Viruses: 956504
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Entry
956504 CDS
T40000
Symbol
RDVs3gp1
Name
(RefSeq) Rice dwarf virus; major core protein
Virus
10991
Rice dwarf virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RDV-p3
Motif
Other DBs
NCBI-GeneID:
956504
NCBI-ProteinID:
NP_620543
RS:
NC_003772
UniProt:
Q98630
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Position
NC_003772:39..3098
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AA seq
1019 aa
AA seq
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MDSTGRAYDGASEFKSVLVTEGTSHYTPVEVYNILDELKTIKITSTIAEQSVVSRTPIPL
SKIGLSDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYEPSLTM
HRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEQDVV
NAQRENRIFYQRKSAPAVPVTFGDDLEPAVRERANLYHRYSVPYHQIELALHALANDLLS
IQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLDYDLVYMSPLAL
NNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFI
AQSMLNPNISYGMLSGLTLDCFSNFIYGACLMLFQALIPPSALTARQRLDINNRFAYFLI
KCHATQATTASVVPNQVIYPVDAIDQWQSNRRDVLVAIYNNLLPGELVLSNLIQTYFRGN
TAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKRDLALPDRSPIL
ITTVEGQNSISIEILRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDVTPNLLG
IYEAILANTYANAVNVYCDSVYRADIPTEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVP
DFFAGGEDILILQLIRAVYDTLSNKLGRNPADIFHLDEVFKVIEEIVSVLVQQKVDARKY
FTESMRSGSFSKPRWDNFLRRPVAQRLPNLDSVIMTQADHVYNYMTQLTHIIPITDCFYI
VKNSGFVDRGSTGPVMASSSVYENVLKVVHTIADFEAANALRLQRRSVDNTSYTDSLSDM
FNGLRSISSSEFVRSVNGRSVFTEGRIDAIKVNMRVKFDLQFITEEGGYSKPPNVKKLMF
SDFLSFLDSHKSDYRPPLLTVPITIGLNNLGETNSNTLRMRSEAIDEYFSSYVGAQILVP
INVVDTRVYTEFSELRNFFTGDVVITDDPFDVWDGVKATYIPIGVHGVRLDPNGDQPPL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggacagtaccggccgagcatatgacggtgcgtctgaattcaaaagtgtccttgttacc
gagggtacttcacactacacaccagtggaagtatataacatcctcgatgaattgaaaacc
attaaaataacgtctaccatagctgagcaatcagtggtgtcacgtactccaattcctctt
tcgaaaattggtttatcagacgttaagaaattgtttgacattaatgtcataaaatgtggc
tcatctttgcggatagtggacgaacctcaagttacgttcatcgtatcgtatgcaaaggat
atctatgataagttcatgtgcatcgaacatgactctgcctatgaaccgagtctgacgatg
catagagtgcgggttatttactcgatgctcaatgactattgtgcaaaaatgatttcggag
gtaccctacgaaagtagctttgtaggggagctccctgtcaaatcagtaactctaaataaa
ctgggtgacagaaatatggatgctttagctgagcatctcttatttgagcaggacgttgtg
aatgctcagcgtgagaaccggattttctatcaaagaaagtccgcgcctgctgtgccagtc
acattcggagatgacttggagccggctgtccgtgaaagagctaacctctaccatcgatat
tcggttccgtatcaccaaatcgagctggcattgcatgcattagcaaatgatctactttca
atacagtactgtcatcctacagtagtgtataattatttgagttccagagctccaaacttt
ctaaggttggatgatcaagtatcgctgaaacttacatccgctgggataggtactcttatg
cctagacctgtggtacagctgcttgattatgatctagtttatatgtcaccgctagccctg
aacaatttagcctcccgattgttgagaaagatctctctacacttagtaatgcaaatggtt
accgcagtgcagcaagatctgggtgaagtggtgagtgtgtcctccaatgttactaatcct
gctagcgcttgcttggtaaggatgaacgttcaaggggtccaaaccttggctgtattcata
gcccagtctatgttaaatccaaacatatcatatggtatgctatctggattgacacttgac
tgtttttcgaactttatttacggcgcatgtctgatgttgtttcaagccctcattcccccc
agcgctttgacggctagacagagattagacataaataaccgttttgcatattttttaatt
aaatgtcatgctacacaagcaacgacagctagcgttgtgcctaatcaagttatttaccca
gtggatgcaattgatcagtggcagtctaatcgaagagacgttttggttgcaatttataat
aatttgctgccaggtgagttggtattaagtaatttgatacagacttactttagaggtaat
actgcacagcaagcggctgaaatattgattcctgcggaccagacttcttatggcgccaat
gagactcgcgctctatcggcaccatatttgtttggagctccaatcaatatgctcgcccca
gatgctagattgtcaacttataagcgtgatctcgctttgcctgatcgctccccgatacta
atcacgactgttgaggggcaaaattcgatctccatcgaaatcttgaggcataagacgggc
ttgatacgtgctatgtatctgaacggcttcgtcacgcaacctccagcgtggattcgtaac
gcgaattcgaatactgcgctgctatcacgatttcttgacgttacgccgaatttattaggt
atttacgaagctattttagctaacacgtatgcaaatgcggtaaacgtttattgcgattcc
gtctaccgggcagatatacctactgaatggaaattgcaccaatcagtggatcctcaggat
ttattgtttggtgtgtttggtattgttccgcaatatcaaattttgaatgaagcggttccg
gatttcttcgctgggggtgaagacatcctaatactacagcttattcgggctgtgtatgac
acgttgtcaaataagcttgggagaaatcccgctgacatatttcatcttgacgaggtcttc
aaagttatagaagagatagtgtcggttttagttcaacaaaaggttgacgctagaaagtac
ttcactgaaagtatgagaagtggctcattctcaaaacctagatgggataactttctaaga
cgtccagtcgctcaacgactaccgaacttagacagcgtcatcatgacgcaggcagatcat
gtgtacaactacatgactcagcttacccatataataccaattactgattgcttttacata
gtaaagaattcgggattcgtcgatcgtggctcgactggtcctgtgatggcatcttcatca
gtctatgaaaacgtgcttaaggtcgttcataccatagctgattttgaagcggctaatgct
ttacgcctacaaaggagaagtgtagacaatacgtcttacactgactctctttctgacatg
ttcaatgggttacggtctatcagttctagcgaatttgttagatccgtcaatggtcgctca
gtgtttactgaaggacgcattgatgcaatcaaggttaatatgcgagtaaaattcgatttg
caattcatcactgaggagggcggctactcaaaacctccaaatgtgaaaaagcttatgttt
tcggactttctgagcttcttagatagtcataagagcgattacaggccaccattgcttact
gtgccgatcaccataggattaaataaccttggtgaaactaattcgaacacactgcgtatg
cgttcggaggcaattgatgaatacttttcaagttacgtcggtgcacaaattttggtaccg
attaacgtcgtagacactcgagtctatactgaattcagtgagctacgaaatttctttact
ggtgatgtggtcattacagatgacccatttgacgtctgggatggcgtcaaggcaacctac
atcccgattggtgtgcatggagttcgcttggatcctaatggagatcagccgcctctgtga
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