Viruses: 956620
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Entry
956620 CDS
T40000
Symbol
CPSMVs1gp1
Name
(RefSeq) Cowpea severe mosaic virus; polyprotein
Virus
12261
Cowpea severe mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
Peptidase_C3
Motif
Other DBs
NCBI-GeneID:
956620
NCBI-ProteinID:
NP_619518
RS:
NC_003545
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Position
NC_003545:257..5833
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AA seq
1858 aa
AA seq
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MKFFAGQTVMDVLQHVSSPTTNLRLLSYCNLKKEEDGKMMLAIKEQRHRRLLTLSYGAMC
FQFSNSVGDEGIEVDDDELMFEIFDALLRTKISNSKGMTHLYSWMRGVYLSTFKVEVQCD
DYNSNLLEKDLAGEAQGLSQFVSGLADWIPSRVKTLAGYAAEGIIEAFKKHFDKLLVEYC
PMAVAACSWITTVWTTIKEWVQSAMDAMSWIMAGCTELISWGMCVIAGSCALSLLEKALV
AMGLISSSFDLAGIFVRSAVVGAFCLTVVNKRSRNCAELLQLVSLAVGAVSSATSSCFQS
PVGQATDVSAESQSGGVEMLESLAKNLTNFCDGTLVSIGKTCNAVNSINTAAGTIKNLVG
RLLSMLSNFAYKLLGLESTFLRDASVVFSENVDGWLKQISWCQDQFLAKAYINQDELMVL
RSLITRGEVMQREMIMGGMKVSPTVCGLINKGCTDLAKLMAGAVMHGTSGTRKIPFVVYA
HGASRVGKTMVINRLIEDFRKELELGEDCVYPRNVVDDYWSGYKRQPIVVIDDFGAVSSD
PSAEAQLIPLISSAPYPLNMADLSEKGMHFDSAIVMCSSNFIECSPESKVRDEMAFRNRR
HVLFTVSLDPNIPYDGDDITKNQIYEIKTWFHDSYHVEATFTSYGDLLAYCKNKWVEHNT
EQEANLKQLGVKKESVAFQQFRSILDLAVFVNQDAENFKQRLETPDGRCHFVSCYDKSGI
LRHYTIDATGDVQEMEKVDSSLDDILLEKTNKMVLAAYKMIKYHKDTNLVIKTQLADLVD
PTKYTADFQFDGVIGSPLFSSQVMPSVKALPLWQRMVLYTVGQNLGRTHSSWYEGIKDKC
MLALSKAYSTEIKDWPVALKIVVGVILATVAGKAFWRFYASMADAGNGGHFVGAVASAFA
GSQAVVAQSRKPNRFDVAQYRYRNIPLRKRNWAEGQMSLDQSTMLIMEKCKANFVFSNIS
CQIVMLPGRQFLCYKHVFASLNSPMYVDIYTANKKYKLYYKPQNRVYFETDSEIMLYKDA
SLEDIPASCWDLFCFDAEKSLPRGSFPAEILSCKLDRTTNQHIPEWADISARTVNQKLDV
EFGEYQTIFYSYLQYDVSTKAEDCGSLIIATIDGRKKIIGIHTAGRANRSGFASYMPQVE
IPVQAQAAEKFFDFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTEKTK
EPSILSSTDLRLGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDT
FEEVDLQVAINGLEGMEYMERVPMATSEGFPHILTRKSGEKGKGRFVYGDGEIFDLIPGT
SVHEAYLTLEETCADTVPALVGIECPKDEKLPLRKIYEKPKTRCFTVLPMEYNLVVRRKF
LKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLLEKGNNILCCDYSSFDGLLTKQVMHL
MSEMINELCGGSSRLKQQRTNLLMACCSRYALCKGEVWRVECGIPSGFPLTVICNSIFNE
LLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEFLKL
NGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTTNNL
EKHEAYLVNVVNVIRELYLHDPREAAELRRKAIQNVDFLKENPKDLPTMAAIKEFYNMQR
QQQFVDSNDNLDSLLNPDFLFVAPHRKMHEAEMELVPKWYLRDLGKAPINVLTGEADRIC
VLVNASIPDHLLPEKVVNISWPYGPGRGGLPTHGWAQANLYNPNSAVVKKLRTLVNQNPD
DRVDICFRHDAVPVAIATIIFLVHLGKVKGRSANEYLTKIIDSAKSLKFLPKECDIIF
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctttgctgggcaaactgttatggatgtgctgcaacatgtttcctctcccacc
accaatttaaggttgttatcttattgcaatcttaaaaaggaagaggatggtaagatgatg
ctggctattaaggagcagaggcaccgacggttgttgacactgtcatatggtgctatgtgt
tttcaattctcaaattcagtaggggatgagggcatagaagtggatgatgatgagttgatg
tttgaaatatttgatgcattgctgcgcacaaagatttcaaactcaaagggcatgacgcac
ttatacagctggatgcgtggagtttatctcagcacattcaaagtagaggtgcagtgtgat
gattacaactcaaatctgctggagaaggatttggctggagaagctcagggtctttcacag
ttcgtttcaggacttgctgactggattcccagtcgtgtaaagaccttggcaggatatgcc
gctgagggcataattgaggcctttaagaagcacttcgacaaattgcttgttgagtactgt
cctatggccgtggctgcgtgtagttggataactacagtatggaccactatcaaagagtgg
gtccaatctgcgatggatgctatgtcgtggattatggctggatgcactgaactcatttct
tggggaatgtgtgtcattgcaggttcatgtgctttatcgttattggaaaaggcattggta
gctatgggtttgatttcttcttcctttgatttagctggtatctttgtacgctctgcggtt
gttggagccttttgtttgacggttgtcaacaagaggagccgcaattgcgctgagttgtta
caactagtttcattggcggtgggagcagtttcaagtgcaacatcatcttgtttccagtct
cctgtagggcaggcaacagatgtgagcgctgagagtcaatcaggtggagttgagatgcta
gagtcacttgctaagaacttgaccaatttctgtgatggcactctggtatctatcggaaag
acttgcaacgctgtaaattcgatcaatacggctgcaggtaccatcaaaaatctggtaggt
agactcttgtctatgctaagtaattttgcatacaaactactaggtttagaatccacattc
ttgcgagacgcttccgtggttttttctgaaaacgttgatgggtggctaaagcaaatatct
tggtgccaagatcaatttcttgccaaggcatacatcaaccaggatgaacttatggtgttg
cgatctctcattaccagaggtgaagttatgcaaagggagatgatcatgggtggtatgaaa
gtttcacctacagtttgtggtttgatcaataaaggatgcacggatctcgccaaattaatg
gcaggggctgtgatgcatggaacgagtggtactcggaaaataccatttgttgtttatgca
catggggcttctagagttggtaaaacaatggtgatcaacagactcattgaagattttcgc
aaagagttggaacttggagaggactgtgtgtatccacgaaatgtggtagatgactactgg
agtgggtacaaaagacaacctattgttgtcattgatgattttggtgctgtgtcttcagat
ccttctgcagaagctcaattaattccattgatctctagtgctccctatccccttaacatg
gctgatctctctgagaagggaatgcactttgattcagctatcgtcatgtgctcatccaat
ttcattgagtgttcaccagaaagcaaggtgcgtgacgaaatggcattcagaaacagacga
catgtgctcttcactgtctcacttgaccctaatataccatatgatggtgatgatatcaca
aagaatcaaatatatgaaatcaaaacttggtttcatgattcgtatcatgttgaagcaact
ttcacatcatatggggacttgctggcatattgcaaaaacaagtgggtggagcacaatact
gagcaagaggccaacttgaagcaacttggagttaaaaaggagagcgttgcatttcagcag
tttcgttccattcttgatttggcagtctttgtcaatcaagatgcggagaatttcaagcaa
aggctggagacgccagatggtaggtgccactttgtgtcatgttatgataagagtggtata
ctcaggcactatactattgatgcaactggagatgtgcaagaaatggaaaaggttgattcc
tctctagatgacatcctattggaaaaaaccaacaaaatggtcttagctgcatataagatg
attaagtaccacaaggacaccaatctggtcattaaaacccagcttgcagatttggtggat
cccacaaagtatactgcagatttccagtttgacggtgttataggatcaccacttttcagc
agccaagtaatgccaagtgtcaaggcattaccactgtggcaaaggatggtactgtacact
gttgggcagaatctgggaagaactcattctagttggtatgagggcatcaaggacaagtgc
atgcttgcactatcaaaagcatactcaactgagatcaaggattggcctgtagcactcaaa
attgttgttggagtgatactggctactgtagcaggtaaggcattttggaggttctatgcc
tcaatggcagatgcaggcaatggtggacactttgtgggagccgttgcttccgcatttgca
ggaagtcaagcggttgttgcacagagtaggaagcccaacaggtttgatgtggctcagtac
aggtaccgaaacatacctctaaggaagagaaattgggcagaagggcaaatgagtctggat
cagtccacaatgctcataatggaaaagtgcaaggccaatttcgtctttagcaacattagc
tgtcagatagttatgttgcctgggcgacaattcttgtgctacaaacatgtgtttgctagt
ctcaatagtccaatgtatgtggatatttatactgccaacaagaagtataaactctattac
aaacctcagaatagggtatactttgagactgatagtgagatcatgctatacaaggatgcc
agtttggaagacatacctgccagctgctgggatcttttttgttttgatgcggaaaaaagt
ttgccacgaggtagtttcccagcagaaatcctctcgtgcaaactagatcggacaacgaat
caacatatcccggaatgggccgacatctcagctcgtactgtcaatcaaaaactggacgtg
gaatttggggagtaccaaaccatcttttattcctatctccagtatgatgtatccacaaaa
gctgaagattgtggttccctaataatagcaaccattgatggtaggaaaaagataataggg
atccacactgctggacgggcaaataggagtggttttgcaagttatatgccgcaggtagaa
ataccagttcaagcacaagcagcggaaaagttctttgattttcttgagaaagaacaacat
gttactgagggcattggaaaggtgggaaatctcaagaaaggagtctgggttccattaccc
actaagaccaatcttgtggaaacaccaaaagagtggcatctgggcactgagaaaacaaaa
gaaccaagtattctcagcagtacggatttaaggctcggtgataagcagtatgatcccttt
gttggaggaatacagaagtacgccgaaccaatgggaattctagatgatgaggtgctccgg
cacgtggcaacagacatagttgaagaatggtttgactgtgtagaccctcaagaagatact
tttgaggaagttgacctgcaggttgctatcaatggtcttgaaggaatggaatacatggaa
agagttcctatggcaacatctgaaggcttcccacacattttgacaaggaaaagtggggaa
aaaggcaaaggtaggtttgtatatggggatggagaaatttttgatctgatcccgggtaca
tctgtacatgaggcatatctgacactggaagagacttgtgcggacactgttccagccctg
gttgggattgaatgtccaaaagatgaaaaacttcctttgcggaagatctatgagaagcct
aaaacaagatgtttcactgtacttcctatggaatataatcttgtagttaggaggaaattt
ctcaagtttgtggtgtttattatgaagaatcggcacagattatcctgccaggtgggcatc
aatccatatggcatggaatggagtcgcctggcaatgagcttgcttgagaaaggaaacaac
attttatgttgtgattacagttcatttgatgggttgttgacaaagcaagttatgcatctc
atgagtgaaatgatcaatgaactgtgtgggggatcttcgcgcctaaagcaacagcgcacc
aatttgttaatggcatgttgttccaggtatgcattatgcaagggagaagtgtggcgcgtt
gaatgtggaattccctctggatttccattgactgtcatttgcaacagcattttcaatgag
ctattggttagatacagctacattaagatttgccaacaagcgcgtgtgccagccaccata
acatacggttttagtacctttgtaaagatggtgacttatggtgatgataacttactgagc
gttcagtctgcaatcactcacgtgtttgatggaaccaagctcaaggagtttctgaaactc
aatggcatcaccatcactgacggcaaagacaaaacttcccctgtgcttaattttcggaat
ttggaagattgtgactttctcaaaaggggctttaagaaagaaagtgatgtagtgtgggtt
ggaccagaggaaaaggaatcgctgtgggcacaactccattatgtcacgaccaacaatctt
gaaaagcatgaagcttatttggtgaacgttgtaaacgtgatcagggaattgtacctacat
gatccaagagaggctgctgagttgcgtcgcaaggcaatacaaaatgtagacttcttgaag
gaaaatcctaaagatttgcccactatggctgctatcaaggagttctataacatgcagcga
cagcaacaatttgtagactccaatgacaatctggatagtcttctgaatccagattttttg
tttgttgccccacatagaaagatgcatgaggccgagatggaattagtgccaaagtggtat
ctgagagatcttggcaaagctccaataaatgttctaactggagaagctgatcgaatttgt
gttctggttaatgcaagtatcccagaccatcttcttccagaaaaggtggtcaatatatca
tggccttatggacccggaaggggaggactgccgactcatggttgggcacaggctaatctc
tacaatccaaatagtgctgtggtgaagaaactgcgtacacttgtgaatcaaaatcctgat
gatcgagtggatatatgttttaggcatgatgcagttccagttgcgattgcaactatcatt
ttcctggttcatttaggaaaggttaaagggagaagcgctaatgaatatttgactaaaata
attgatagtgcaaaatctctgaagttcctacctaaggagtgtgatattattttctga
DBGET
integrated database retrieval system
