Viruses: 956646
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Entry
956646 CDS
T40000
Symbol
ToRSVs2gp1
Name
(RefSeq) Tomato ringspot virus; polyprotein
Virus
12280
Tomato ringspot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
Nepo_coat
Nepo_coat_C
Nepo_coat_N
Auxin_canalis
T6SS_Tle1-like_C
Motif
Other DBs
NCBI-GeneID:
956646
NCBI-ProteinID:
NP_620762
RS:
NC_003839
UniProt:
P25247
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Position
NC_003839:76..5724
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AA seq
1882 aa
AA seq
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MSSICFAGGNHARLPSKAAYYRAISDRELDREGRFPCGCLAQYTVQAPPPAKTQEKAVGR
SADLQKGNVAPLKKQRCDVVVAVSGPPPLELVYPARVGQHRLDQPSKGPLAVPSAKQTST
AMEVVLSAEEAAITAPWLLRPCKGEAPPPPPLTQRQQFAALKKRLAVKGQQIIREHIRAR
KAAKYAAIAKAKKAAALAAVKAAQEAPRLAAQKAAISKILRDRDVAALPPPPPPSAARLA
AEAELASKAESLRRLKAFKTFSRVRPALNTSFPPPPPPPPARSSELLAAFEAAMNRSQPV
QGGFSLPTRKGVYVAPTVQGVVRAGLRAQKGFLNAVSTGIVAGARILKSKSQNWFRRSMG
IAHDYVEGCMASTVLGCAGPVVQRQEACSVVAAPPIVEPVLWVPPLSEYANDFPKLTCST
FTEWQRPRKQSIAISNLFRKLIDRALLVSGVSLIASVLLFEIAENFAVRQAVCPVEMPSC
ATSVSEKSLVSLDEGNFYLRKYLSPPPYPFGRESFYFQARPRFIGPMPSMVRAVPQIVQQ
PTMTEELEFEVPSSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLFEDQLPE
GPLPSFSWSSPLPLFANFKVNRGACFLQVLPQRVVLPDECMDLLSLFEDQLPEGPLPSFS
WSSPLPLFASFKVNRGACFLQVLPARKVVSDEFMDVLPFLFSPLVSHQEEEPEMVPAVLE
AADSVGDITEAFFDDLECESFYDSYSDEEEAEWAEVPRCKTMSELCASLTLAGDAEGLRK
SHGVFLKRLVTYLQSFEEPLYSSRAFYSVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRE
SVDAMWRCPGRLLNTKRTFTRDDWERVQYLRIGFNEGRYRRNWRVLNLEEMDLSLHEYPE
ISSAPVQSSLFSRVVDRGATLASSIPFVTRSNCQSSLGTPGLNVHTIHQEAPTTLRAPPF
TGARNVMGSSDAGANAAPYRSEARKRWLSRKQEDSQEDNIKRYADKHGISFEEARAVYKA
PKEGVPTQRSILPDVRDAYSARSAGARVRSLFGGSPTTRAQRTEDFVLTSPSAGDASSFS
FYFNPVSEQEMAEQERGGNTMLSLDAVEVVIDPVGMPGDDTDLTVMVLWCQNSDDQRALI
GAMSTFVGNGLARAVFYPGLKLLYANCRVRDGRVLKVIVSSTNSTLTHGLPQAQVSIGTL
RQHLGPGHDRTISGALYASQQQGFNIRATEQGGAVTFAPQGGHVEGIPSANVQMGAGEHL
IQAGPMQWRLQRSQSSRFVVSGHSRTRGSSLFTGSVDRTQQGTGAFEDPGFLPPRNSSVQ
GGSWQEGTEAAYLGKVTCAKDAKGGTLLHTLDIIKECKSQNLLRYKEWQRQGFLHGKLRL
RCFIPTNIFCGHSMMCSLDAFGRYDSNVLGASFPVKLASLLPTEVISLADGPVVTWTFDI
GRLCGHGLYYSEGAYARPKIYFLVLSDNDVPAEADWQFTYQLLFEDHTFSNSFGAVPFIT
LPHIFNRLDIGYWRGPTEIDLTSTPAPNAYRLLFGLSTVISGNMSTLNANQALLRFFQGS
NGTLHGRIKKIGTALTTCSLLLSLRHKDASLTLETAYQRPHYILADGQGAFSLPISTPHA
ATSFLEDMLRLEIFAIAGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFR
NFKIDDWKFEWPARLPDILDDKSEVLLRQHPLSLLISSTGFFTGRAIFVFQWGLNTTAGN
MKGSFSARLAFGKGVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSGPPGSMEPYIYV
RLTQAKLVDRLSVNVILQEGFSFYGPSVKHFKKEVGTPSATLGTNNPVGRPPENVDTGGP
GGQYAAALQAAQQAGKNPFGRG
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccatttgtttcgccggtggcaaccacgccaggttgccatcgaaggctgcttac
tatcgggctatttccgatagggagctggaccgcgagggtcgcttcccttgcgggtgtcta
gcacagtatactgtgcaagccccccctcctgccaagacacaggagaaagccgtaggcagg
tccgctgacctccaaaagggtaatgttgctccccttaagaagcaacgctgcgatgttgtg
gtcgcagtctctggacctcctcctttggagttggtctaccctgcccgggtagggcaacat
aggttggaccaaccttcaaaaggtcccttggcagtcccctctgccaagcaaacctccact
gcaatggaggttgttctttctgctgaggaggcggctatcaccgccccctggcttcttcgc
ccctgcaagggcgaagccccccccccccccccccttacacagaggcagcaatttgctgcc
ctaaagaagaggctggccgtcaagggccagcaaatcattcgcgagcacattcgtgctcgc
aaggcggccaaatatgccgccatcgccaaagccaaaaaggctgcggctcttgctgccgtt
aaggcagcgcaggaggctcctcgcctcgcggcccaaaaggccgccatcagcaagatcctt
cgggatcgagatgttgctgctctcccccctcccccccctccttctgctgccagattggca
gccgaggccgaattggcctcaaaggccgagtctctccggaggctcaaagcctttaaaact
tttagcagggtacgccctgctttaaacacttcttttcctccccctcccccaccccctccg
gctcggtcttccgagcttttggcagcttttgaggctgccatgaacaggtctcagcctgtt
caagggggcttctccctccctacccgcaagggtgtttatgtcgctcccaccgttcagggt
gtggtgcgcgctgggcttcgtgcccagaagggctttttgaatgccgtctccaccggcatt
gtggctggagctcgcattttaaagagcaaaagccaaaattggtttaggaggagcatgggc
attgcccatgattatgttgaaggatgcatggccagcactgttttaggttgtgctgggcct
gttgtgcaacgacaggaagcttgcagcgttgttgctgcacctcctatagtggagcccgtt
ttgtgggttcccccattgagcgagtacgctaacgattttcctaagcttacttgctctact
tttactgaatggcaaagaccgcgcaagcaatctattgccatttctaaccttttccgcaag
ctcattgatcgtgctttgcttgtgagtggcgttagcttgattgcgagcgtcctcctattt
gagattgcggaaaattttgccgtgcgacaggcggtttgcccagtggaaatgccgtcttgc
gcaacctctgtttcggagaaatccttagtctcattggatgaagggaatttttatctccgt
aaatatttatcaccacctccctatccttttggtagggaaagtttctattttcaagctagg
ccccgttttattgggcctatgccttctatggttagggctgtaccacaaattgtacaacag
cctaccatgacggaggaactcgaatttgaagttccttcctcatggtcttctcctttgcct
ctgttcgcgaattttaaagtgaataggggcgcatgttttttgcaagtcctgcctcaaagg
gttgttttacccgatgaatgcatggatttgctttctctttttgaggatcaattgccggaa
gggcctttgccttcctttagttggtcttcacctttacctctattcgcgaattttaaagtg
aataggggtgcatgttttttgcaagtcctgcctcaaagggttgttttacctgatgaatgc
atggatttgctttctctttttgaggatcaattgccggaagggcctttaccttcctttagt
tggtcttcacctttacctctattcgcgagttttaaagtgaataggggtgcatgctttttg
caggttttgcctgcgcgcaaggtcgtctctgatgagttcatggacgtcttgccctttttg
ttctctccactggtatcgcaccaggaagaggaaccagaaatggttcctgctgtgttggaa
gcagcagattcagttggtgatatcaccgaagccttctttgatgacttggaatgtgagtct
ttctatgactcatattctgatgaagaagaagctgagtgggctgaagtgccaaggtgtaag
actatgtctgaactttgcgcttctcttactcttgccggtgacgccgaggggctacgtaag
tctcacggggtttttttaaaacgccttgtgacttaccttcagtccttcgaagagccactt
tactcttcacgcgccttttatagcgtgaaggtgaagccagtttatcgtcccaaaaaattt
gagggacatatcgattgtacctgcctcgatggcaatatgggcgagtgggaatggcgcgaa
agcgtcgacgctatgtggcgttgcccagggcgcttgctcaatacaaagcgcacattcact
cgcgatgattgggagcgtgtgcaatatttacgcataggcttcaatgagggtagataccgc
cgaaattggcgcgttttaaaccttgaggagatggatctctctttgcatgaatatccagag
atttcgtctgccccagtacagtcctctcttttttcgagggttgtcgataggggagccacc
ttggcaagtagtatcccctttgttactcgctctaactgccagtcttctctaggaactcct
ggtttaaatgtacatactatacaccaggaagcccctactacattgcgagctccacctttt
acaggagcgcgcaatgtaatgggatcctctgatgcgggtgcaaatgctgctccgtaccgc
tcagaagcgcgcaagcgctggctgagtcgtaaacaagaggattcccaagaagataacatt
aagaggtatgccgataagcacggcatttcctttgaagaggctagagctgtctacaaggcc
ccaaaggaaggagtgcctacccagcgctccattctgcctgatgttagagatgcttattct
gcccgttctgctggcgctcgggttcggtccctcttcggaggatcccctaccacgcgcgca
cagaggacggaagattttgtgttaacgagcccgtctgcgggggatgcaagctcgtttagt
ttttattttaatcccgtttctgagcaagagatggctgagcaagagcgtggtggtaatact
atgctgtctcttgatgcggttgaggtcgttatcgacccagttggcatgcctggtgatgac
actgatttgactgttatggtcttgtggtgtcaaaattcagatgatcagcgcgctctgatc
ggggccatgtctacttttgtgggcaatggcctggccagagccgttttctatcccgggctt
aaattattatatgccaattgtagagtgcgagatggccgagttttaaaggtcattgtgagc
agcacaaattcaacgctcacgcatggtttgccccaggctcaagtctccattgggactttg
cgccagcatttggggccaggtcatgatcgcactatctctggtgccctgtatgcttcccaa
caacagggtttcaatatacgcgccacggaacaaggtggtgctgtaacatttgccccccaa
gggggccatgttgagggtatccccagcgccaatgtacagatgggcgctggggagcattta
attcaagcgggtcccatgcagtggcgcttgcagaggtcgcaatcttctcgatttgtggtc
tctggtcattcgcgaacgcgtggaagctctttgtttactggaagtgtcgataggacgcag
cagggaacgggggcttttgaagacccgggttttttaccacccaggaattcttctgttcag
ggcgggtcctggcaagaaggtactgaagccgcttatttaggcaaagttacctgtgcgaag
gacgccaagggtggaactttattgcacactttggatattataaaagagtgcaaatcccaa
aatttattaaggtataaagaatggcaacgtcaaggctttcttcatggaaagcttagattg
cgctgctttatacccactaacattttttgtgggcattccatgatgtgttccttggacgcg
tttggtcgttatgattcgaacgtgctaggtgctagttttccagtgaagttggcaagttta
ttgccaacggaggtgattagtctggctgatgggcccgtggtcacgtggacgtttgatatt
gggcgtctgtgtggtcatggtctctattattccgagggcgcttatgcgaggcccaaaatt
tattttttagttctttccgataatgatgttcctgcagaagcagattggcaatttacctat
cagcttttgttcgaggatcatacattttcgaattcctttggggcggttccttttattacc
ttaccccatatttttaatagattagatataggttattggcgcgggccaacagagatagat
ttaacatcaactcccgcaccaaacgcctatcgtttacttttcggcttgtccactgtcatt
agtggtaacatgtcgactttgaatgccaatcaagccttattgcgttttttccagggctcg
aatggcactttacatgggcgcattaaaaagatagggacagcacttacaacctgttccctt
ttattatcgttgcgccacaaagatgcgagtctcacattggagaccgcatatcaaaggccc
cattacattttggctgacggacaaggggctttttcattaccaatttctaccccccatgca
gcaacctcctttttagaggacatgttgcgcctggagatttttgctattgctgggcctttt
agtcccaaagataataaagcaaaataccaattcatgtgttatttcgatcacatagaattg
gttgagggggtacctagaactatagcaggcgaacagcagttcaactggtgcagttttaga
aatttcaaaatcgatgactggaagtttgagtggccggctcgccttccagatatacttgat
gataagtcagaagtgctcttaaggcaacatcctttatctctgcttatctcatctaccggt
ttttttacgggtagagccatttttgttttccagtggggtttgaatactactgctgggaat
atgaaaggttcattttctgcgcgcctggcctttggcaagggcgttgaggaaattgagcaa
acgtcaacagtgcaaccacttgttggcgcttgtgaagcccgcatacccgtggagtttaag
acttacacgggttatactacttcgggtcctcctggatctatggaaccatacatttacgtg
aggcttacgcaagctaagcttgtggataggctttctgtgaatgttattttacaggaggga
ttttctttctatggacctagtgtcaaacattttaagaaagaagtcggcacgcctagtgcc
accctagggacaaataatcccgttgggcgcccacctgagaacgtcgatacagggggtcct
ggcggccagtatgcagctgccttacaagcagcccagcaagctggaaaaaatcctttcggg
cgtggctaa
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