Viruses: 956365
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Entry
956365 CDS
T40000
Symbol
ORF1, SrCSVs1gp2
Name
(RefSeq) Sorghum chlorotic spot virus; helicase
Virus
107804
Sorghum chlorotic spot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Vmethyltransf
Viral_helicase1
Vmethyltransf_C
UvrD_C_2
UvrD_C
Phage_TAC_1
SieB
AAA_19
Chropara_Vmeth
Motif
Other DBs
NCBI-GeneID:
956365
NCBI-ProteinID:
NP_659019
RS:
NC_004014
UniProt:
Q9JGJ7
LinkDB
All DBs
Position
NC_004014:115..3948
Genome browser
AA seq
1277 aa
AA seq
DB search
MEGTGGLLGILGEADIVRAAIATRTNSQLHQTVCDHIKDHIVDSKEKQKTKKKIDVRRNL
DQEQIQLLNELYPERHIVTSSYERGTHNFAAASRIIELDILLSKFPKDKFVYDIGGNWAS
HVKRNDNRRVHCCCPILDFRDAQRKSVRWASIEKFVAEKESIPEDLGNKIKQLYSDESRI
RENVRKQDLRAEAMDGVWYCQNKFEDCVHNVANAAAIAIHSIYDIEIEDLVDALEEKQIK
QLTGTFLFSVELLMGSKRGELPTVNGFFEVEGDKVKYGFYDDPNCGYTHNLQQLKKYLTK
TYVKARGGSVYYLELNDIRGDVVFFTFTDATEAVMMGVSVDESFKCIPVNAANKVVFPLF
SLNERSKELEFSEVILPRDFVSRAVEYVDRVKDNQNTVDNIRSYLFSTNNSVVIAGASRK
TVEKVNPLLISRICTTLQVYSEVRREKEKRVMIALKDQVREDVSLNSLFAATVARVFGKV
SVWQRALRAYATWIGHVYGCDVLNFANMPLYVEIHDRIRLWSQTAQLDGFFHDMADLEEK
MRVHREIEEERKRISECIASEKLGDLYVEVDVCDNVSERNVEARVLRPMEHKKGAINLSI
VNSWCEEGSLFALDERPRKVHTPLKNLLGKMVEIIFPKCELSAVMFDEQGQRVYADSLDK
RQLKLLLDGKISPKDVTVGVQQSIQSEMVAQHDFTLDKVVREVAAEAFDIWGRELEGVSE
EKEEVAVVSKSCRSVAVQTNDDDDLPPPTATSPSPSISSIEDNYPQTPDFTTPSSPDSVV
TESSSDGEEPAVKQWGSTCSESDDAYLSVSVMMTDEVKVSRLPNAPKFESFATVQKKAKM
EYLWYLRCKMISDRSTLRGIIDDFNNGLFYSENCDTPKDSCFLDYTTSSNGTWCFSKRPQ
RLGHAYGVGFNIVAGKITTCELFKLFWDQEVLSDKPRNCGMYNYVLINDLTYLMNEMVIY
RNLQNTFMRKERRVSAKVVLKDGVPGCGKSTWILNNANLKRDVVLSMGKEATVDLREKFE
EKYAFGKKELNRVRTVDSYLMHDCGKEMTCNTLHFDEALMAHAGMVYFCADLLGARKLIC
QGDSQQIPFVNRVESITLRYANLVIDKTDKIRHTYRSPIDVACYLTMKGYYGADRITTTN
SDGRSLGVVGPRHEKPMTSVYCVPYLAGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEA
QGKTFNDVILVRLKTTENEIYPGGRKSKPYSIVGVTRHRRSLVYYTAIEDRLYYDIEDMK
RVMEDKLMKSFNGEHTK
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggagggaactggtggtttgttgggtatcctaggtgaggctgatatagttcgagccgca
atagcaaccagaacgaattcgcagttgcatcagactgtatgtgaccatattaaagatcat
atagtagatagtaaagaaaaacaaaaaacaaaaaaaaaaatagatgtgcgcaggaattta
gatcaggagcagatacaactcttaaatgaactgtaccctgagaggcacattgtcaccagc
agttacgaaagggggacgcataattttgccgccgcttctaggatcattgagttggacatt
ttgctgagcaagtttccaaaagacaagtttgtctatgatattggtggtaattgggcttct
catgtgaaacggaatgataacagaagggtgcattgttgttgtccgattttagattttcgt
gatgcacagagaaaatctgtacgttgggcgtcgattgagaaattcgtggctgaaaaagaa
agtattcctgaagatctgggtaataagattaagcaattatactctgacgagagtcggatc
agggagaacgtgaggaaacaggatttacgggctgaggctatggatggtgtgtggtattgt
caaaacaagttcgaagattgtgtacataacgtggcgaatgcggcggctattgctatccac
agcatatacgatatcgaaatagaggacttagtcgatgctttggaagagaaacagataaag
cagctgactgggactttccttttttctgtggagttgttgatgggtagtaaacgcggtgag
ctaccaaccgttaacgggttttttgaggttgagggtgacaaagtgaaatacgggttttac
gatgaccccaactgtggttatacacacaacctgcaacagttgaaaaaatatctcacaaag
acatatgttaaggcacgaggtggttctgtatattacctggaattgaacgacattagaggt
gacgttgtgttctttacgttcactgatgctacagaggctgttatgatgggcgtgagtgtt
gacgaatcattcaaatgtatcccggtgaacgcagcaaataaagtggtattcccgctattt
tccttgaacgagaggagtaaggaattggaattttctgaggttattttaccgcgcgatttc
gtgagcagagcggttgaatatgtcgacagagttaaggataatcagaatacggttgataat
atcaggagctacttgttttctaccaataatagtgttgtgatagcgggtgcttcgaggaag
acagttgagaaagtcaatccgttgttgatctcgcgtatttgtactacattgcaagtgtat
tccgaggtgcgaagagagaaagaaaaacgcgttatgattgctttgaaagatcaggtgagg
gaagacgtttctctgaactcgctgtttgctgctactgtagcgcgtgtttttggcaaggta
tcagtttggcagcgtgcgctgagggcctacgcgacatggatcgggcacgtgtacggttgt
gatgtattgaatttcgcgaacatgccgttatacgtagagattcatgatcgtattaggtta
tggtcacagactgcgcagttggatgggtttttccatgatatggctgatttggaggagaaa
atgcgcgttcatcgtgaaattgaggaagagagaaagcgtattagcgagtgcattgcttct
gagaaacttggggacctatacgttgaagttgatgtgtgcgataatgtttcggagaggaat
gttgaggctagagtactaagaccgatggaacacaaaaaaggggctatcaatttgagtatc
gtcaattcgtggtgcgaagagggaagtttatttgctttggatgagagaccgcggaaagtg
cacaccccgttgaaaaacttgttgggaaaaatggttgagatcatattcccgaaatgtgag
ttgtcagcggtaatgtttgatgagcagggacagcgtgtgtatgcggactctttagataaa
aggcaattaaaacttcttttggacggtaagatttcacctaaagatgtgactgtcggcgta
cagcagagcattcaatcagaaatggttgcgcagcatgattttacgcttgataaggttgtc
agggaagttgcagctgaagcattcgatatttggggtcgtgagttggaaggagtttcggag
gagaaagaggaagttgctgttgttagcaagagttgccgaagtgttgctgtgcagacaaat
gacgacgacgacctcccgccaccgactgctacatctccatcaccctccatcagttctata
gaggacaactatccgcaaacgccggactttactacaccgtcctcgcctgattcggttgtt
acggaaagctcttctgacggagaggaaccggccgttaagcagtggggctcgacgtgttcc
gagagcgacgatgcttatctatctgtatctgtgatgatgacggatgaggtgaaagtatcg
agattgcctaatgcaccaaaatttgaatccttcgcgacagtgcagaagaaggcgaagatg
gagtatttgtggtacttgcgttgtaagatgatctctgataggtcaaccttgcgaggtatc
atagatgatttcaataatgggttgttctactcggaaaactgtgatacgccgaaagattca
tgtttcttggactatacgacttcgagtaacggcacgtggtgtttttcgaaacggcctcag
cgccttggacacgcttacggtgttgggttcaacattgtggctggaaagatcacgacttgc
gaattattcaagttattttgggatcaggaagtgctcagcgataaaccgaggaattgtggt
atgtataattacgttcttataaacgacttgacttacctgatgaatgaaatggttatttac
aggaatttgcagaacacgttcatgcggaaggaacgtcgggtgagtgcgaaagtcgtgctt
aaggacggtgtacctggttgcggaaagtccacgtggatattgaacaacgctaatttgaaa
agagatgttgttttgtcgatgggaaaggaggccaccgtggacttgcgagaaaaatttgaa
gagaaatatgctttcgggaaaaaggagttgaatcgtgtgcgtaccgtagattcgtatctc
atgcacgattgtggcaaagagatgacctgcaacacactgcactttgatgaagctctgatg
gcgcatgctggcatggtgtatttttgtgccgatcttctgggcgcgcggaagctcatttgc
cagggtgattcccaacaaatcccgtttgtgaatcgagtcgaatcaataacgttacgctat
gcgaatttggtgatagataagacggataaaatcagacacacttaccgatctcctatagac
gttgcgtgctacttgacgatgaaaggatactatggggctgaccggattacgacgaccaat
tccgacggtagatctttgggagtggttggacccaggcacgagaagccgatgacgtctgtg
tactgcgtgccttatctagctggtgtgcagtatctaactttcacgcaggctgagaaggag
gatttgcataaagcactacgctcaaaaggacctgtttctgttagcacggtgcatgaagct
cagggcaagacgttcaacgacgtcattctggtacgactgaagaccaccgaaaacgaaatt
tatccaggcggaagaaagtccaaaccttactcgatagtgggtgtgactaggcacaggcga
tcattggtctactacacggctattgaagacaggttgtattacgacattgaagatatgaag
cgcgttatggaggacaagctgatgaaatcgtttaacggtgagcataccaaatga
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