Viruses: 956340
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Entry
956340 CDS
T40000
Symbol
ORF1_readthrough, ScmvsRNA1gp1
Name
(RefSeq) Soil-borne cereal mosaic virus; replication protein
Virus
100887
Soil-borne cereal mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_2
Vmethyltransf_C
Vmethyltransf
Viral_helicase1
AAA_19
AAA_30
Motif
Other DBs
NCBI-GeneID:
956340
NCBI-ProteinID:
NP_059450
RS:
NC_002351
UniProt:
Q9IWB1
LinkDB
All DBs
Position
NC_002351:108..5558
Genome browser
AA seq
1816 aa
AA seq
DB search
MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETYLDAVERQKIKKKIDV
RRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDLLLSRIPKRAWVYDIGG
NWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEKETIPVEVGEKLKRIQED
ENSTYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMAIHSIYDIDLMDLANALEE
KRVRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKYGFHNDTNPGYKHKLSQLMK
YLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMNGVVRDESFKCIPMEDNGNVV
FPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQLTAENVNTYLTSTNNTIIIGG
SSKKNVNKVDSLLIAQITTTLVVWTELMHARHKRVMELLRLQMKEDVDFKSLAHAAFLKV
FGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVEITDRVKLWKTYAPNQGFVLDMED
LDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYGTSERACDVVRTDNRRKTDFGDLLE
GEVATNFIDSWCEKDDHFNFSYDDAESKYVWCAKLLRMVWDTLIPPMEFAPVYVDDKDAS
IRIASRIEKREKNDAEVTTDGTSGFVGTERKEFDAAVDLLTVAGNKTTDELKAQRTEVVA
AANAVVAQNKLYTESEVSNAVKLWADVDDEFLEEEETTVPVADITDHASVIEENFENLQQ
GSSSNSTPIVVARENLFVRNDMGPSAVTSDDCSTEGELREKSWASLAEEESDSSYYLNTA
IISGKVQKSALPKAPDFSKYATFQAKAKQEALWYLQCKIVSDRTTLRSIIDDHLRGMFHN
DTCELPKDSAFLDHTTDNGGAWMYGKPSRFGHSYGVGFSLNSKREITKCELVKLMWNYDG
RGQISQKPVNTKAFSYLLLSELTFMMNELLIFCNLQKVIKKKERTKHALITLRDGVPGCG
KSTWIVENANPMKDMVLSMCKEATEDLKEKFAKRLRCTESALRRVRTVDSFLMHDYDKFR
AATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTE
YVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDT
QYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQP
YEIVATTRHRRSLVYYTAIEDRLFSDINDMRDVMEDKLMKNLSSELAKXRFGSKYESILI
CDREVRVPDVGNSVILQDFYDRVLPANSTMDSHFDGYEVATTDITIEVENCKVHPHKNVK
VWQDKRGLIPVLRTAMPPKRQNGMVEALLALKKRNMAAPKLQEAVNEFEVIDRTISRARS
ISLNEDMIDESLVSTRESNMRWWEKQSHTARQQLKSEYRVLHELDLCKYSHNIKGDEKPK
NDLTPQREYGALQTVVYPDKIVNALFGPVMKEINERIGMALKPHVVYNSRMNAEELNRTV
EFLDPEDEYDAFEIDFSKFDKSKTSLHIRAVIELYKLFGLDDMLSLLWEKSQCQTTVIDR
TNGITAYLLYQQKSGNCDTYGSNTWSAALALLESMPLEKAKYMIFGGDDSLILFPKQLCI
EDPCRRLASLWNFDCKLFNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKL
LSEIFVSMGDNYCSYRDYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFN
YSGEFEVCKVGRNFEW
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atgccgattgatagcagttcaatattgggtattatcagtgaggaagatgttgtgcgggct
gcaatcagcactagtgccacgaaattcggttcgcaattacatggtacagtgtgtgatcat
gtgaaggagacatatcttgacgcggttgaaagacaaaaaataaaaaagaaaattgacgtt
cgtagggacctatcacaggagcagctgcagttgctgaacgatttgtatcccgaacgacac
atcgtttctagcaattgcgaacgcggtacacacagctttgcagcggcttctaggaagatc
gagacggacttgttgttaagtcgaataccaaaaagggcgtgggtttacgatattggtggc
aattgggcgacacatgtgaagcggaacgatggtaggaaagttcactgttgctgtccgacg
ttggacattcgtgacgctggtcggaagacgactcgatgggcttctattgagaaataccaa
gacgaaaaggaaacgattcctgttgaagtcggagagaaactcaagaggatacaggaggac
gagaatagcacctatgctaatcttaaagctggcagatgccaaccagaggatctcaatggg
aagtggtattgtggtaataagttcgaggagtgcgtgtttacggctgaaagagcttatgcg
atggctatccacagtatttatgacattgatctgatggacttggccaacgctttagaagaa
aaacgtgtaaggataatgagtggcacgtttctgttttcagtggatctactgctggggaaa
aaacaggggagacttccaacgatggacggttttttcgaggtggagggtgattacgtgaag
tatggttttcataatgacaccaatccgggttacaagcacaaactgagtcagttgatgaag
tatcttacgaaaacctttgtgactgctaaagggggttcgatatattatcttgaactgaca
gagttgcgaggtgacgtgatgttctttactatgacggacgcgacggaggctaggatgaat
ggtgtggttcgggatgagtctttcaagtgcatacctatggaagacaacggaaatgtggta
tttcctttgtttgaagtagacaagcgtagcgatacgctttgcttctcggagattttgcta
ccccgtgattttgtgcagagggcggttgagtataccggtcgtttgaaagggaatcaactc
actgcggaaaacgtaaacacatatctgacgtcgaccaataataccattattattggcggt
tcgtcaaagaaaaatgtgaacaaggttgattcactgctgatagcacagataactacgacg
ttggtagtttggactgaactgatgcatgcgaggcacaagcgagttatggagttgctgagg
ttgcagatgaaggaagacgtggattttaagtctttggcacatgctgcatttctgaaagtg
ttcggtaaggtgagtttctatcaaaaggcgttgaggagtttcgcgaattggatttcatat
tgtcatggctctgacgctattcattttcgtcctgtgccactgtacgttgaaataaccgac
agagtgaaattgtggaaaacttatgcaccgaatcagggattcgtattggacatggaagat
ttggacgagaagataaaactgcatgagataaccgagagggaaaagtacgatgttagtaga
cacattgtgtctactaaacttggcgagttggctactggagattatggtacatccgaaaga
gcttgtgatgtggtgcgcactgataacaggagaaaaactgattttggtgatctgttggaa
ggagaggtggccacaaacttcattgactcttggtgcgagaaagatgatcattttaacttt
tcttatgatgatgctgaatcaaagtacgtgtggtgtgcaaagttgctgagaatggtgtgg
gatactttgatccctcccatggaatttgcgcccgtttatgtggatgacaaggacgcgtcg
attcgcattgcatcgagaattgagaagagagagaaaaatgatgctgaggttactactgat
ggtacctctggatttgttggcactgagaggaaagagtttgacgctgctgtggatcttctg
acggttgctgggaacaaaaccacggatgaactgaaagctcagagaacagaggtcgttgct
gcggctaacgcggtagtcgcgcagaataagctgtacacggaatctgaggtgtctaatgca
gtgaagctttgggctgatgttgatgacgaatttctggaagaagaagagacaactgttccc
gtggcggacattactgatcacgcttctgtaattgaagagaattttgagaatttgcaacag
ggtagctcttctaactctacgccaatcgttgtggcaagagagaatctgtttgtgcgtaac
gacatgggtccctcggcagtgactagcgatgattgttcgactgagggtgaacttagggaa
aaatcttgggcatctttggcagaggaagagagcgattcgtcttactacttgaatactgcg
attatttcgggcaaagtacagaaaagtgcactaccaaaagctccagatttttcgaagtat
gcgacgtttcaagcgaaggcgaaacaggaggctttgtggtacttgcaatgcaagatcgtt
tctgatcgtacgacactgcggagcatcatagacgatcatctgagaggtatgtttcacaat
gatacttgtgagttgcctaaggattcagcttttttggaccacacgactgataacggtggt
gcttggatgtatgggaaaccatccagatttgggcacagttacggtgtgggtttttcattg
aattcgaagcgggagattaccaagtgtgagttagtgaaactgatgtggaactatgatggc
agggggcagataagtcaaaaacctgtgaacacgaaagctttttcgtatctgttgctgagt
gaattgacatttatgatgaacgaattgctcattttctgcaatttgcagaaggttattaag
aagaaggaacggacaaaacacgcccttattactttacgggacggtgttccaggttgcggc
aaatctacttggattgttgagaacgcaaaccccatgaaagatatggtgttgtccatgtgc
aaggaagcgactgaagatttgaaagaaaaatttgcgaagagattaagatgtacggaatcg
gcgttgaggagggtgcgaactgtggattcttttctgatgcatgattatgataaattcagg
gcagcgacggttcacttcgacgaagcgctgatggcgcatgcaggaatggtttatttctgt
gcggatattttgggtgcaaaacgagtgctgtgccaaggagactcacaacagattcctttt
ataaatcgtgttgaatctatcactctgaaatacgcaaaattgcagattgatgatacggag
tatgtgagattgacttatcgatcgcctattgatgttgcacactatctcacgaagaagtct
tattatagtggaggtagggtgcttacgaagaacacaactctgagatctatgaacactgtt
ggccctcgcgatgcgaagcctatgacatctgtgcattgtgttccctaccatcgtgatact
caatatctaacgttcactcagtcggagaaagctgacctttataaggcactgcgaaacagg
gggccggtaaatgtgaataccgtgcacgagacacagggtaagacgtttgacgatgtaatc
gtggtgaggctgaagacgacggaaaatgagatttatcccgggggaaggaaggctcaacca
tatgagattgtggcgactacgaggcatagacgttcgttggtgtactatactgcgattgag
gacaggctgttttctgatatcaatgacatgcgggatgtgatggaagacaagttgatgaag
aaccttagctctgagttggcgaaatgacggtttgggtcgaagtatgaatccatattgatt
tgcgatagggaagtgagggttcccgacgtgggaaattctgttattttgcaggatttttac
gatagggttctacctgcaaattctacaatggattcacacttcgacgggtatgaagtggca
acgacagacattactatagaggttgaaaattgtaaggttcacccgcataagaatgtgaaa
gtttggcaagataaacggggtctgattcccgttttgcgcactgcaatgccaccgaaaagg
cagaatggcatggtggaagcacttttggcgttgaagaaaagaaacatggctgcaccgaag
ctacaagaagctgtgaatgaattcgaggtaatagatcggactattagtcgcgctagatca
atttccttgaatgaagacatgattgacgaatcgttggtctcgacgcgtgagtcaaatatg
cgttggtgggaaaaacagtcacatacagctaggcagcaattgaaaagcgagtacagggtg
ctgcatgagttggacttatgcaaatattctcataatattaaaggggatgaaaaaccaaag
aatgatttgacacctcaacgtgaatatggcgctttgcagacagttgtttatcctgataag
attgttaatgcgctgttcggacctgttatgaaggagataaatgagcgtataggaatggct
ttgaaacctcatgtggtttacaactcaaggatgaatgccgaagagttgaatcggactgtc
gaatttctggatccggaagatgagtatgacgcattcgaaatagatttttcaaaattcgac
aaatcgaaaacatcattgcatatacgagctgtaattgagttgtataagttgtttggtttg
gatgatatgttgtccttactttgggagaaatctcaatgtcagaccactgttattgacaga
acaaacggcattactgcttatttgttgtaccagcagaaatctggtaattgtgacacttat
ggttctaacacgtggtcggccgctctggctttgttggagtctatgccattggagaaagct
aaatatatgatttttggcggggatgactctctgattttgtttcctaaacaactctgcatt
gaggatccgtgtagacgcttggcatctctgtggaacttcgattgtaagttgtttaacttc
aggcataatatgttttgtggtaagtttttgttgaagatcggaaacaagtttaaattcgct
ccagatccgatgaagttgttgacgaagttgggacgcaaggatattgcagatggtaagtta
ctctctgagatttttgtttctatgggagataattactgctcttaccgggactatcgtatt
ttggagcaacttgcggtggctgtgcaagaaaggtacaggacgaatgaggaccctaccgcg
atgttgatcactttgaagaagtatatttttgattttaagctgttggctagtttgtttaat
tatagtggtgagtttgaagtgtgtaaagtggggaggaactttgagtggtga
DBGET
integrated database retrieval system
