Viruses: 956309
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Entry
956309 CDS
T40000
Symbol
CHIKVgp1
Name
(RefSeq) Chikungunya virus; nonstructural polyprotein
KO
K25300
Alphavirus polyprotein P1234
Virus
37124
Chikungunya virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_2
Peptidase_C9
nsP3_ZBD
ToMV_Hel_N
Vmethyltransf
Viral_helicase1
Macro
AAA_30
RdRP_1
RdRP_4
AAA_11
AAA_19
AAA_18
MeaB
AAA_33
Motif
Other DBs
NCBI-GeneID:
956309
NCBI-ProteinID:
NP_690588
RS:
NC_004162
UniProt:
Q8JUX6
A0A068FNV2
Structure
PDB
PDBj
LinkDB
All DBs
Position
NC_004162:77..7501
Genome browser
AA seq
2474 aa
AA seq
DB search
MDPVYVDIDADSAFLKALQRAYPMFEVEPRQVTPNDHANARAFSHLAIKLIEQEIDPDST
ILDIGSAPARRMMSDRKYHCVCPMRSAEDPERLANYARKLASAAGKVLDRNISGKIGDLQ
AVMAVPDTETPTFCLHTDVSCRQRADVAIYQDVYAVHAPTSLYHQAIKGVRLAYWVGFDT
TPFMYNAMAGAYPSYSTNWADEQVLKAKNIGLCSTDLTEGRRGKLSIMRGKKLEPCDRVL
FSVGSTLYPESRKLLKSWHLPSVFHLKGKLSFTCRCDTVVSCEGYVVKRITMSPGLYGKT
TGYAVTHHADGFLMCKTTDTVDGERVSFSVCTYVPATICDQMTGILATEVTPEDAQKLLV
GLNQRIVVNGRTQRNTNTMKNYMIPVVAQAFSKWAKECRKDMEDEKLLGVRERTLTCCCL
WAFKKQKTHTVYKRPDTQSIQKVQAEFDSFVVPSLWSSGLSIPLRTRIKWLLSKVPKTDL
TPYSGDAQEARDAEKEAEEEREAELTLEALPPLQAAQEDVQVEIDVEQLEDRAGAGIIET
PRGAIKVTAQPTDHVVGEYLVLSPQTVLRSQKLSLIHALAEQVKTCTHSGRAGRYAVEAY
DGRVLVPSGYAISPEDFQSLSESATMVYNEREFVNRKLHHIAMHGPALNTDEESYELVRA
ERTEHEYVYDVDQRRCCKKEEAAGLVLVGDLTNPPYHEFAYEGLKIRPACPYKIAVIGVF
GVPGSGKSAIIKNLVTRQDLVTSGKKENCQEITTDVMRQRGLEISARTVDSLLLNGCNRP
VDVLYVDEAFACHSGTLLALIALVRPRQKVVLCGDPKQCGFFNMMQMKVNYNHNICTQVY
HKSISRRCTLPVTAIVSSLHYEGKMRTTNEYNKPIVVDTTGSTKPDPGDLVLTCFRGWVK
QLQIDYRGHEVMTAAASQGLTRKGVYAVRQKVNENPLYASTSEHVNVLLTRTEGKLVWKT
LSGDPWIKTLQNPPKGNFKATIKEWEVEHASIMAGICSHQMTFDTFQNKANVCWAKSLVP
ILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYA
DNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
RRLPHSLVAEHRPVKGERMEWLVNKINGHHVLLVSGCSLALPTKRVTWVAPLGVRGADYT
YNLELGLPATLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIR
AYGYADRTSERVICVLGRKFRSSRALKPPCVTSNTEMFFLFSNFDNGRRNFTTHVMNNQL
NAAFVGQATRAGCAPSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKN
SATPVGTAKTVMCGTYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIP
LLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQMRTQVELLDE
HISIDCDVVRVHPDSSLAGRKGYSTTEGALYSYLEGTRFHQTAVDMAEIYTMWPKQTEAN
EQVCLYALGESIESIRQKCPVDDADASSPPKTVPCLCRYAMTPERVTRLRMNHVTSIIVC
SSFPLPKYKIEGVQKVKCSKVMLFDHNVPSRVSPREYRPSQESVQEASTTTSLTHSQFDL
SVDGKILPVPSDLDADAPALEPALDDGAIHTLPSATGNLAAVSDWVMSTVPVAPPRRRRG
RNLTVTCDEREGNITPMASVRFFRAELCPVVQETAETRDTAMSLQAPPSTATELSHPPIS
FGAPSETFPITFGDFNEGEIESLSSELLTFGDFLPGEVDDLTDSDWSTCSDTDDELRLDR
AGGYIFSSDTGPGHLQQKSVRQSVLPVNTLEEVHEEKCYPPKLDEAKEQLLLKKLQESAS
MANRSRYQSRKVENMKATIIQRLKRGCRLYLMSETPKVPTYRTTYPAPVYSPPINVRLSN
PESAVAACNEFLARNYPTVSSYQITDEYDAYLDMVDGSESCLDRATFNPSKLRSYPKQHA
YHAPSIRSAVPSPFQNTLQNVLAAATKRNCNVTQMRELPTLDSAVFNVECFKKFACNQEY
WEEFAASPIRITTENLTTYVTKLKGPKAAALFAKTHNLLPLQEVPMDRFTVDMKRDVKVT
PGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLLPNVHTLFDMSAEDFDAII
AAHFKPGDTVLETDIASFDKSQDDSLALTALMLLEDLGVDHSLLDLIEAAFGEISSCHLP
TGTRFKFGAMMKSGMFLTLFVNTLLNITIASRVLEDRLTKSACAAFIGDDNIIHGVVSDE
LMAARCATWMNMEVKIIDAVVSQKAPYFCGGFILHDIVTGTACRVADPLKRLFKLGKPLA
AGDEQDEDRRRALADEVVRWQRTGLIDELEKAVYSRYEVQGISVVVMSMATFASSRSNFE
KLRGPVVTLYGGPK
NT seq
7425 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgtgtacgtggacatagacgctgacagcgcctttttgaaggccctgcaacgt
gcgtaccccatgtttgaggtggaacctaggcaggtcacaccgaatgaccatgctaatgct
agagcgttctcgcatctagctataaaactaatagagcaggaaattgatcccgactcaacc
atcctggatattggtagtgcgccagcaaggaggatgatgtcggacaggaagtaccactgc
gtttgcccgatgcgcagtgcagaagatcccgagagactcgccaattatgcgagaaagcta
gcatctgccgcaggaaaagtcctggacagaaacatctctggaaagatcggggacttacaa
gcagtaatggccgtgccagacacggagacgccaacattctgcttacacacagatgtatca
tgtagacagagagcagacgtcgcgatataccaagacgtctatgctgtacacgcacccacg
tcgctataccaccaggcgattaaaggggtccgattggcgtactgggtagggtttgacaca
accccgttcatgtacaatgccatggcgggtgcctacccctcatactcgacaaattgggca
gatgagcaggtactgaaggctaagaacataggattatgttcaacagacctgacggaaggt
agacgaggcaaattgtctattatgagaggaaaaaagctagaaccgtgcgaccgtgtgctg
ttctcagtagggtcaacgctctacccggaaagccgtaagctacttaagagctggcaccta
ccatcggtgttccatttaaagggcaagctcagcttcacatgccgctgtgatacagtggtt
tcgtgcgaaggctacgtcgttaagagaataacgatgagcccaggcctttacggaaaaacc
acagggtatgcggtaacccaccacgcagacggattcctgatgtgcaagaccaccgacacg
gttgacggcgaaagagtgtcattctcggtgtgcacgtacgtgccggcgaccatttgtgat
caaatgaccggcatccttgctacagaagtcacgccggaggatgcacagaagctgttggtg
gggctgaaccagagaatagtggttaacggcagaacgcaacggaatacgaacaccatgaaa
aactatatgattcccgtggtcgcccaagccttcagtaagtgggcaaaggagtgccggaaa
gacatggaagatgaaaaactcctgggggtcagagaaagaacactgacctgctgctgtcta
tgggcatttaagaagcagaaaacacacacggtctacaagaggcctgatacccagtcaatt
cagaaggttcaggccgagtttgacagctttgtggtaccgagcctgtggtcgtccgggttg
tcaatcccgttgaggactagaatcaaatggttgttaagcaaggtgccaaaaaccgacctg
accccatacagcggggacgcccaagaagcccgggacgcagaaaaagaagcagaggaagaa
cgagaagcagaactgactcttgaagccctaccaccccttcaggcagcacaggaagatgtt
caggtcgaaatcgacgtggaacagcttgaggacagagcgggtgcaggaataatagagact
ccgagaggagctatcaaagttactgcccaaccaacagaccacgtcgtgggagagtacttg
gttctttccccgcagaccgtactacgtagccaaaagcttagcctgattcacgctttggcg
gagcaagtgaagacgtgcacgcacagcggacgagcagggaggtatgcggtcgaagcgtac
gacggcagagtcctagtgccctcaggctacgcaatctcgcctgaagacttccagagccta
agcgaaagcgcaacgatggtgtacaacgaaagagagttcgtaaacagaaagctacaccat
attgcgatgcatggaccagccctgaacaccgacgaagagtcgtatgagctggtgagggca
gagaggacagaacacgagtacgtctacgacgtggaccagagaagatgctgtaagaaggaa
gaagctgcaggactggtactggtgggcgacttgactaatccgccctaccacgaattcgca
tatgaagggctaaaaatccgccctgcctgcccatacaaaattgcagtcataggagtcttc
ggagtaccaggatctggcaagtcagctattatcaagaacctagttaccaggcaagacctg
gtgactagcggaaagaaagaaaactgccaagaaatcaccaccgacgtgatgagacagaga
ggtctagagatatctgcacgtacggttgactcgctgctcttgaatggatgtaacagacca
gtcgacgtgttgtacgtagacgaggcgtttgcgtgccactctggaacgttacttgcattg
atcgccttggtgagaccaagacagaaagttgtactttgtggtgacccgaagcagtgcggc
ttcttcaatatgatgcagatgaaagtcaactataatcacaacatctgcacccaagtgtac
cacaaaagtatctccaggcggtgtacactgcctgtgactgccattgtgtcatcgttgcat
tacgaaggcaaaatgcgcactacgaatgagtacaacaagccgattgtagtggacactaca
ggctcaacaaaacctgaccctggagatctcgtgttaacgtgcttcagaggatgggttaaa
caactgcaaattgactatcgtggacacgaggtcatgacagcagccgcatcccaagggtta
accagaaaaggagtttacgcagttaggcaaaaagttaacgaaaacccgctttatgcatca
acgtcagagcacgtcaacgtactcctaacgcgtacggaaggtaaactggtatggaagaca
ctctccggtgacccgtggataaagacgctgcagaacccaccgaaaggaaacttcaaagca
actattaaggagtgggaggtggagcatgcatcaataatggcgggcatctgcagtcaccaa
atgacctttgatacattccaaaacaaagccaacgtttgttgggctaagagtttggtccct
atcctcgaaacagcggggataaaactaaacgacaggcagtggtcccagataattcaagcc
ttcaaagaagacaaagcatattcacccgaagtagccctgaatgaaatatgcacgcgcatg
tatggggtggatctagacagcgggctattttctaaaccgttggtgtctgtgtattacgcg
gataaccactgggataataggcctggagggaagatgttcggattcaaccccgaggcagca
tccattctagaaagaaagtatccatttacaaaagggaagtggaacatcaacaagcagatc
tgcgtgactaccaggaggatagaagacttcaaccctaccaccaacattataccggccaac
aggagactaccacactcattagtggccgaacaccgcccagtaaaaggggaaagaatggaa
tggctggttaacaagataaacggccaccacgtgctcctggtcagtggctgtagccttgca
ctgcctactaagagagtcacttgggtagcgccactaggtgtccgcggagcggactataca
tacaacctagagttgggtctgccagcaacgcttggtaggtatgacctagtggtcataaac
atccacacaccttttcgcatacaccattatcaacagtgcgtagaccacgcaatgaaactg
caaatgctcgggggtgactcattgagactgctcaaaccgggtggctctctattgatcaga
gcatatggttacgcagatagaaccagtgaacgagtcatctgcgtattgggacgcaagttt
agatcatctagagcgttgaaaccaccatgtgtcaccagcaacactgagatgttttttcta
ttcagcaactttgacaatggcagaaggaatttcacaactcatgtcatgaacaatcaactg
aatgcagcctttgtaggacaggccacccgagcaggatgtgcaccgtcgtaccgggtaaaa
cgcatggatatcgcgaagaacgatgaagagtgcgtagtcaacgccgccaaccctcgcggg
ttaccaggtgacggtgtttgcaaggcagtatacaaaaaatggccggagtcctttaagaac
agtgcaacaccagtgggaaccgcaaaaacagtcatgtgcggtacgtatccagtaatccac
gccgttggaccaaacttctctaattattcggagtctgaaggggaccgagaattggcggct
gcctatcgagaagtcgcaaaggaggtaactagactgggagtaaatagtgtagctatacct
ctcctctccacaggtgtatactcaggagggaaagacaggctgacccagtcactgaaccac
ctctttacagccatggactcgacggatgcagacgtggtcatctactgccgcgacaaagaa
tgggagaagaaaatatctgaggccatacagatgcggacccaagtggagctgctggatgag
cacatctccatagactgcgatgttgttcgcgtgcaccctgacagcagcttggcaggcaga
aaaggatacagcaccacggaaggcgcactgtactcatatctagaagggacccgttttcac
caaacggcagtggatatggcagagatatatactatgtggccaaagcaaacagaggccaac
gagcaagtttgcctatatgccctgggggaaagtattgaatcgatcaggcagaaatgcccg
gtggatgatgcagatgcatcatctcccccgaaaactgtcccgtgcctctgccgttacgcc
atgacaccagaacgcgttacccgacttcgcatgaaccatgtcacaagcataattgtgtgt
tcttcgtttccccttccaaagtacaaaatagaaggagtgcaaaaagtcaaatgctccaag
gtaatgctatttgaccacaacgtgccatcgcgcgtaagtccaagggaatacagaccttcc
caggagtctgtacaggaagcgagtacgaccacgtcactgacgcatagccaattcgatcta
agcgttgacggcaagatactgcccgtcccgtcagacctggatgctgacgccccagcccta
gaaccagcccttgacgacggggcgatacacacgttgccatctgcaaccggaaaccttgcg
gccgtgtctgactgggtaatgagcaccgtacctgtcgcgccgcccagaagaaggcgaggg
agaaacctgactgtgacatgcgacgagagagaagggaatataacacccatggctagcgtc
cgattctttagggcagagctgtgtccagtcgtacaagaaacagcggagacgcgtgacaca
gctatgtctcttcaggcaccgccgagtaccgccacggaactgagtcacccgccgatctcc
ttcggtgcaccaagcgagacgttccccatcacatttggggacttcaacgaaggagaaatc
gaaagcttgtcttctgagctactaactttcggagacttcctacccggagaagtggatgat
ttgacagatagcgactggtccacgtgctcagacacggacgacgagttacgactagacagg
gcaggtgggtatatattctcgtcggacactggtccaggtcatttacaacagaagtcagta
cgccagtcagtgctgccggtgaacaccctggaggaagtccacgaggagaagtgttaccca
cctaagctggatgaagcaaaggagcaactactacttaagaaactccaggagagtgcatcc
atggccaacagaagcaggtatcagtcgcgcaaagtagaaaacatgaaagcaacaatcatc
cagagactaaagagaggctgtagattatacttaatgtcagagaccccaaaagtccctacc
taccggaccacatatccggcgcctgtgtactcgcctccgattaacgtccgactgtccaac
cccgagtccgcagtggcagcatgcaatgagttcttggctagaaactatccaactgtttca
tcataccaaatcaccgacgagtatgatgcatatctagacatggtggacgggtcggagagt
tgtctggaccgagcgacattcaatccgtcaaaacttaggagctacccaaaacagcacgct
taccacgcgccctccatcagaagcgctgtaccgtccccattccagaacacactacagaat
gtactggcagcagccacgaaaagaaactgcaacgtcacacagatgagggaattacccact
ttggactcagcagtattcaacgtggagtgtttcaaaaaattcgcatgcaaccaagaatac
tgggaagaatttgctgccagccctatcaggataacaactgagaatttaacaacctatgtt
actaaactaaaggggccaaaagcagcagcgctatttgcaaaaacccataatctgctgcca
ctgcaggaagtgccaatggataggttcacagtagacatgaaaagggatgtgaaggtgact
cctggtacaaagcacacagaggaaagacctaaggtacaggttatacaggcggctgaaccc
ttggcaacagcatacctatgtgggattcacagagagctggttaggaggctgaacgccgtc
ctcctacccaatgtacatacactatttgacatgtctgccgaggatttcgatgccatcata
gccgcacactttaagccaggagacactgttttagaaacggacatagcctcctttgataag
agccaagatgattcacttgcgcttactgctttaatgctgttagaggatttaggggtggat
cactccctgttggacttgatagaggctgctttcggagagatttccagctgtcatctaccg
acaggtacgcgcttcaagttcggcgccatgatgaaatctggtatgttcctaactctgttc
gtcaacacactgctaaatatcaccatcgccagccgagtgctggaagatcgtctgacaaaa
tccgcgtgcgcagccttcatcggcgacgacaacataatacatggagtcgtctccgatgaa
ttgatggcagccagatgcgccacttggatgaacatggaagtgaagatcatagatgcagtt
gtatcccagaaagccccttacttttgtggagggtttatactgcacgatatcgtgacagga
acagcttgcagagtggcagacccgctaaaaaggctatttaaactgggcaaaccgctagcg
gcaggtgacgaacaagatgaggatagaagacgagcgctggctgacgaagtggtcagatgg
caacgaacagggctaattgatgagttggagaaagcggtatactctaggtatgaagtgcag
ggtatatcagttgtggtaatgtccatggccacctttgcaagctccagatccaacttcgag
aagctcagaggacccgtcgtaactttgtacggcggtcctaaatag
DBGET
integrated database retrieval system
