Viruses: 956628 Help Entry 956628            CDS       T40000                                  Symbol CPMVs1gp1 Name (RefSeq) Cowpea mosaic virus; polyprotein Virus 12264  Cowpea mosaic virus Taxonomy SSDB OrthologParalogGFITVOGVOG cluster Motif Pfam:  RdRP_1 RNA_helicase Peptidase_C3 Motif Other DBs NCBI-GeneID:  956628 NCBI-ProteinID:  NP_613283 RS:  NC_003549 UniProt:  P03600 LinkDB All DBs Position NC_003549:207..5807 Genome browser AA seq 1866 aa AA seqDB search MGLPEYEADSEALLSQLTIEFTPGMTVSSLLAQVTTNDFHSAIEFFAAEKAVDIEGVHYN AYMQQIRKNPSLLRISVVAYAFHVSDMVAETMSYDVYEFLYKHYALFISNLVTRTLRFKE LLLFCKQQFLEKMQASIVWAPELEQYLQVEGDAVAQGVSQLLYKMVTWVPTFVRGAVDWS VDAILVSFRKHFEKMVQEYVPMAHRVCSWLSQLWDKIVQWISQASETMGWFLDGCRDLMT WGIATLATCSALSLVEKLLVAMGFLVEPFGLSGIFLRTGVVAAACYNYGTNSKGFAEMMA LLSLAANCVSTVIVGGFFPGEKDNAQSSPVILLEGLAGQMQNFCETTLVSVGKTCTAVNA ISTCCGNLKALAGRILGMLRDFIWKTLGFETRFLADASLLFGEDVDGWLKAISDLRDQFI AKSYCSQDEMMQILVLLEKGRQMRKSGLSKGGISPAIINLILKGINDLEQLNRSCSVQGV RGVRKMPFTIFFQGKSRTGKSLLMSQVTKDFQDHYGLGGETVYSRNPCDQYWSGYRRQPF VLMDDFAAVVTEPSAEAQMINLISSAPYPLNMAGLEEKGICFDSQFVFVSTNFLEVSPEA KVRDDEAFKNRRHVIVQVSNDPAKAYDAANFASNQIYTILAWKDGRYNTVCVIEDYDELV AYLLTRSQQHAEEQEKNLANMMKSATFESHFKSLVEVLELGSMISAGFDIIRPEKLPSEA KEKRVLYSIPYNGEYCNALIDDNYNVTCWFGECVGNPEQLSKYSEKMLLGAYEFLLCSES LNVVIQAHLKEMVCPHHYDKELNFIGKIGETYYHNQMVSNIGSMQKWHRAILFGIGVLLG KEKEKTWYQVQVANVKQALYDMYTKEIRDWPMPIKVTCGIVLAAIGGSAFWKVFQQLVGS GNGPVLMGVAAGAFSAEPQSRKPNRFDMQQYRYNNVPLKRRVWADAQMSLDQSSVAIMSK CRANLVFGGTNLQIVMVPGRRFLACKHFFTHIKTKLRVEIVMDGRRYYHQFDPANIYDIP DSELVLYSHPSLEDVSHSCWDLFCWDPDKELPSVFGADFLSCKYNKFGGFYEAQYADIKV RTKKECLTIQSGNYVNKVSRYLEYEAPTIPEDCGSLVIAHIGGKHKIVGVHVAGIQGKIG CASLLPPLEPIAQAQGAEEYFDFLPAEENVSSGVAMVAGLKQGVYIPLPTKTALVETPSE WHLDTPCDKVPSILVPTDPRIPAQHEGYDPAKSGVSKYSQPMSALDPELLGEVANDVLEL WHDCAVDWDDFGEVSLEEALNGCEGVEYMERIPLATSEGFPHILSRNGKEKGKRRFVQGD DCVVSLIPGTTVAKAYEELEASAHRFVPALVGIECPKDEKLPMRKVFDKPKTRCFTILPM EYNLVVRRKFLNFVRFIMANRHRLSCQVGINPYSMEWSRLAARMKEKGNDVLCCDYSSFD GLLSKQVMDVIASMINELCGGEDQLKNARRNLLMACCSRLAICKNTVWRVECGIPSGFPM TVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFD GKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWS QLHYVNCNNCEKEVAYLTNVVNVLRELYMHSPREATEFRRKVLKKVSWITSGDLPTLAQL QEFYEYQRQQGGADNNDTCDLLTSVDLLGPPLSFEKEAMHGCKVSEEIVTKNLAYYDFKR KGEDEVVFLFNTLYPQSSLPDGCHSVTWSQGSGRGGLPTQSWMSYNISRKDSNINKIIRT AVSSKKRVIFCARDNMVPVNIVALLCAVRNKLMPTAVSNATLVKVMENAKAFKFLPEEFN FAFSDV NT seq 5601 nt NT seq  +upstreamnt  +downstreamnt atgggtctcccagaatatgaggccgatagtgaggctttattaagtcaactcactatcgaa ttcacacccggcatgacagtttcttcattgttggcacaagtcaccactaatgactttcac agtgccattgagttttttgctgcagaaaaagcagtagacattgagggcgttcattacaat gcgtatatgcaacaaattaggaaaaaccctagtttattacgcatttccgtggtagcttat gctttccacgtttcagacatggtagctgagaccatgtcttatgatgtttatgaatttctg tataaacattatgcccttttcatctctaatctggtgaccagaacactcagatttaaagag cttttgctgttctgtaagcagcaatttctggagaaaatgcaagcttcaatagtctgggct ccggaacttgagcaatatcttcaagttgaaggggatgctgtggctcaaggagtttcacaa ctgttatacaagatggtcacttgggtgcccacttttgtcagaggagcagtagactggagc gttgatgcgattttggtcagtttcaggaaacattttgaaaagatggttcaggagtatgtg cccatggctcatcgcgtttgcagttggctgagccaactatgggataagatcgtgcaatgg atctcacaagcaagtgagaccatgggttggtttctagatggttgtcgggatttgatgact tggggaattgccactctcgcaacatgtagtgctctctccctggttgagaagctgttagtc gcaatgggttttctggttgagcctttcggcttgagtggaatcttcttgcggacgggagtt gttgcggcagcttgttataactatgggactaattctaagggttttgccgagatgatggct ttgttgtcattggcggctaactgtgtctctacagttatagttggtggctttttccctggt gaaaaggacaatgcacagagtagtcctgttatcctcttagaaggattggctgggcagatg caaaacttttgtgagactacacttgtcagtgttgggaaaacatgcactgccgtcaatgct atctcaacatgttgtgggaatctgaaagcactggccggaaggatcttgggcatgctcaga gattttatctggaagactttgggctttgagaccagatttctagcagatgcatctttgctt tttggcgaggatgttgatggatggctcaaagcaatcagtgatctgcgagatcaatttatt gccaaatcatactgttcgcaggatgagatgatgcagattttggtgttgcttgaaaaggga aggcagatgcggaaaagtggtctttctaaaggaggcatttctcctgctatcattaatctg attctcaaagggattaatgatcttgaacaattgaaccgcagctgttcagtgcaaggagta agaggagttaggaaaatgccatttaccattttcttccaaggaaagtcacgcactggtaag agtttgctgatgagtcaggttacaaaggattttcaggatcactatggattgggtggagaa actgtgtacagtagaaatccttgtgatcaatattggagtggatatcggcggcaacctttt gtgctgatggatgattttgccgccgttgttactgagccgtctgctgaggctcagatgatc aatctgatttctagtgctccatatcctttgaatatggctggacttgaagaaaaaggaatt tgttttgattctcaatttgtttttgtttccaccaacttcttggaagtatctcctgaagcc aaagttagggacgatgaggctttcaagaacaggagacatgtgattgttcaggtttcaaat gatcctgccaaagcatatgatgctgcaaattttgctagcaaccaaatttacaccattttg gcatggaaggatggtcgatacaacaccgtgtgcgttattgaggactatgatgagctggtg gcatatttgttgactaggagtcaacagcatgctgaagagcaggagaagaatcttgctaac atgatgaagagtgctacatttgaaagtcatttcaaaagtttagttgaagtccttgagctc ggttctatgatatctgctggttttgatatcattcggccagaaaaacttcctagtgaagct aaggagaagagagtcctttacagtattccctacaatggggagtattgtaatgcactcatt gatgacaattacaatgttacttgctggtttggtgagtgtgttggtaatcctgagcagctc tctaagtacagtgaaaagatgcttttgggtgcttatgaatttcttctgtgttctgagagc ttgaatgttgtaattcaggcacatttgaaggaaatggtttgccctcaccattatgacaag gagctcaattttattggcaagataggagagacctactatcacaatcagatggtttcaaat atcggctctatgcagaaatggcatcgtgccattctgtttggaattggggttctcttggga aaggaaaaagagaagacatggtaccaagttcaggttgccaatgttaaacaagctctttac gacatgtacactaaggagattcgtgattggcccatgccgatcaaagtcacctgtggaatt gtcttggcagctattgggggtagtgccttttggaaagtgtttcaacaactagtgggaagc ggaaatggtccagtattgatgggtgtggctgctggagcattcagtgctgagcctcaaagt agaaagcccaataggtttgatatgcagcaatacaggtacaacaatgttcctctcaagaga agagtttgggcagacgcacaaatgtctttggatcagagtagtgttgctatcatgtctaag tgtagggctaatctggtttttggaggcactaatttgcaaatagtcatggtaccaggaaga cgctttttggcatgcaaacatttcttcacccacataaagaccaaattgcgtgtggaaata gttatggatggaagaaggtactatcatcaatttgatcctgcaaatatttatgatatacct gattctgagttggtcttgtactcccatcctagcttggaagacgtttcccattcttgctgg gatctgttctgttgggacccagacaaagaattgccttcagtatttggagcggatttcttg agttgtaaatacaacaagtttgggggtttttatgaggcgcaatatgctgatatcaaagtg cgcacaaagaaagaatgccttaccatacagagtggtaattatgtgaacaaggtgtctcgc tatcttgagtatgaagctcctactatccctgaggattgtggatctcttgtgatagcacac attggtgggaagcacaagattgtgggtgttcatgttgctggtattcaaggtaagatagga tgtgcttccttattgccaccattggagccaatagcacaagcgcaaggtgctgaggaatac tttgattttcttccagctgaagagaatgtatcttctggagtggctatggtagcaggactc aaacaaggagtttacataccattacccacaaaaacagcgctagtggagaccccctccgag tggcatttggacacaccatgtgacaaagttcctagcattttagttcccacggatccccga attcctgcgcaacatgaaggatatgatcctgctaagagtggggtttccaagtattcccag cctatgtctgctctggaccctgagttacttggcgaggtggctaatgatgttctcgagcta tggcatgactgcgctgtagattgggacgattttggtgaagtgtctctggaggaagctttg aatggatgtgaaggagtggaatatatggaaaggattccattagcaacttctgagggcttt ccgcacattctttctagaaatgggaaagaaaaggggaaaagacggtttgttcagggagat gattgtgttgtctcactaattccaggaactactgtagccaaagcttatgaggagttggaa gcaagtgcacacagatttgttcccgctcttgttgggattgaatgtccaaaagatgagaag ttgcctatgagaaaggtttttgataagcctaagaccaggtgttttaccattttgccaatg gaatataatttggtcgttcgtaggaagtttctgaattttgtgcgctttatcatggccaat cgtcacagactcagttgtcaagtgggtattaatccatattcaatggaatggagtcgctta gcagcaaggatgaaagagaaaggcaatgatgtcttgtgttgtgattatagctcattcgat ggcttgctttctaagcaagtgatggatgtcattgctagcatgatcaatgaactttgtggt ggagaggatcaactcaaaaatgcaaggcgaaacttgttaatggcgtgttgctctaggttg gctatttgcaagaatacagtatggagagttgagtgtggtattccttcagggtttccaatg acagtgattgtgaatagcatttttaatgagattctcattcgctatcattacaagaaactc atgcgcgaacaacaagctcctgaactgatggtacagagttttgataaactcatagggctg gtgacttatggtgatgataatctgatttcagtgaatgctgttgtgacaccctattttgat gggaagaaattgaagcaatctttggctcagggtggtgtgactatcactgatggtaaggac aaaacaagtttggaacttccttttcgcagattggaagaatgtgattttctcaagagaact tttgttcagaggagcagtaccatctgggacgctccagaggataaggcaagtttgtggtcg cagcttcattatgttaattgcaacaattgtgagaaagaagttgcttatttgactaatgtt gttaatgttcttcgtgaactttatatgcatagtcctcgggaagccacagaatttaggagg aaggtcttaaagaaggtcagttggatcactagtggagatttgcctactttggcacaattg caagagttctatgagtaccagcggcagcaaggtggggcagacaacaatgacacttgtgac ttgttaacaagtgtagacttgctaggtcctcctttgtcttttgagaaagaagcgatgcac ggatgcaaagtgtctgaagaaatcgtcaccaagaatttggcatattacgatttcaaaagg aaaggtgaggatgaagtggtatttctgttcaatacgctctatcctcagagttcattgcct gatgggtgtcactctgtgacctggtctcagggtagtggaaggggaggtttgcccacacaa agttggatgagctataatataagcaggaaagattctaatatcaacaagattattagaact gctgtttcttcgaagaaacgagtgatattctgtgctcgtgataatatggttcctgttaac attgtagctttgctctgtgctgttagaaacaagctgatgcccactgctgtatctaatgct acacttgtcaaggtgatggaaaatgccaaagctttcaagtttttaccagaagagttcaat ttcgctttttctgatgtttag

DBGET integrated database retrieval system