Viruses: 956107
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Entry
956107 CDS
T40000
Symbol
pol, Siv2gp2
Name
(RefSeq) Simian immunodeficiency virus SIV-mnd 2; pol protein
Virus
159122
Simian immunodeficiency virus SIV-mnd 2
Taxonomy
SSDB
Ortholog
Paralog
GFIT
Vog
Vog cluster
Motif
Pfam:
RVT_connect
RVT_1
RNase_H
RVT_thumb
RVP
IN_DBD_C
rve
Integrase_Zn
gag-asp_proteas
Asp_protease_2
Motif
Other DBs
NCBI-GeneID:
956107
NCBI-ProteinID:
NP_758887
RS:
NC_004455
UniProt:
Q8Q7J4
LinkDB
All DBs
Position
NC_004455:<2050..5082
Genome browser
AA seq
1010 aa
AA seq
DB search
FFREYPLGQWQTQELPGDAIDPNGPSNARDGRPSRENAVRLHEERATAESGKQTGKEREG
SIRGSLQLPQFSLWNRPTTVVEIEGQKVEALLDTGADDTVIKDLDLKGNWKPQIIGGIGG
SINVKQFFNCKVTIAGKTTHASVLVGPTPVNIVGRNVLKKLGCTLNFPVSKVETVKVTLK
PGTDGPKIKQWPLSKEKILALQEICSQMEKEGQISKIGPENPYNTPVFCIKKKDGTSWRK
LVDFRQLNKVTQDFFEVQLGIPHPGGLKQCEQITVLDIGDAYFSCPLDEDFRKYTAFTIP
SVNNQGPGIRYQYNVLPQGWKGSPAIFQATADKILQPFRERHPDVVIYQYMDDLFVGSDR
VAPEHSRMIQELRDHLLFWGLETPDKKFQKEPPFEWMGYILHPKKWTVQKVQLPEKEEWT
VNDIQKLVGKLNWASQIYSGIKTKELCRLIRGAKPLDEKVEWTREAELEYEENKLIVQEE
VHGVYYQPEKPLMAKVQKLTQGQWSYQIEQEDNKPLKVGKYARTKNAHTNELRVLAGLVQ
KIAKEALVIWGKLPKFYLPIEREVWDQWWPEYWQATWIPEWEFVSTPHLIGLWYNLLREP
VPGEDVYYVDGAANRNSKEGKAGYVTARNKSRVIALENTTNQKAELEAIKMALQDSGPKV
NIVTDSQYAMGILSAAPDQSDNPIVREIIELMIHKEAVYLAWVPAHKGIGGNEQVDKLVS
RGVRQVLFLEGIDKAQEEHDKYHNNWRALAQDFCIPNIVAKEIVAQCPKCQTKGEPIHGQ
VDTSPGTWQMDCTHMEGKVIIAAVHVASRYLEAEVIPTETGKETAHFLLKLAGRWPVKHL
HTDNGPNFTSEKVATVCWWAQIEHTTGIPYNPQSQGVIEAKNHHLKQIIGQVRDQAEKLE
TAVQMAVLIHNFKRKGGIGEYSPGERIVDIIATDLLTTKLQHNIQKIQNFRVYYREGRDQ
QWKGPAELIWKGEGAVVIKEGTDLKVVPRRKAKIIRDYGKTVDSDPNVEA
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
ttttttagggaataccccctggggcagtggcaaacccaggaacttcccggcgatgccatt
gaccccaacggcccctccaatgccagggatggaagacccagcagagagaatgctgttaga
ttacatgaagaaagggcaacagcagaaagcggaaagcaaacaggaaaagaaagagagggg
tccatacgaggcagcttacaactccctcagttctctctttggaacagaccaactacagta
gtagagatagaagggcaaaaagtggaggccttactggacacaggagctgatgatacagta
atcaaagatctagatttaaaaggtaattggaaaccacagattattggaggaattggagga
tcaatcaatgtaaaacagtttttcaattgtaaagtaacaatagcaggcaaaactacacac
gcttcagtcctagtgggccccacacctgtaaatattgtaggtagaaatgtgctgaagaaa
ttaggatgtacactaaattttccagttagtaaagtagaaacagtaaaggtaacactaaaa
ccaggaactgacggacctaaaataaaacaatggccattgtctaaggaaaagattttagcc
ttacaagaaatatgtagtcaaatggagaaggaaggccagatctctaagataggtccagaa
aatccttacaacacaccggtgttttgcatcaaaaagaaagatggaaccagctggagaaaa
ttggtagattttagacagttaaacaaagtaactcaggacttctttgaggtgcagttggga
atcccacaccctggaggtctcaaacaatgtgagcaaattacagtactggacataggggat
gcctatttctcatgtcctttggatgaggactttagaaagtacactgcattcaccattcca
tcggtgaataatcagggcccaggaatcaggtaccagtataatgtcctaccacagggatgg
aagggctccccagccattttccaggcaacagcagataaaatcttacagcccttcagagag
agacatccagatgtagtgatctatcaatatatggatgatctctttgttgggagtgataga
gttgccccagaacacagcagaatgattcaagagttaagagaccacctcttgttttggggg
ctcgagaccccagacaagaagtttcaaaaggaaccaccctttgagtggatgggatacata
ctgcaccctaagaaatggacagtgcagaaagtacagcttccagagaaagaagaatggaca
gtaaatgacatccaaaagttggtagggaaacttaattgggcaagtcagatttattccgga
attaaaacaaaagagctctgtagactaattagaggggcaaaacccctagatgaaaaagta
gaatggactagagaagcagaattagaatatgaagaaaacaaactcatagtgcaggaggaa
gtgcatggagtatactatcaaccagagaagcctttaatggcaaaggttcaaaaattgaca
caagggcaatggagttaccaaatagagcaggaggataataagccgctgaaggtagggaaa
tatgccagaacaaagaatgctcatacaaatgagcttagagtgcttgcaggactagtacag
aagattgcaaaagaagctttagtgatctggggaaaactccctaagttttatctgccaata
gaaagagaagtctgggaccagtggtggccagaatattggcaagccacatggattcccgaa
tgggaatttgtatccactccacaccttatcgggttgtggtataacctgttgagagaacct
gtgccaggagaagatgtgtattatgtggatggagcagctaacagaaactccaaagaaggg
aaagcaggatatgtaacagctagaaataaatccagagtaatagccctagagaataccaca
aaccaaaaagcagaattggaggcaataaaaatggcattacaagactcaggaccaaaagta
aatatagtgacagattcacagtatgctatgggtatcctatcggcagcacccgaccaatca
gacaaccccatagtaagagaaattatagaactcatgatccacaaggaagcagtataccta
gcttgggtaccagcacacaaaggcataggagggaatgagcaagtagataaactagtgagc
agaggagtaaggcaagtactgtttttagaaggcatagataaagcacaagaagagcatgat
aaatatcacaataattggagggcattagcacaagacttctgtataccaaacatagtggca
aaagaaatagtagcccagtgtccaaagtgtcaaacaaaaggagagccaatacatggccag
gtagatacatccccaggaacctggcaaatggactgcacacatatggaaggaaaagtaatc
atagcagcagtccatgtagcaagtaggtatctagaagcagaagtaatacccacagaaaca
ggaaaagaaacagcacacttcctgttaaaattagcaggtagatggccagtaaaacatcta
cacacagataatggccctaatttcaccagtgaaaaagtagccacagtctgttggtgggct
caaatagagcacactacaggaattccctacaatcctcagagtcaaggagtaatagaggca
aaaaaccatcatctcaaacaaatcatagggcaagttagagaccaagcagagaaactagaa
acagcagttcaaatggcagtattaattcacaattttaaaagaaaaggggggataggggaa
tacagtccaggagaaagaatagtagacattatagcaacagacctcctaacaactaaatta
caacacaatattcaaaaaattcaaaattttcgggtttattacagagaaggaagggaccaa
cagtggaaaggaccagcagaactcatttggaaaggagaaggagcggtggtaatcaaagag
gggacagacttgaaggtagtaccaaggagaaaagcaaaaatcatcagagattatggaaaa
acagtggatagtgatcccaacgtggaagcttga
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