Viruses: 951475
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Entry
951475 CDS
T40000
Symbol
POLY, HCVgp1
Name
(RefSeq) Hepatitis C virus genotype 1; polyprotein
KO
K19358
Hepatitis C virus polyprotein
Virus
41856
Hepatitis C virus genotype 1
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
HCV_NS1
HCV_NS5a_C
RdRP_3
HCV_env
NS3_helicase_C
HCV_NS2
HCV_NS4b
Peptidase_S29
HCV_capsid
HCV_core
HCV_NS5a_1b
HCV_NS5a_1a
HCV_NS4a
HCV_NS5a
Flavi_DEAD
Helicase_C
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
951475
NCBI-ProteinID:
NP_671491
RS:
NC_004102
UniProt:
P27958
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_004102:342..9377
Genome browser
AA seq
3011 aa
AA seq
DB search
MSTNPKPQRKTKRNTNRRPQDVKFPGGGQIVGGVYLLPRRGPRLGVRATRKTSERSQPRG
RRQPIPKARRPEGRTWAQPGYPWPLYGNEGCGWAGWLLSPRGSRPSWGPTDPRRRSRNLG
KVIDTLTCGFADLMGYIPLVGAPLGGAARALAHGVRVLEDGVNYATGNLPGCSFSIFLLA
LLSCLTVPASAYQVRNSSGLYHVTNDCPNSSIVYEAADAILHTPGCVPCVREGNASRCWV
AVTPTVATRDGKLPTTQLRRHIDLLVGSATLCSALYVGDLCGSVFLVGQLFTFSPRRHWT
TQDCNCSIYPGHITGHRMAWDMMMNWSPTAALVVAQLLRIPQAIMDMIAGAHWGVLAGIA
YFSMVGNWAKVLVVLLLFAGVDAETHVTGGSAGRTTAGLVGLLTPGAKQNIQLINTNGSW
HINSTALNCNESLNTGWLAGLFYQHKFNSSGCPERLASCRRLTDFAQGWGPISYANGSGL
DERPYCWHYPPRPCGIVPAKSVCGPVYCFTPSPVVVGTTDRSGAPTYSWGANDTDVFVLN
NTRPPLGNWFGCTWMNSTGFTKVCGAPPCVIGGVGNNTLLCPTDCFRKHPEATYSRCGSG
PWITPRCMVDYPYRLWHYPCTINYTIFKVRMYVGGVEHRLEAACNWTRGERCDLEDRDRS
ELSPLLLSTTQWQVLPCSFTTLPALSTGLIHLHQNIVDVQYLYGVGSSIASWAIKWEYVV
LLFLLLADARVCSCLWMMLLISQAEAALENLVILNAASLAGTHGLVSFLVFFCFAWYLKG
RWVPGAVYAFYGMWPLLLLLLALPQRAYALDTEVAASCGGVVLVGLMALTLSPYYKRYIS
WCMWWLQYFLTRVEAQLHVWVPPLNVRGGRDAVILLMCVVHPTLVFDITKLLLAIFGPLW
ILQASLLKVPYFVRVQGLLRICALARKIAGGHYVQMAIIKLGALTGTYVYNHLTPLRDWA
HNGLRDLAVAVEPVVFSRMETKLITWGADTAACGDIINGLPVSARRGQEILLGPADGMVS
KGWRLLAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWT
VYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVI
PVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVEN
LETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAA
TLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHS
TDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGEIPFYGKAI
PLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVSTDAL
MTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYR
FVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEG
VFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHG
PTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEVVTSTWVLVGGVLAALAAYCLSTGCV
VIVGRIVLSGKPAIIPDREVLYQEFDEMEECSQHLPYIEQGMMLAEQFKQKALGLLQTAS
RQAEVITPAVQTNWQKLEVFWAKHMWNFISGIQYLAGLSTLPGNPAIASLMAFTAAVTSP
LTTGQTLLFNILGGWVAAQLAAPGAATAFVGAGLAGAAIGSVGLGKVLVDILAGYGAGVA
GALVAFKIMSGEVPSTEDLVNLLPAILSPGALVVGVVCAAILRRHVGPGEGAVQWMNRLI
AFASRGNHVSPTHYVPESDAAARVTAILSSLTVTQLLRRLHQWISSECTTPCSGSWLRDI
WDWICEVLSDFKTWLKAKLMPQLPGIPFVSCQRGYRGVWRGDGIMHTRCHCGAEITGHVK
NGTMRIVGPRTCRNMWSGTFPINAYTTGPCTPLPAPNYKFALWRVSAEEYVEIRRVGDFH
YVSGMTTDNLKCPCQIPSPEFFTELDGVRLHRFAPPCKPLLREEVSFRVGLHEYPVGSQL
PCEPEPDVAVLTSMLTDPSHITAEAAGRRLARGSPPSMASSSASQLSAPSLKATCTANHD
SPDAELIEANLLWRQEMGGNITRVESENKVVILDSFDPLVAEEDEREVSVPAEILRKSRR
FARALPVWARPDYNPPLVETWKKPDYEPPVVHGCPLPPPRSPPVPPPRKKRTVVLTESTL
STALAELATKSFGSSSTSGITGDNTTTSSEPAPSGCPPDSDVESYSSMPPLEGEPGDPDL
SDGSWSTVSSGADTEDVVCCSMSYSWTGALVTPCAAEEQKLPINALSNSLLRHHNLVYST
TSRSACQRQKKVTFDRLQVLDSHYQDVLKEVKAAASKVKANLLSVEEACSLTPPHSAKSK
FGYGAKDVRCHARKAVAHINSVWKDLLEDSVTPIDTTIMAKNEVFCVQPEKGGRKPARLI
VFPDLGVRVCEKMALYDVVSKLPLAVMGSSYGFQYSPGQRVEFLVQAWKSKKTPMGFSYD
TRCFDSTVTESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVGGPLTNSRGENCGYRRCR
ASGVLTTSCGNTLTCYIKARAACRAAGLQDCTMLVCGDDLVVICESAGVQEDAASLRAFT
EAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDGAGKRVYYLTRDPTTPLARAAWETA
RHTPVNSWLGNIIMFAPTLWARMILMTHFFSVLIARDQLEQALNCEIYGACYSIEPLDLP
PIIQRLHGLSAFSLHSYSPGEINRVAACLRKLGVPPLRAWRHRARSVRARLLSRGGRAAI
CGKYLFNWAVRTKLKLTPIAAAGRLDLSGWFTAGYSGGDIYHSVSHARPRWFWFCLLLLA
AGVGIYLLPNR
NT seq
9036 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaatcctaaacctcaaagaaaaaccaaacgtaacaccaaccgtcgcccacag
gacgtcaagttcccgggtggcggtcagatcgttggtggagtttacttgttgccgcgcagg
ggccctagattgggtgtgcgcgcgacgaggaagacttccgagcggtcgcaacctcgaggt
agacgtcagcctatccccaaggcacgtcggcccgagggcaggacctgggctcagcccggg
tacccttggcccctctatggcaatgagggttgcgggtgggcgggatggctcctgtctccc
cgtggctctcggcctagctggggccccacagacccccggcgtaggtcgcgcaatttgggt
aaggtcatcgatacccttacgtgcggcttcgccgacctcatggggtacataccgctcgtc
ggcgcccctcttggaggcgctgccagggccctggcgcatggcgtccgggttctggaagac
ggcgtgaactatgcaacagggaaccttcctggttgctctttctctatcttccttctggcc
ctgctctcttgcctgactgtgcccgcttcagcctaccaagtgcgcaattcctcggggctt
taccatgtcaccaatgattgccctaactcgagtattgtgtacgaggcggccgatgccatc
ctgcacactccggggtgtgtcccttgcgttcgcgagggtaacgcctcgaggtgttgggtg
gcggtgacccccacggtggccaccagggacggcaaactccccacaacgcagcttcgacgt
catatcgatctgcttgtcgggagcgccaccctctgctcggccctctacgtgggggacctg
tgcgggtctgtctttcttgttggtcaactgtttaccttctctcccaggcgccactggacg
acgcaagactgcaattgttctatctatcccggccatataacgggtcatcgcatggcatgg
gatatgatgatgaactggtcccctacggcagcgttggtggtagctcagctgctccggatc
ccacaagccatcatggacatgatcgctggtgctcactggggagtcctggcgggcatagcg
tatttctccatggtggggaactgggcgaaggtcctggtagtgctgctgctatttgccggc
gtcgacgcggaaacccacgtcaccgggggaagtgccggccgcaccacggctgggcttgtt
ggtctccttacaccaggcgccaagcagaacatccaactgatcaacaccaacggcagttgg
cacatcaatagcacggccttgaactgcaatgaaagccttaacaccggctggttagcaggg
ctcttctatcagcacaaattcaactcttcaggctgtcctgagaggttggccagctgccga
cgccttaccgattttgcccagggctggggtcctatcagttatgccaacggaagcggcctc
gacgaacgcccctactgctggcactaccctccaagaccttgtggcattgtgcccgcaaag
agcgtgtgtggcccggtatattgcttcactcccagccccgtggtggtgggaacgaccgac
aggtcgggcgcgcctacctacagctggggtgcaaatgatacggatgtcttcgtccttaac
aacaccaggccaccgctgggcaattggttcggttgtacctggatgaactcaactggattc
accaaagtgtgcggagcgcccccttgtgtcatcggaggggtgggcaacaacaccttgctc
tgccccactgattgtttccgcaagcatccggaagccacatactctcggtgcggctccggt
ccctggattacacccaggtgcatggtcgactacccgtataggctttggcactatccttgt
accatcaattacaccatattcaaagtcaggatgtacgtgggaggggtcgagcacaggctg
gaagcggcctgcaactggacgcggggcgaacgctgtgatctggaagacagggacaggtcc
gagctcagcccattgctgctgtccaccacacagtggcaggtccttccgtgttctttcacg
accctgccagccttgtccaccggcctcatccacctccaccagaacattgtggacgtgcag
tacttgtacggggtagggtcaagcatcgcgtcctgggccattaagtgggagtacgtcgtt
ctcctgttcctcctgcttgcagacgcgcgcgtctgctcctgcttgtggatgatgttactc
atatcccaagcggaggcggctttggagaacctcgtaatactcaatgcagcatccctggcc
gggacgcacggtcttgtgtccttcctcgtgttcttctgctttgcgtggtatctgaagggt
aggtgggtgcccggagcggtctacgccttctacgggatgtggcctctcctcctgctcctg
ctggcgttgcctcagcgggcatacgcactggacacggaggtggccgcgtcgtgtggcggc
gttgttcttgtcgggttaatggcgctgactctgtcgccatattacaagcgctacatcagc
tggtgcatgtggtggcttcagtattttctgaccagagtagaagcgcaactgcacgtgtgg
gttccccccctcaacgtccggggggggcgcgatgccgtcatcttactcatgtgtgttgta
cacccgactctggtatttgacatcaccaaactactcctggccatcttcggacccctttgg
attcttcaagccagtttgcttaaagtcccctacttcgtgcgcgttcaaggccttctccgg
atctgcgcgctagcgcggaagatagccggaggtcattacgtgcaaatggccatcatcaag
ttaggggcgcttactggcacctatgtgtataaccatctcacccctcttcgagactgggcg
cacaacggcctgcgagatctggccgtggctgtggaaccagtcgtcttctcccgaatggag
accaagctcatcacgtggggggcagataccgccgcgtgcggtgacatcatcaacggcttg
cccgtctctgcccgtaggggccaggagatactgcttgggccagccgacggaatggtctcc
aaggggtggaggttgctggcgcccatcacggcgtacgcccagcagacgagaggcctccta
gggtgtataatcaccagcctgactggccgggacaaaaaccaagtggagggtgaggtccag
atcgtgtcaactgctacccaaaccttcctggcaacgtgcatcaatggggtatgctggact
gtctaccacggggccggaacgaggaccatcgcatcacccaagggtcctgtcatccagatg
tataccaatgtggaccaagaccttgtgggctggcccgctcctcaaggttcccgctcattg
acaccctgcacctgcggctcctcggacctttacctggtcacgaggcacgccgatgtcatt
cccgtgcgccggcgaggtgatagcaggggtagcctgctttcgccccggcccatttcctac
ttgaaaggctcctcggggggtccgctgttgtgccccgcgggacacgccgtgggcctattc
agggccgcggtgtgcacccgtggagtggctaaggcggtggactttatccctgtggagaac
ctagagacaaccatgagatccccggtgttcacggacaactcctctccaccagcagtgccc
cagagcttccaggtggcccacctgcatgctcccaccggcagcggtaagagcaccaaggtc
ccggctgcgtacgcagcccagggctacaaggtgttggtgctcaacccctctgttgctgca
acgctgggctttggtgcttacatgtccaaggcccatggggttgatcctaatatcaggacc
ggggtgagaacaattaccactggcagccccatcacgtactccacctacggcaagttcctt
gccgacggcgggtgctcaggaggtgcttatgacataataatttgtgacgagtgccactcc
acggatgccacatccatcttgggcatcggcactgtccttgaccaagcagagactgcgggg
gcgagactggttgtgctcgccactgctacccctccgggctccgtcactgtgtcccatcct
aacatcgaggaggttgctctgtccaccaccggagagatccctttttacggcaaggctatc
cccctcgaggtgatcaaggggggaagacatctcatcttctgccactcaaagaagaagtgc
gacgagctcgccgcgaagctggtcgcattgggcatcaatgccgtggcctactaccgcggt
cttgacgtgtctgtcatcccgaccagcggcgatgttgtcgtcgtgtcgaccgatgctctc
atgactggctttaccggcgacttcgactctgtgatagactgcaacacgtgtgtcactcag
acagtcgatttcagccttgaccctacctttaccattgagacaaccacgctcccccaggat
gctgtctccaggactcaacgccggggcaggactggcagggggaagccaggcatctacaga
tttgtggcaccgggggagcgcccctccggcatgttcgactcgtccgtcctctgtgagtgc
tatgacgcgggctgtgcttggtatgagctcacgcccgccgagactacagttaggctacga
gcgtacatgaacaccccggggcttcccgtgtgccaggaccatcttgaattttgggagggc
gtctttacgggcctcactcatatagatgcccactttctatcccagacaaagcagagtggg
gagaactttccttacctggtagcgtaccaagccaccgtgtgcgctagggctcaagcccct
cccccatcgtgggaccagatgtggaagtgtttgatccgccttaaacccaccctccatggg
ccaacacccctgctatacagactgggcgctgttcagaatgaagtcaccctgacgcaccca
atcaccaaatacatcatgacatgcatgtcggccgacctggaggtcgtcacgagcacctgg
gtgctcgttggcggcgtcctggctgctctggccgcgtattgcctgtcaacaggctgcgtg
gtcatagtgggcaggattgtcttgtccgggaagccggcaattatacctgacagggaggtt
ctctaccaggagttcgatgagatggaagagtgctctcagcacttaccgtacatcgagcaa
gggatgatgctcgctgagcagttcaagcagaaggccctcggcctcctgcagaccgcgtcc
cgccaagcagaggttatcacccctgctgtccagaccaactggcagaaactcgaggtcttc
tgggcgaagcacatgtggaatttcatcagtgggatacaatacttggcgggcctgtcaacg
ctgcctggtaaccccgccattgcttcattgatggcttttacagctgccgtcaccagccca
ctaaccactggccaaaccctcctcttcaacatattgggggggtgggtggctgcccagctc
gccgcccccggtgccgctaccgcctttgtgggcgctggcttagctggcgccgccatcggc
agcgttggactggggaaggtcctcgtggacattcttgcagggtatggcgcgggcgtggcg
ggagctcttgtagcattcaagatcatgagcggtgaggtcccctccacggaggacctggtc
aatctgctgcccgccatcctctcgcctggagcccttgtagtcggtgtggtctgcgcagca
atactgcgccggcacgttggcccgggcgagggggcagtgcaatggatgaaccggctaata
gccttcgcctcccgggggaaccatgtttcccccacgcactacgtgccggagagcgatgca
gccgcccgcgtcactgccatactcagcagcctcactgtaacccagctcctgaggcgactg
catcagtggataagctcggagtgtaccactccatgctccggttcctggctaagggacatc
tgggactggatatgcgaggtgctgagcgactttaagacctggctgaaagccaagctcatg
ccacaactgcctgggattccctttgtgtcctgccagcgcgggtataggggggtctggcga
ggagacggcattatgcacactcgctgccactgtggagctgagatcactggacatgtcaaa
aacgggacgatgaggatcgtcggtcctaggacctgcaggaacatgtggagtgggacgttc
cccattaacgcctacaccacgggcccctgtactccccttcctgcgccgaactataagttc
gcgctgtggagggtgtctgcagaggaatacgtggagataaggcgggtgggggacttccac
tacgtatcgggtatgactactgacaatcttaaatgcccgtgccagatcccatcgcccgaa
tttttcacagaattggacggggtgcgcctacataggtttgcgcccccttgcaagcccttg
ctgcgggaggaggtatcattcagagtaggactccacgagtacccggtggggtcgcaatta
ccttgcgagcccgaaccggacgtagccgtgttgacgtccatgctcactgatccctcccat
ataacagcagaggcggccgggagaaggttggcgagagggtcacccccttctatggccagc
tcctcggccagccagctgtccgctccatctctcaaggcaacttgcaccgccaaccatgac
tcccctgacgccgagctcatagaggctaacctcctgtggaggcaggagatgggcggcaac
atcaccagggttgagtcagagaacaaagtggtgattctggactccttcgatccgcttgtg
gcagaggaggatgagcgggaggtctccgtacccgcagaaattctgcggaagtctcggaga
ttcgcccgggccctgcccgtttgggcgcggccggactacaaccccccgctagtagagacg
tggaaaaagcctgactacgaaccacctgtggtccatggctgcccgctaccacctccacgg
tcccctcctgtgcctccgcctcggaaaaagcgtacggtggtcctcaccgaatcaacccta
tctactgccttggccgagcttgccaccaaaagttttggcagctcctcaacttccggcatt
acgggcgacaatacgacaacatcctctgagcccgccccttctggctgcccccccgactcc
gacgttgagtcctattcttccatgccccccctggagggggagcctggggatccggatctc
agcgacgggtcatggtcgacggtcagtagtggggccgacacggaagatgtcgtgtgctgc
tcaatgtcttattcctggacaggcgcactcgtcaccccgtgcgctgcggaagaacaaaaa
ctgcccatcaacgcactgagcaactcgttgctacgccatcacaatctggtgtattccacc
acttcacgcagtgcttgccaaaggcagaagaaagtcacatttgacagactgcaagttctg
gacagccattaccaggacgtgctcaaggaggtcaaagcagcggcgtcaaaagtgaaggct
aacttgctatccgtagaggaagcttgcagcctgacgcccccacattcagccaaatccaag
tttggctatggggcaaaagacgtccgttgccatgccagaaaggccgtagcccacatcaac
tccgtgtggaaagaccttctggaagacagtgtaacaccaatagacactaccatcatggcc
aagaacgaggttttctgcgttcagcctgagaaggggggtcgtaagccagctcgtctcatc
gtgttccccgacctgggcgtgcgcgtgtgcgagaagatggccctgtacgacgtggttagc
aagctccccctggccgtgatgggaagctcctacggattccaatactcaccaggacagcgg
gttgaattcctcgtgcaagcgtggaagtccaagaagaccccgatggggttctcgtatgat
acccgctgttttgactccacagtcactgagagcgacatccgtacggaggaggcaatttac
caatgttgtgacctggacccccaagcccgcgtggccatcaagtccctcactgagaggctt
tatgttgggggccctcttaccaattcaaggggggaaaactgcggctaccgcaggtgccgc
gcgagcggcgtactgacaactagctgtggtaacaccctcacttgctacatcaaggcccgg
gcagcctgtcgagccgcagggctccaggactgcaccatgctcgtgtgtggcgacgactta
gtcgttatctgtgaaagtgcgggggtccaggaggacgcggcgagcctgagagccttcacg
gaggctatgaccaggtactccgccccccccggggaccccccacaaccagaatacgacttg
gagcttataacatcatgctcctccaacgtgtcagtcgcccacgacggcgctggaaagagg
gtctactaccttacccgtgaccctacaacccccctcgcgagagccgcgtgggagacagca
agacacactccagtcaattcctggctaggcaacataatcatgtttgcccccacactgtgg
gcgaggatgatactgatgacccatttctttagcgtcctcatagccagggatcagcttgaa
caggctcttaactgtgagatctacggagcctgctactccatagaaccactggatctacct
ccaatcattcaaagactccatggcctcagcgcattttcactccacagttactctccaggt
gaaatcaatagggtggccgcatgcctcagaaaacttggggtcccgcccttgcgagcttgg
agacaccgggcccggagcgtccgcgctaggcttctgtccagaggaggcagggctgccata
tgtggcaagtacctcttcaactgggcagtaagaacaaagctcaaactcactccaatagcg
gccgctggccggctggacttgtccggttggttcacggctggctacagcgggggagacatt
tatcacagcgtgtctcatgcccggccccgctggttctggttttgcctactcctgctcgct
gcaggggtaggcatctacctcctccccaaccgatga
DBGET
integrated database retrieval system
