Viruses: 962130
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Entry
962130 CDS
T40000
Symbol
TRVs1gp1
Name
(RefSeq) Tobacco rattle virus; 194 kDa protein
Virus
12295
Tobacco rattle virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_2
Vmethyltransf
Viral_helicase1
UvrD_C_2
Phage_holin_3_3
Motif
Other DBs
NCBI-GeneID:
962130
NCBI-ProteinID:
NP_620669
RS:
NC_003805
UniProt:
Q9J942
LinkDB
All DBs
Position
NC_003805:203..5326
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AA seq
1707 aa
AA seq
DB search
MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVVVDKVDDMIRERKTKD
PVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKLQALLLLDRVPALQEVD
DIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIGDQARSGKRQMSENELWM
YDQFRKNIAAPNAVRCNNTYHGCTCRGFSDGKKKGAQYAIALHSLYDFKLKDLMATMVEK
KTKVGHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGFEKDPSFSYIHDWEEYKKYL
LGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLSSQEYYRRIYISRWENMVVVP
IFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLTISNVKSYLSSNNWVLFINGAA
VKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAILTETKPITSLTDVLGLISRKMWK
QFANKIAVGGFVGMVGTLIGFYPKKVLTWAKDTPNGPELCYENSHKTKVIVFLSVVYAIG
GITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPCRYYDINDFFSSLYSASESGETVLP
DLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSSVRTSPPSVVGSSRSGLGLLLEDSNV
LTQARVGVSRKVADEEIMEQFLSGLIDTEAEIDEVVPAFSAECERGETSGTKVLCNLLTP
PGFENVLPAVKPLVSKGKTVKRVDYFQVMGGERLPKRPVVSGDDSVDARREFLYYLDAER
VAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGVWDVEMKNWCIRPVVTEHAYVSNPDKRMD
DWSGYLEVAVWERGMLVNDFAVERMSDYVIVCDQTYLCNNRLILDNLSALDLGPVNCSFE
LVDGVPGCGKSTMIVNSANPCVDVVLSTGRAATDDLIERFASKGFPCKLKRRVKTVDSFL
MHCVDGSLTGDVLHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRF
SSLVGKFDIVTEKRETYRSPADVAAVLNKYYTGDVRTHNATANSMTVRKIVSKEQVSLKP
GAQYITFLQSEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGREY
LIVALSRHTQSLVYETVKEDDVSKEIRESAALTKAALARFFVTETVLXRFRSRFDVFRHH
EGPCAVPDSGTITDLEMWYDALFPGNSLRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDK
FAEKETFLKPVIRTAMPDKRKTTQLESLLALQKRNQAAPDLQENVHATVLIEETMKKLKS
VVYDVGKIRADPIVNRAQMERWWRNQSTAVQAKVVADVRELHEIDYSSYMFMIKSDVKPK
TDLTPQFEYSALQTVVYHEKLINSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRV
KFLNTEAAYDFVEIDMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDI
QNGMMAHIWYQQKSGDADTYNANSDRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQF
VDPCPKLATKWNFECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSIKDVQH
LAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTALCTLFR
DENDKELNPAKVDWKKAQRAVSNFYDW
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacggtaacttcaagttgtctcaattgctcaatgtggacgagatgtctgctgag
cagaggagtcatttctttgacttgatgctgactaaacctgattgtgagatcgggcaaatg
atgcaaagagttgttgttgataaagtcgatgacatgattagagaaagaaagactaaagat
ccagtgattgttcatgaagttctttctcagaaggaacagaacaagttaatggaaatttat
cctgaattcaatatcgtgtttaaagacgacaaaaacatggttcatgggtttgcggctgct
gagcgaaaactacaagctttattgcttttagatagagttcctgctctgcaagaggtggat
gacatcggtggtcaatggtcgttttgggtaactagaggtgagaaaaggattcattcctgt
tgtccaaatctagatattcgggatgatcagagagaaatttctcgacagatatttcttact
gctattggtgatcaagctagaagtggtaagagacagatgtcggagaatgagctgtggatg
tatgaccaatttcgtaaaaatattgctgcgcctaacgcggttaggtgcaataatacatat
cacggttgtacatgtaggggtttttctgatggtaagaagaaaggcgcgcagtatgcgata
gctcttcacagcctgtatgacttcaagttgaaagacttgatggctactatggttgagaag
aaaactaaagtgggtcatgctgctatgctttttgctcctgaaagtatgttagtggacgaa
ggtccattaccttctgttgacggttactacatgaagaagaacgggaagatctatttcggt
tttgagaaagatccttccttttcttacattcatgactgggaagagtacaagaagtatcta
ctggggaagccagtgagttaccaagggaatgtgttctacttcgaaccgtggcaggtgaga
ggagacacgatgcttttttcgatctacaggatagctggagttccgaggaggtctctatca
tcgcaagagtactaccgaagaatatatatcagtagatgggaaaacatggttgttgtccca
attttcgatctggtcgaatcaacgcgagagttggtcaagaaagacctgtttgtagagaaa
caattcatggacaagtgtttggattacatagctaggttatctgaccagcagctgaccata
agcaatgttaaatcatatttgagttcaaataattgggtcttattcataaacggggcggcc
gtgaagaacaagcaaagtgtagattctcgagatttacagttgttggctcaaactttgcta
gtgaaggaacaagtggcgagacctgtcatgagggagttgcgtgaagcaattctgactgag
acgaaacctatcacgtcattgactgatgtgctgggtttaatatcaagaaaaatgtggaag
cagtttgctaacaagatcgcagtcggcggattcgttggcatggttggtactctaattgga
ttctatccaaagaaggtactaacctgggcgaaggacacaccaaatggtccagaactatgt
tacgagaactcgcacaaaaccaaggtgatagtatttctgagtgttgtgtatgccattgga
ggaatcacgcttatgcgtcgagacatccgagatggactggtgaaaaaactatgtgatatg
tttgatatcaaacggggggcccatgtcttagacgttgagaatccgtgccgctattatgat
atcaacgatttctttagcagtctgtattcggcatctgagtccggtgagaccgttttacca
gatttatccgaggtaaaagccaagtctgataagttattgcagcagaagaaagaaatcgct
gacgagtttctaagtgcaaaattctctaactattctggcagttcggtgagaacttctcca
ccatcggtggtcggttcatctcgaagcggactgggtctgttgttggaagacagtaacgtg
ctgacccaagctagagttggagtttcaagaaaggtagccgatgaggagatcatggagcag
tttctgagtggtcttattgacactgaagcagaaattgacgaggttgttccagccttttca
gctgaatgtgaaagaggggaaacaagcggtacaaaggtgttgtgtaaccttttaacgcca
ccaggatttgagaacgtgttgccagctgtcaaacctttggtcagcaaaggaaaaacggtc
aaacgtgtcgattacttccaagtgatgggaggtgagagattaccaaaaaggccggttgtc
agtggagacgattctgtggacgctagaagagagtttctgtactacttagatgcggagaga
gtcgctcaaaatgatgaaattatgtctctgtatcgtgactattcgagaggagttattcga
actggaggtcagaattacccgcacggactgggagtgtgggatgtggagatgaagaactgg
tgcatacgtccagtggtcactgaacatgcttatgtgtccaacccagacaaacgtatggat
gattggtcgggatacttagaagtggctgtttgggaacgaggtatgttggtcaacgacttc
gcggtcgaaaggatgagtgattatgtcatagtttgcgatcagacgtatctttgcaataac
aggttgatcttggacaatttaagtgccctggatctaggaccagttaactgttcttttgaa
ttagttgacggtgtacctggttgtggtaagtcgacaatgattgtcaactcagctaatcct
tgtgtcgatgtggttctctctactgggagagcagcaaccgacgacttgatcgagagattc
gcgagcaaaggttttccatgcaaattgaaaaggagagtgaagacggttgattcttttttg
atgcattgtgttgatggttctttaaccggagacgtgttgcatttcgatgaagctctcatg
gcccatgctggtatggtgtacttttgcgctcagatagctggtgctaaacgatgtatctgt
caaggagatcagaatcaaatttctttcaagcctagggtatctcaagttgatttgaggttt
tctagtctggtcggaaagtttgacattgttacagaaaaaagagaaacttacagaagtcca
gcagatgtggctgccgtattgaacaagtactatactggagatgtcagaacacataacgcg
actgctaattcgatgacggtgaggaagattgtgtctaaagaacaggtttctttgaagcct
ggtgctcagtacataactttccttcagtctgagaagaaggagttggtaaatttgttggca
ttgaggaaagtggcagctaaagtgagtacagtacacgagtcgcaaggagagacattcaaa
gatgtagtcctagtcaggacgaaacctacggatgactcaatcgctagaggtcgggagtac
ttaatcgtggcgttgtcgcgtcacacacaatcacttgtgtatgaaactgtgaaagaggac
gatgtaagcaaagagatcagggaaagtgccgcgcttacgaaggcggctttggcaagattt
tttgttactgagaccgtcttatgacggtttcggtctaggtttgatgtttttagacatcat
gaagggccttgcgccgttccagattcaggtacgattacggacttggagatgtggtacgac
gctttgtttccgggaaattcgttaagagactcaagcctagacgggtatttggtggcaacg
actgattgcaatttgcgattagacaatgttacgatcaaaagtggaaactggaaagacaag
tttgctgaaaaagaaacgtttctgaaaccggttattcgtactgctatgcctgacaaaagg
aagactactcagttggagagtttgttagcgttgcagaaaaggaaccaagcggcacccgat
ctacaagaaaatgtgcacgcaacagttctaatcgaagagacgatgaagaagttgaaatct
gttgtctacgatgtgggaaaaattcgggctgatcctattgtcaatagagctcaaatggag
agatggtggagaaatcaaagcacagcggtacaggctaaggtagtagcagatgtgagagag
ttacatgaaatagactattcgtcttacatgtttatgatcaaatctgacgtgaaacctaag
actgatttaacaccgcaatttgaatactccgctctacagactgttgtgtatcacgagaag
ttgatcaactcgttgttcggtccaattttcaaagaaattaatgaacgcaagttggatgct
atgcaaccacattttgtgttcaacacgagaatgacatcgagtgatttaaacgatcgagtg
aagttcttaaatacggaagcggcttacgactttgttgagatagacatgtctaaattcgac
aagtcggcaaatcgcttccatttacaactgcagctggagatttacaggttatttgggcta
gatgagtgggcggccttcctttgggaggtgtcgcacactcaaactactgtgagagatatt
caaaatggtatgatggcgcatatttggtaccaacaaaagagtggagatgctgatacttat
aatgcaaattcagatagaacactgtgtgcactcttgtctgaattaccattggagaaagca
gtcatggttacatatggaggagatgactcactgattgcgtttcctagaggaacgcagttt
gttgatccgtgtccaaagttggctactaagtggaatttcgagtgcaagatttttaagtac
gatgtcccaatgttttgtgggaagttcttgcttaagacgtcatcgtgttacgagttcgtg
ccagatccggtaaaagttctgacgaagttggggaaaaagagtataaaggatgtgcaacat
ttagccgagatctacatctcgctgaatgattccaatagagctcttgggaactacatggtg
gtatccaaactgtccgagtctgtttcagaccggtatttgtacaaaggtgattctgttcat
gcgctttgtgcgctatggaagcatattaagagttttacagctctgtgtacattattccga
gacgaaaacgataaggaattgaacccggctaaggttgattggaagaaggcacagagagct
gtgtcaaacttttacgactggtaa
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integrated database retrieval system
