Viruses: 956582
Help
Entry
956582 CDS
T40000
Symbol
polymerase, ToSWVsLgp1
Name
(RefSeq) Orthotospovirus tomatomaculae; RNA polymerase
KO
K26280
Tospoviridae RNA-directed RNA polymerase L [EC:
2.7.7.48
3.1.-.-]
Virus
3052585
Orthotospovirus tomatomaculae
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Bunya_RdRp
Motif
Other DBs
NCBI-GeneID:
956582
NCBI-ProteinID:
NP_049362
RS:
NC_002052
UniProt:
P28976
LinkDB
All DBs
Position
NC_002052:34..8661
Genome browser
AA seq
2875 aa
AA seq
DB search
MNIQKIQKLIENGTTLLLSIEDCVGSNHDLALDLHKRNSDEIPEDVIINNNAKNYETMRE
LIVKITADGEGLNKGMATVDVKKLSEMVSLFEQKYLETELARHDIFGELISRHLRIKPKQ
RNEVEIEHALREYLDELNKKSCINKLSDDEFERINKEYVATNATPDNYVIYKESKNSELC
LIIYDWKISVDARTETKQWRNTYKNIWKSFKDIKVNGKPFLEEHPVFVSIVILKPIAGMP
ITVTSSRVLEKFEDSPSALHGERIKHAKNAKLLNISYVGQIVGTTPTVVRNYYANTQRIK
SEVRGILGDDFGSKDVFFSHWTSKYKERNPTEIAYSEDIERIIDSLVTDEIPREEIIHFL
FGNFCFHIETMNDQHIADKFKGYQNSCINLKIEPKADLADLKDHLIQKQQIWESLYGKHL
EKIMLRIREKKRKEKEIPDITTAFNQNAAEYEERYPNCFNDLSELKLTFHDLVPSLKIEL
SSEVDYNNAIINKFRESFKSSSRVIYNSPYSSINNQTNKARDITNLVRLCLAELSCDTTK
MEKQELEDEIDINTGSIKVERTKKSKEWNKQGSCLTRNKNEFCMKDTGRENKTTYFKGLA
VMNIGMSSKKRILKKEEIKERISKGLEYDTSERQADPNDDYSSIDMSSLTHMKKLIRHDN
DDSLSGKRFKGSFFLLHNFNIIEDGKITSVFNNYAKNPECLYIQDSVLKTELETCKKINK
LCNDLAIYHYSEDMMQFSKGLMVADRYMTKESFKILTTANTSMMLLAFKGDGMNTGGSGV
PYIALHIVDEDMSDHFNICYTKEIYSYFRSGSNYIYIMRPQRLNQVRLLRLFKTPSKVPV
CFPQFSKKANEIGKSLKNKDIEKVNLFSMTMTVKQILINIVFSSVMIGTVTKLSRMGIFD
FMRYAGFLRLSDYSNIKEYIRDKSDPDITNCGRYLFRNGIKKLLFRMEDLNLSTNAKPVV
VDHENDIIGGITNLNIKCPITGSTLLTLEDLYNNVYLAIYMMPKSLHNHVHNLTSLLNLP
AEWELKFRKELGFNIFEDIYPKKAMFDDKDLFSINGALNVKALSDYYLGNIENVGLMRSE
IENKEDFLSPCYKISTLKSSKKCSQSNIISTDEIIECLQDAKIQDIENWKGNNLAIIKGL
IRTYNEEKNRLVEFFEDNCVNSLYLIEKLKEIISSGSITVGKSVTSKFIRNNHPLTVETY
LKTKLYYRNNVTVLKSKKVSEELYDLVKQFHDMMEIDLDSVMNLGKGTEGKKLTFLQMLE
FVMSKAKNVTGSVDFLVSVFEKMQRTKTDREIYLMSMKVKMMLYFIEHTFKHVAQSDPSE
AISISGDNKIRALSTLSLDTITSYNDILNKNSKKSRLAFLSADQSKWSASGLTTYKYVLA
IILNPILTTGEASLMIECILMYVKLKKVCIPTDIFLNLRKAQQTFGENETAIGLLTKGLT
TNTYPVSMNWLQGNLNYLSSVYHSCAMKAYHNTLECYKNCDFQTRWIVHSDDNATSLIAS
GEVDKMLTDFSSSSLPEMLFRSIEAHFKSFCITLNPKKSYASSSEVEFISERISKWSDYS
SLLQAFSKLLHRIFAYKLFDDLMSLSIHVTMLLRKGCPNEVIPFAYGAVQVQALSIYSML
PGEVNDSIRIFNKLGVSLKSNEIPTNMGGWLTSPIEPLSILGPSSNDQIIYYNVIRDFLN
KKSLEEVKDSVSSSSYLQMRFRELKEKYERGTLEEKDKKMIFLINLFEKASVSEDSDVLT
IGMKFQTMLTQIIKLPNFINENALNKMSSYKDFSKLYPNLKKNEDLYKSTKNLKIDEDAV
LEEDELYKKIASSLEMESVHDIMIKNPETILIAPLNDRDFLLSQLFMYTSPSKRNQLSNQ
STEKLALDRVLRSKARTFVNISSTVKMTYEENMEKKILEMLKFDLDSYCSFKTCVNLVIK
DVNFSMLIPILDSAYPCESRKRDNYNFRWFQTERWIPVVEGSPGLVVMHAVYGSNYIENL
GLKNIPLTDDSINVLTSTFGTGLIMEDVKSLVNGKDSFETEAFSNSNECQRLVKACNYMI
AAQNRLLAINTCFTRKSFPFYSKFNLGRGFISNTLALLSTIYSKEESYHFVSTASYKLDK
TIRTVVSAQQDMNLEKILDTAVYISDKLQSLFPTITREDIVLILQNVCLDSKPIWQSLED
KMKKINNSTASGFTVSNVILSHNSELNTIQKQIVWMWNMGLCSHRTLDFVIRYIRRRDVR
YVKTEEQDESGNYVSGTMYKIGIMTRSCYVELIASDQDVAVSLRTPFEILNEREYLFDTY
RESIEKLLAEIMFDKVNIINQTTTDCFLRTRRSCIRMTTDNKMIVKVNATSRQIRLENVK
LVVKIKYENVNSDVWDIIESQKSLVLRLPEVGEFFSDMYKTADSETETIKTIKNRLMTSL
TFIEAFGNLSQQIKEIVDDDIRETMDEFLMNIRDTCLEGLENCKSVEEYDSYLDENGFND
TVELFENLLRTHDNFENEYSPLFSEIVDKAKQYTRDLEGFKEILLMLKYSLINDASGFKS
YRATGMHAVELMAKKHIEIGEFNLLGMIQLIKACETCHNNDSILNLASLRNVLSRTYATF
GRRIRLDHDLDLQNNLMEKSYDFKTLVLPEIKLSELSREILKENGFVISGENLKMDRSDE
EFVGLASFNVLRLDEEEMYEGLIKEMKIKRKKKGFLFPANTLLLSELIKFLIGGIKGTSF
DIETLLRNSFRPDIFSTDRLGRLSSSVPALKVYATVYMEYKNVNCPLNEIADSLEGYLKL
TKSRSKEHFLSGRVKKALIQLRDEQSRTKKLEVYKDIANFLARHPLCLSEKTLYGRYTYS
DINDYIMQTREIILSKISELDEVVETDEDNFLLSYLRGEEDAFDEDELDEEEDTD
NT seq
8628 nt
NT seq
+upstream
nt +downstream
nt
atgaacatccagaaaatacaaaaattaatagaaaatggaaccactttactgttgtctatt
gaggattgtgtaggttctaaccacgatctagctttggatttacataagagaaatagtgat
gagatcccagaagatgtgattataaataataatgcaaaaaattatgagacaatgagagag
ttaattgtcaaaatcactgctgatggtgaaggactaaacaaagggatggcaactgtggat
gtcaaaaagctaagtgagatggtctctctgtttgagcaaaaatacctagaaacagagtta
gcaaggcatgacatttttggagagctgatctccaggcacctgagaataaagcccaaacaa
agaaatgaagtggagatagagcatgcactaagagaatatctggatgaactcaacaaaaag
tcctgcattaacaagctctctgatgatgagtttgagagaataaataaagaatatgtagca
actaatgccacccctgataactatgtgatatataaagaatcaaaaaacagtgagctttgt
ttaatcatttatgattggaaaatatctgtcgatgccaggactgaaaccaaacaatggaga
aatacctacaagaatatttggaaatctttcaaagatataaaagtgaatggaaagccattc
ctggaagagcatcctgttttcgtttctatagttatattgaaacctattgctgggatgcca
atcactgttactagtagcagggttttggagaaattcgaagattctccatcagcattgcac
ggagaaagaataaagcatgctaaaaatgccaaattgctaaatatttcttatgttgggcaa
atagttggaaccacacccacagtggtgagaaactattatgcaaacactcaaagaatcaaa
tctgaagtcagaggaatcttaggtgatgattttggatctaaagatgtgtttttcagtcac
tggaccagcaaatacaaagaaagaaatcctactgagatagcctattccgaagatattgaa
agaataattgattcacttgttacagatgaaatccctagagaggaaataatacattttttg
tttggaaatttctgtttccacattgaaacaatgaatgaccagcatatagctgacaaattt
aaagggtaccaaaactcttgtatcaatttaaaaatagagccaaaagctgatttagctgat
ttgaaagaccacttaatccaaaagcagcaaatatgggaatctctgtatggaaaacacctt
gagaagatcatgcttagaattagagaaaaaaagagaaaagaaaaagagatacctgacata
accacagcttttaaccagaatgctgctgaatatgaagaaaggtatcctaactgtttcaat
gatctctctgaactaaaactaactttccatgacttggtccccagtttgaagatagaattg
agctcagaggtagattacaacaacgcaattattaacaagtttcgggagagcttcaaaagt
tcttcaagggttatttataatagcccatatagtagcataaataaccaaacaaataaagca
agagatataacaaacttagttagactgtgtttagcagagctaagttgtgatacaacgaaa
atggaaaagcaggaacttgaagatgaaatagatataaacaccgggagtatcaaagttgag
agaacaaaaaagtctaaagaatggaataagcaaggttcgtgtttaaccagaaacaaaaat
gaattttgcatgaaagatacaggcagggagaacaaaactacctattttaaaggcttagca
gtaatgaatataggaatgagttctaagaaaagaattctaaaaaaagaagaaataaaagaa
aggatctctaaaggcttggaatatgatacctctgaaaggcaggctgacccaaatgatgat
tactcaagtatagacatgtcttctctgactcatatgaaaaaactgataaggcatgacaat
gatgatagcttaagtggtaaaagatttaagggctctttttttctacttcataattttaat
ataatagaggatggtaagatcacatctgttttcaataattatgctaaaaatcctgaatgc
ttgtacattcaagattcagtactgaagactgaattagagacttgcaaaaagataaacaaa
ttatgcaatgatctagccatttaccattactctgaagacatgatgcaattctccaaaggt
ttaatggtggctgacaggtacatgactaaagaaagtttcaagatattaaccacagcaaat
actagcatgatgctattagcattcaaaggggatggaatgaacaccggaggatcgggagtt
ccttacatagcattgcatatagtggatgaagacatgtcagatcattttaacatatgttat
actaaagaaatttatagctatttccgaagtggtagtaattacatttatataatgaggccg
cagagactaaaccaggtgaggctgctgaggcttttcaaaacgcctagtaaagttcctgta
tgttttccacaattttcaaagaaagctaatgaaatcggaaaatcgctgaaaaataaagat
atagaaaaagtaaatctcttttctatgacaatgactgtaaaacagatattaataaatatt
gtgttttcatctgtcatgataggaactgtgacaaagctcagtagaatgggaatttttgat
ttcatgcggtatgcaggttttttgcgactatccgattattctaacataaaagaatacatt
agagacaaatctgatcctgatataactaactgtggcagatatctatttcgtaatggaatc
aaaaaactattgttcagaatggaagatctcaatttaagcacaaatgccaagcctgttgtt
gtggaccacgaaaatgatattataggagggataacaaacttgaatataaaatgtcctata
acaggatcaactctactgacacttgaggacctgtacaataatgtttatttggctatttat
atgatgcctaaatcactgcacaatcatgttcacaatctaacaagcttattaaatctccct
gctgagtgggagctaaagttcagaaaagaattaggtttcaacatatttgaagacatatac
cctaagaaagcaatgtttgatgacaaagacctattctccataaatggagctttgaacgtg
aaagcattatctgattactatctaggaaatatagaaaatgttggtttaatgagatcagaa
atagaaaataaagaagatttcctaagcccttgttataaaatatctactttaaaatcttca
aaaaaatgctcacaatcaaacattataagtactgatgagataatagagtgtcttcaggat
gcaaagattcaagatatagaaaattggaaaggaaataacctagctattataaaagggctt
ataagaacctacaatgaggagaaaaatagattggtggaattttttgaagataattgtgtc
aattcattatatcttatagaaaagcttaaagagataattagtagtggatcaataactgta
gggaaatctgtaacatctaaattcataagaaacaatcatcctttaacagtagaaacatat
ctcaaaacaaaactatattatagaaataatgtaacagttttaaagtctaaaaaagtgtca
gaggagctctatgaccttgtaaaacagttccatgacatgatggaaatagacctagattct
gttatgaacctcgggaaaggtacagaaggaaaaaaactcacattcttgcagatgcttgaa
tttgtcatgtccaaggctaaaaatgtcaccgggtctgtagattttctagtttctgttttt
gaaaaaatgcagagaaccaaaacagacagagaaatatacttgatgagcatgaaagtgaaa
atgatgctttattttatagagcatacattcaaacatgtagcgcagagtgatccatcggaa
gccatatctataagtggagacaataaaataagagcactttctacgttatctttggacaca
atcacgtcttacaatgatattttaaacaaaaattcaaagaagtcaagattggctttccta
tctgcagatcagtcgaaatggtcggcatcaggccttaccacctataaatatgttttagct
atcatattaaatccaattttaactactggtgaagctagcttaatgatagaatgcatctta
atgtatgttaaattgaagaaggtttgtataccaacagatatttttttgaatctaagaaaa
gctcaacaaacttttggggaaaatgaaactgccataggacttttgaccaaaggcttgacg
acaaacacataccctgttagcatgaattggttgcaaggcaatttaaattatctgtcttct
gtttatcactcttgtgcaatgaaagcttatcacaacactttggaatgttacaaaaactgt
gatttccaaactagatggattgtgcactctgatgataatgcaacatcattaatagccagt
ggagaggttgataaaatgctgacagacttttcaagctcatctctgccagaaatgttgttt
agaagcattgaagctcatttcaaaagtttttgcataactttgaacccaaaaaagagttat
gcttcttcatcagaagtagagtttatatctgaaagaattagtaaatggagcgattattcc
tctctattgcaggcatttagcaaactgttgcacagaatcttcgcatataagttatttgat
gatctaatgtcactcagtatacatgttacaatgcttctgagaaaaggctgtcctaatgaa
gttataccttttgcttatggggctgtgcaggtacaagcgttaagcatctattcaatgctt
cctggtgaagtgaatgatagtattagaatttttaacaagcttggagtaagtttaaagtca
aacgagattcccacaaacatggggggctggttgacctctcctatagagccgttgtctata
ttaggtccatcatcaaatgatcaaatcatctattacaatgtgataagagattttttgaac
aaaaaaagtttagaagaagtaaaagatagtgtctcttcttccagttatctacagatgaga
ttcagagagctaaaagaaaagtatgaaagaggaactctggaagaaaaagataaaaagatg
atatttcttatcaatctgtttgagaaagcatcagtgtctgaagattcagacgttctaaca
attgggatgaaatttcaaactatgttaactcagattataaaattacctaattttataaat
gagaatgctttaaacaagatgtcaagttataaagatttttcaaaactttatcctaattta
aaaaagaatgaagatttatataaaagcactaagaacttaaagatagacgaggatgctgtt
ttagaggaagatgagttatataagaagattgcatctagcttagaaatggaatctgtccat
gacataatgataaaaaatcctgaaacaattctgatagcaccattgaatgatagagatttt
ttacttagtcagctgttcatgtacacaagcccttctaaaagaaaccagttatcgaaccaa
tctacagagaaacttgctttagatagagtgttaaggtcaaaagctagaacatttgtaaac
atttcttccactgtgaagatgacttatgaagaaaacatggaaaagaaaatcttagaaatg
ctaaaatttgatttagattcatattgttcatttaaaacatgtgtaaatctagttatcaag
gatgttaatttcagcatgctgattccaatattagattctgcatacccttgtgaatctagg
aaaagagataactacaatttcaggtggtttcagactgagagatggatacctgttgttgaa
ggctctccgggactagtagtaatgcatgctgtctatggatcaaattatatagagaactta
ggtttaaaaaacatccctctaacagacgatagtattaatgttttaacaagcacgtttgga
acaggtttaatcatggaagatgtaaaatccctagttaatggcaaagacagcttcgaaaca
gaggcttttagcaattctaatgaatgtcaaagattggtgaaagcatgcaattatatgata
gcagcacaaaacaggcttttagcaattaacacatgctttactaggaaaagctttcccttc
tattctaagttcaatctagggagagggtttatctcaaacacattagctctcctatccacc
atctacagtaaagaagaatcctatcattttgtttctacagctagttataaattagacaaa
actatcagaactgtggtaagtgctcagcaagatatgaacttagagaaaatactggacact
gctgtatacatatcagataaattgcagtcacttttcccaacaattacaagagaggatata
gttttaatattgcaaaatgtttgccttgacagtaaacctatatggcagagtctagaagac
aaaatgaaaaagattaacaattcaacagcaagtggcttcacagtgtcaaatgtgattcta
tcacataacagtgaattgaacacaatccagaaacaaattgtctggatgtggaacatgggt
ttgtgttctcacagaacattagattttgttatcaggtatattagaagaagggatgtaaga
tatgtaaaaactgaagaacaagatgaatcaggaaattatgtctctggaactatgtacaaa
atagggatcatgacaagaagctgctatgtggaattgatagcatctgatcaagatgtagca
gtttctttgagaacaccatttgagatattgaatgaaagagagtatctttttgacacatac
agagaaagtatagagaaattattggcagaaattatgtttgataaagtgaacataataaat
caaacaaccacagattgttttcttagaaccaggagatcttgcatcagaatgaccacagac
aacaaaatgattgtaaaggttaatgctacatcaagacaaataagactagagaatgtaaaa
ttagttgtaaagataaaatatgaaaatgtgaattccgatgtatgggatattatagaaagc
caaaaatctctagtcttaaggctccctgaagtaggggaatttttctctgatatgtataaa
actgcagactctgaaactgaaacaatcaaaaccataaaaaacaggcttatgacttcttta
actttcatagaagcctttggaaacttatcacagcagatcaaagagattgtagatgatgat
atcagagaaacgatggatgaattcttaatgaacatccgggatacctgcttagaaggtttg
gaaaactgcaaaagtgtggaagaatatgatagctatcttgatgaaaatggatttaatgac
acagtagaactattcgaaaacttgctaagaacacatgacaactttgaaaatgagtatagt
cctcttttttcagagattgttgacaaagcaaaacagtatactagagatttagaaggtttc
aaagaaatactgctcatgcttaaatattctctaataaatgatgcatcaggatttaaaagc
tatagagccactggaatgcatgctgttgagctaatggcaaaaaagcacatagagataggg
gaattcaacttgttaggaatgatccaattgattaaagcttgtgaaacatgccacaacaat
gactctatattaaacttagcaagtttaaggaatgttcttagcaggacatatgccacattt
gggaggagaataagattggatcatgatctggacttgcaaaacaacttaatggaaaaaagt
tatgatttcaagacgctggttttaccagaaataaaattatcagaactatctagggaaata
ctgaaagaaaatgggtttgttatatctggagagaatctaaaaatggataggtctgatgaa
gaatttgtgggtcttgccagttttaatgtgttgaggctagatgaggaagaaatgtatgaa
ggtttgatcaaagaaatgaaaattaaaaggaaaaagaaagggtttttatttccagcaaac
acacttctactaagtgagttgataaagttcttgattggaggaataaagggaaccagcttt
gatatagagacattgttacggaacagttttagaccagacatattttcaactgacagattg
ggaagattaagttccagtgtacctgcactcaaagtttatgcaactgtttatatggaatat
aagaatgtcaattgtcctttaaatgagatagctgacagcttagaaggttatctaaaactg
acaaaaagcaggtccaaggaacatttcttgtctggaagagttaaaaaagctttgatacaa
ttaagagatgaacaatcgcgaactaaaaaactagaggtctataaggatatcgcaaatttc
cttgctaggcacccactatgtttatcagaaaaaacattgtatggaagatatacctactct
gatatcaatgattatatcatgcaaacaagagagattattttgagtaaaataagtgagttg
gacgaggttgttgaaacagatgaagacaatttcttgcttagttatctaagaggggaagaa
gatgcctttgatgaagatgagcttgatgaagaagaagacacagattaa
DBGET
integrated database retrieval system
