Viruses: 956622 Help Entry 956622            CDS       T40000                                  Symbol SqMVs1gp1 Name (RefSeq) Squash mosaic virus; polyprotein Virus 12263  Squash mosaic virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  RdRP_1 RNA_helicase Peptidase_C3 Motif Other DBs NCBI-GeneID:  956622 NCBI-ProteinID:  NP_620657 RS:  NC_003799 UniProt:  Q91PR6 LinkDB All DBs Position NC_003799:236..5812 Genome browser AA seq 1858 aa AA seqDB search MNFTGNGSVASVHQVVHSEDVMFYLKAYTNMTTDNKGATLPRIVATLKEEQNRHVLYLSF YAYCLDFDAGLMEPHSVDVEDFVFEQFHDFVTAMLKGCHSLMPLRSYTKAILAERLQLAV NFVPEITTELGGSGPVEAQMQGLRNIAANMLMWIPKRIGAIAAWTVESIIGSFKEHFLKM INTHCPIVLSTFPWILKIWDRVTEWLTMAADDFAWLLASTKELMTWGMAIMALTTAMSLL DKLLMAVGAITEPMNLSDIFLRTGVVAACCYELTKQSGNCGAQLISLFSGVANVVAGVLS AKFQNQPQTILQDSPIGLLETLAERLTSLCDVSLINLGKTCAAINQIATCANTIKGFVAK IFCTLTHYVWEALGIKTSFLRDATFVLGEDVDGWLQQISQCQNDFIVHASCSQDEFLKLQ VLAEKGNNMRNKILQGVRLSPGIISLVTSGIVMLDKLRREACLQGNRTERKMPFTIFCQG TSRVGKTLLTSRIVKDFQAALGLAEDTVYSRNPAESYWSGYRRQPFVLIDDFGAVKTEPS CEAQLIPLVSSTPYPVPMAAIEEKGMMFDSQFIVCSTNFLEPSPEAKIRDDAPFRNRRHV LINVKIDNERQYDSSDFTQNQIYEIMRYERETYVVEQRFTSYADLFVFLQNKYEAHNAEQ SANIGSVVPYKGKQNLLILRGLLNLANVSNAGLLKAQAKKLGQPEGFREYTHLFTIQHKN RFAHLGFADAYDSVIWYGEHSDVGRSEEMAKMTASHVMKAYKILIQGENLSLLIKNHLRY LVCPDNYDRDFNFTGGVGDTLLEQQLLPDMQALHTWERFVLCAMGYYMETQKMQPWYKTV TEKVFENLKAAYSREFSSWPTPLKAIVGIVLAALVGKGFWFAYKALTEGGNGSSLVGAAS VVLTSTTNAVAQSRKPNRFDVAQYRYRNVPLKRRQWADAQMSLDHSSVAIMSKCKANFEF GNTNVQIVLVPGRRFLGYAHFFKTIKHPITVKIVKDGRHFLHVYDPKGMTYFDDSEICVY HSASFEDIPHTTWDVFCWDWEKSLCKKFPADFLSCKYDRLTMSYEPTYAGINVETVFETL ELRANGAVRKLPCFLKYEAPTVDRDCGSLIVAQVEGRYQIVGIHIGGDGRNGFAAPLPHI PQAADAQCTTKYFSFYPNEQEEETGVALVGQLKPEVWIPLPTKTSLVETEEEWHLDTKSD KVPSILSSEDPRIKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEP DENFDDVDLEVAINGIDGLDYMDRIPLATSEGFPHILSREKGEKGKGRFVETVGGKCALI EGTSVYHAFEILQEQCKKEVPTLIGIECPKDEKLPLRKIYDTPKTRCFTILPMEYNLLVR MKFLKFVRFIMRNREKLACQVGINPYSMEWTRLAGSLLSVGQNILCCDYKSFDGLLSKQV MTVIATMINRLCGGSQESQTMRMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSI FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGFKLNGLIYDSPEEKSSLWAQLHYVNTT NLDKQEAYLVNLNNVLKELYMYSPEEMNMLRRKALQLPWINKDDVLNGAQIKEFFAYQRQ QLLPDNEDSLDMMLKPDLLGSLVPDVVLLDKGVQVSGRLKTINLKYTELGEKRDNEFWVI FNGHFPTNRLPEHCLNIKWEAGTGRGNLPTQSWISNNISRPNSEYNRKIRTAYAAGKVLC FCAWGDMIPVSIMLLLSSARNNWIPKGQTNEALTSFMEYAKSLKFLPRECEYAFTDVK NT seq 5577 nt NT seq  +upstreamnt  +downstreamnt atgaatttcactggaaatgggagtgttgctagcgtccaccaagtagtccattctgaggat gttatgttttatctgaaagcatataccaatatgacaactgacaacaagggcgccactcta ccccgtattgtggcgacgttgaaggaggagcaaaacaggcatgttttgtatttatccttt tatgcctattgcttggattttgatgctgggttgatggaaccccactctgttgacgttgag gactttgtttttgagcaatttcatgattttgtaactgccatgcttaaggggtgtcatagc cttatgccactgagatcttatacaaaagctattttggccgagcgtttgcaattagcagtg aattttgttcctgaaatcactactgagcttgggggttctggtcctgtggaagcccaaatg caagggctgcgaaacattgcagctaacatgttgatgtggatacctaagagaattggtgct atagctgcatggacagtggagagtattattggaagttttaaggaacattttctgaagatg attaatactcattgtccaatagttttgtcgacgtttccctggattcttaaaatctgggat cgtgtgacagagtggttgacaatggcagctgatgattttgcgtggcttttggcctccacc aaggaattgatgacatggggcatggccatcatggccttaactacagccatgagtcttttg gataaattgttgatggcggttggtgccattactgagcccatgaacttgtctgatattttc ttgcgcaccggagttgttgccgcatgttgttatgagctgacaaaacagagcggcaattgt ggagcccagctgatctctctttttagtggtgttgctaatgttgttgcgggggttttgagc gcaaaatttcaaaatcagccccagaccattttgcaagactcccctataggtttactggaa acactcgcggagaggttaacgagtttgtgtgatgtctccttgataaatttgggcaaaacg tgtgccgcaataaaccaaattgcgacatgtgctaacacaattaagggttttgttgcaaag attttttgtactttgacgcattacgtctgggaagctttgggtatcaaaacctcttttttg cgagacgccacttttgttcttggtgaggatgttgatggctggttgcagcaaatctcccag tgccagaatgactttattgtacatgcctcttgttctcaggacgagtttcttaagttgcag gtcttggccgaaaaaggcaataacatgcgaaataagatcctccaaggagtccgcctttcc ccaggtatcataagtttggttacctcaggtattgtgatgttagataagctccgtcgtgag gcttgtcttcagggcaacagaaccgagaggaaaatgccttttaccattttttgccaagga acttctcgcgttggaaaaacattattgacttctagaattgtcaaagatttccaggcagcc ctagggttggctgaggacactgtgtacagcaggaacccggcagaaagttactggagtggg tatcgtcgtcagccttttgttctgattgatgattttggtgcagttaaaactgagccctca tgtgaggctcaattgatccctttggtttcttctactccttatcctgttccaatggcggcc attgaagaaaagggaatgatgtttgattcacagttcattgtgtgttcaacgaattttcta gaacccagtccagaggccaaaatacgtgatgatgccccgttccgcaatcgccggcacgtg ttgattaatgtcaagattgacaacgaaaggcagtacgattctagtgactttacgcaaaat cagatctatgagataatgcgctatgagagagagacatacgttgtggagcaaagattcact tcttatgcggatttatttgtgtttcttcaaaataaatatgaggcccacaatgctgaacag tctgccaacataggaagtgtagttccctacaaaggcaagcaaaacctactaattctacgt ggtctgctgaatttggccaatgtttctaatgctggtttattaaaagctcaagctaagaaa cttggccaaccagaaggttttagggaatacactcacttattcactatccagcataaaaat cgttttgcacatcttggtttcgctgatgcatatgactccgtgatatggtatggggaacat tctgatgttggtaggagtgaggagatggccaaaatgacggcaagccatgtcatgaaggct tacaaaatccttatacagggtgaaaacttgagcttactcattaaaaatcacttgcgctat cttgtgtgtcctgacaattatgatcgtgattttaacttcacggggggagttggggataca ctgttggagcaacaattgctgccagatatgcaggctcttcacacctgggaaagatttgtt ttgtgtgctatgggttactacatggaaactcagaaaatgcaaccatggtacaagaccgtc actgaaaaagtttttgagaatctcaaggcagcctattcacgtgagtttagttcgtggccc actcctttgaaagccatagttggcatcgtcttggcagctctggttggtaaaggtttttgg tttgcctacaaggctcttactgaaggtggcaatggttccagtcttgttggggctgcttct gttgtcttgacaagcaccaccaatgccgtcgcccagagcaggaagccaaatcgttttgat gtggcacaatatcgttaccgtaatgttcctttgaagcgcaggcagtgggctgatgcacag atgtctttggatcatagcagcgttgctattatgagcaagtgcaaggctaactttgaattc ggaaataccaatgtgcaaattgttttagttcctggacggaggtttttaggatatgcgcat ttctttaagaccattaaacatccgataacagttaagatagttaaagacggccggcacttt ctccatgtttatgatcccaaaggcatgacatattttgacgattctgagatctgtgtttat cacagcgctagtttcgaggacatcccacacactacttgggatgttttttgctgggattgg gagaaaagtctttgtaagaaatttccagctgactttctttcctgtaagtatgacagattg actatgtcatatgagcctacatacgctggcattaatgtggagacagtttttgaaactttg gaattgcgtgccaatggtgccgtgcgcaagctcccttgcttcctgaaatatgaggctccg acggttgatcgggattgtgggagtcttatagttgcacaggtagaaggacgataccaaatc gttggtatacatattggaggtgacgggagaaatggctttgcggcccctttgccccatatt ccacaggctgccgatgcacagtgcactaccaagtactttagtttctatccaaatgagcag gaagaagagacaggtgtcgcactagttggtcagcttaagcccgaggtatggatacccttg ccaacgaaaacctcattggtggagacggaggaggagtggcatttggacacaaaaagtgac aaggtgcctagtatcttgagttctgaagaccctcgtattaagcaagggggcaatgaagga tatgatccttttagaggaggtgttactaaatattcacaaccaatggggcacctgtgtgga gaaacccttggggaagtagccaatgagattttggaagagtggcatgattgccttgaaccc gatgagaattttgatgatgttgatttggaagtggccataaatggtattgatggtttggat tacatggatcgtattcccttagccacctctgaaggatttcctcatatcttgtcaagagaa aaaggggaaaaaggcaaagggagatttgttgaaaccgtgggtggtaagtgcgctcttata gaaggcacttcagtgtatcatgcttttgaaatcttgcaagagcaatgtaagaaggaagtt cccactctgatagggattgaatgccctaaggatgaaaagttgcctctgcgcaagatttat gacaccccaaagacgcgttgtttcacaatacttcccatggaatacaatttgttggtgagg atgaagtttttaaaatttgttcgcttcattatgagaaatcgtgagaagcttgcctgtcag gttggaatcaacccctacagcatggagtggacgagattggctgggagtcttttaagtgtc ggccagaatattttgtgctgtgactataaatcatttgatggccttttgagcaagcaagtt atgacggttatcgccaccatgatcaacagattgtgtggtggatcgcaggagagtcagacc atgagaatgaatctccttatggcttgttgttcccgttatgctatttcaaagaacgaggtg tggcgtgttgaatgcggtataccttctggatttcctttaactgtcatttgtaattccatt ttcaatgaaatacttgtgaggtactgttatcggaaaattttggagaagaacaatgtacca cgacctctacatgtgaattttcctcggatggtgaaattggttacttatggggatgacaat ctgatttccgttagtcatgttgtcgcaagtgtgtttaacggtagaactctgaaagctgaa atggcacagtttggagtgaccataacagatggtattgacaaaacaagtcccacactggaa tttcgtaagttgagcaattgtgatttcttgaaaagaggattcaaattaaatggtctcatt tacgattcaccagaggagaagagtagtctgtgggctcagcttcattatgtcaacacaact aacctggataagcaagaagcatatcttgtgaatttgaataatgtgctgaaggaattatat atgtatagtccagaggaaatgaacatgctaagaaggaaggctttgcagctaccttggatt aacaaggatgatgtgctaaatggggctcagattaaagagttttttgcctatcagcgccaa caactacttccagacaatgaggatagcttggatatgatgttaaagccagatcttttggga tctcttgttcctgacgttgtgttgttggataagggtgttcaggtgtcaggcaggctcaaa acgataaatctcaagtatactgagctcggtgaaaagcgtgacaatgagttttgggttatc tttaatggacattttcctaccaaccgtctccctgagcactgtttgaacattaaatgggag gcaggcactggtagagggaatttaccaacacagtcttggataagtaacaacatttctagg cccaattctgagtataacaggaagattaggactgcttatgctgctggaaaggttctgtgt ttctgtgcctggggtgatatgatacctgttagtattatgttgctgctttcctcagccaga aacaactggattcccaaaggacaaacgaatgaggccttgacctctttcatggaatatgcc aaaagcctgaaattcctcccacgtgagtgtgagtatgcctttactgatgtgaagtaa

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