaaatgcgtaattcaattcaagtcaaa
attcatccgattgaatgtagggacatgacaataatacagctgccaaaggattttccacct
ttccctcaaagacttaaatttgaaatgcctaaccgagaccatcgagtgtgtctcgttgga
gtcaacttccaacaaaatttctcatcttgtgtagtatctgaaagtagtgtggtagcacca
aaaggaaattgcacattctggaaacattggatttcaacaacagatggccaatgtggtcta
cctttagtggatgtaattaacaaatcgatagttggcatacacagtctagctgcaacgaat
tcaaaaaccaatttctttgtaactatacctgacaattttgaagcgtacttacacaatttg
gtaacaatgaacaagtgggaaatgggttggcattataacccaaatctaattgcatggaat
ggattaaatctcgtggactcagctccttctggtaaattcaaaacagctaaactcgtaaaa
gacataatgtgcgaagttacagaacaaggattgatgcacgaaacgtggcttacaaatgat
atcaaagacaaccttcaagtggttgcaaagtgtccaggtcagttggtaacaaaacatgtc
gtcaaaggacaatgcccccacttttccctttatttatcgacacacgaggatgcgaatact
ttctttaaaccattacttgggaaatatgacaagagtagattgaacaaagcagcattcatt
aaagatctcacaaaatatgcaaagccaacatacatcggtgaagtagatccaaagactttt
caaaaagcagtcgatagggtgaaagaaatactatggaaagttggaatgcaaacgtgcaat
tacatcacagatgaagaagagattttcaaatcattgaacatgaatgcagcagttggagca
ttatacactggaaagaaaaaggattactttatggatttttcagacactgacaaagaggaa
attctcaaacaatcatgtgaacgtttatacgaagggcaacttggagtttggaatggttct
cttaaagcagaaattcgaccaattgagaaaacagaagcaaataagacaagatccttcaca
gcagctccattggaaacattacttggcgggaaagtgtgcgtagatgactttaacaatcaa
ttctattcgcatcatttggaaggaccttggactgtaggaattacaaaattctatggaggt
tgggatagactcttaaacaagctccctgagggttgggtttactgtgatgcagacggttca
caattcgatagttctttaacgccttatcttatcaacgcggttttagacatcagattgcat
ttcatggaggattggaacattggggaaagaatgctcaaaaatctctatacagaaatcgtc
tacactcctatagcaacaccagatggatccgtaattaagaaattcaaaggaaataatagt
ggacaaccatctactgttgttgacaacacattaatggtgatcatagcttttaactacacg
atgctatcttgcgggattgaagcagatatgatagatgagatatgcagaatgtatgcgaat
ggagatgatcttctattagccattcgaccagattacgaacacctgttggatgatttctcc
aaacacttctctgatctaggattaaactttgatttcacatcacgaactagagatagagaa
gaactatggttcatgtcaacacgaggcatcaaaatagatggaatgtacatcccaaaattg
gagcaggaaagaatagttgctatattagagtgggatagatcattgttacctcaatataga
ttagaagcgatatgtgctgccatggtggaagcttggggttatccacaattattacatgag
attagaaaattttatgcttggattctcgaaatgcaaccatttgctacactggcaaaagaa
ggactcgctccatacatagcagaaacagctctacgcaatctttacacaggagcaggaatc
aaagaaggggaattagatatttattatacacaatttatcaaagatttacctgagtatgtg
gaagatgagttaattgatgtgtttcatcaagcagggggcggtacggtggatgcgggagcc
aatacagcagatgcaacggcacaagcacaacgagaggctgcagcaaaagcccaacaggat
gccgatgcgaaaaagagagcagatgatgaagcagcagagaaacagagacaagatgctgct
gcaaagaagaaagctgacgatgatgctagagcaaaagcggatgctgatgcgaaaaagaga
gcagatgatgaagcagcgcaaagaacacaaaatcagaaagataaagacgttgatgctgga
acgtcaggcacagtcacagtaccaaaactcaaagctatgtccaagaagatgcgtttgcca
caagcgaaaggaaggaatattttacatcttgatttcctacttgggtataagccacaacag
caagacatctcaaacacacgagcaacacgagcagagtttgataggtggtacgcagccgta
caaaaagaatatgaacttgatgacacacaaatgacagttgttatgagcggactaatggta
tggtgcatagaaaatggttgctcaccgaacatcaatggtgtttggaccatgatggatgga
gaagaacaaagaacatttcctttaaagccaataattgaaaatgcttctccaacatttagg
cagattatgcatcactttagtgatgcagctgaagcgtatatagaataccgtaactcaacg
gaacgctacatgccaagatacggacttcagcgaaacttgaccgacttcaatttagcacgt
tatgcttttgatttctacgagatcacatcacgtacaacagcccgtgctaaggaggcccac
atgcagatgaaagctgcagcagttcgtggttcaaatacccggatgttcggcttggatgga
aatgttggcgagtctcaggagaatactgaacgtcacactgctggcgacgtgagtcgtaac
atgcatacccttcttggggtgcaacagcaccactga
DBGET
integrated database retrieval system
