Viruses: 963857
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Entry
963857 CDS
T40000
Symbol
RBDVs1gp1
Name
(RefSeq) Raspberry bushy dwarf virus; non-structural polyprotein
Virus
12451
Raspberry bushy dwarf virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_2
Vmethyltransf
Viral_helicase1
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
963857
NCBI-ProteinID:
NP_620465
RS:
NC_003739
UniProt:
Q05983
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All DBs
Position
NC_003739:104..5188
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AA seq
1694 aa
AA seq
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MECLDFSKLWFSTAAGLQQRCYYDCVAWECLGDDDLQIFISGLNRLIESVAVSCTGDEDL
DFVVDSCNEFVTGRDLKSFFAADLPVREVSSVGCISHFIPGSVSGLNVSDLLDNQLYGCS
VFSSDFESKLRDIRDAALSDAASGVSQLVSCHFEKDVRHLLAENANSVKIPVPQKLSDDD
MRILRDHFPRYELKFTQNVDGPHNMAAAHRLLETHDLLSNFPADAPILDIGGNWFSHFRY
GRSNVHSCCPMLDLRDNERHTHRLTMTESLMSSLRHRYAGTIDLDPDAHLSRKVSDSMKE
FYKRWAVHPKDLIRLYAGIRDGNSSLYCHHKFGVSWNDVLWESERNNCLTVPEPECPFKA
KYAIMVHSGYDLPLKELIGGMVQHGVVELHGTMIADPAMLVATSGYIPALRCNWEKSKGQ
IWFSFRDDSTMGYRHDWEVYSKYLTSTVVSCGKHFYVMERDKYRHGVLFYSIIKCSGSLR
KGDHTFFHNAWFHEMYDKYIMKVPLVKVKDLTGDEGSVECSWREVVMSRKLVDRVIEVCL
RGVKPINFGNCDDAVHMDNLRIIQNHLLSHSQTLVLNGSTIIREEAIPFKDFSPVSVTIY
FEILLTRYKESLSLAWFHAGLGPDFKLGSWVSSLKRVFYRILGFPANLLKYVLNALFRCR
DKVSDMEFVKPAVEKLTVLENTYIGKSLMGDCPTLKEYDDSAFFNILENVGNELFNNSST
DSGKPETPEVTMTGNPNAVIAEAISYCRAEVDRIGKKCERILHAYQATGNCGGYLNDTDN
VGVFDKMTSWVQKPKEFDHEFGWDGSSFIKLSWFGKIPDFVGRYLVVTDGTRVTTNLKFS
RQYATIPATVTPTIKLVDGVTGCGKTTEIVRRYRPGILILSVCKANVDEIRRKLAAVDSK
FIRTVDSYLLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNR
LADFPLKYNSVEDVGLNFDREIRSTTYRCPQDITLSLQKMYKTKPIKTVSTVESSITIKP
IKSEFEIPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVVYF
RLTRTDNDLYTKRKLPYHLVAISRHTDKIVYCTTKPEDSSDFSLSALKNTIKTSRDLTQE
ASGSESSYAVVFESNSEVTATKPEVCENVRKAAEMNFPVSSDALYQKEVPIYGAIPDPKG
KASYNPGSVIRAIEELTPGNTSIDTDALDELVEVGPMSLQVGSIRWDVSKISPRLFTNNK
FAVPHLPTGALLRRNTSSRQVGLAIEKRNANVMNSQKYFDLENLANKAVERFFDFFIDME
KFSKLPTGVLGSSAEQIQTYQNKTGNKVTDPVCVALSPIQKYKHMIKRDVKFNLTDGAQS
EYTKAATITYHQPEITQVATAIFGQFKTRLLACRNKFLNIPLEHDNDLSGYLTKYHLGSE
NNTFTEIDFSKFDKSQGEIHQLIQDLILIKFGCDPEFVALWSTAHRSSSIFDQNVGIGFK
TDFQRRTGDAFTFLGNSLVTAAMLAFVISDPDREKIRYMLVGGDDSLICSYGPIQVPLEP
LGDIFNMSCKLVQPACPYFASRYLIRRGDEILCVPDPYKLLVKLGRKDVPDNQASLCEIR
TGLADSAKYIFDDIVKQKLAILVQVRYNKAAPSLYDALCTVHWALSSNTNFSKFYTVTNT
SNEVRRNRRGVKIT
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcttagatttctccaagctgtggttttctacggccgctggtctccagcaacgg
tgctattatgactgtgttgcgtgggaatgcctaggtgatgatgatctacagatcttcatt
tctggcctgaaccgcctcatagagtccgttgctgtttcttgtaccggcgacgaagatttg
gacttcgtcgtggactcatgtaatgagttcgttacggggagagacttgaagtctttcttc
gctgctgacctccctgttagagaggtcagttctgtgggatgtatatctcactttattcca
ggttcggtttctggactgaatgtctcggacttgctggataaccagttgtatggttgttct
gtattttcctccgatttcgaatcgaagctgagggatatacgggatgcggccctttctgat
gccgcgtcgggtgtttcgcaactagttagttgccattttgaaaaagatgttagacacctc
ttggcggagaatgctaattccgtcaagatccctgtacctcagaaactcagtgatgacgat
atgaggattttaagggatcactttcctcgttatgagttgaagttcactcagaacgtggac
ggcccgcacaatatggccgccgctcataggttgttggagactcatgatttgttgtccaac
ttccccgcggatgcacctatcttagatataggtggcaattggttttctcatttccgttat
gggaggtccaatgttcatagttgttgccctatgctagatttaagggacaatgaacgacat
actcatcgtttaacgatgactgagagtctaatgtccagcttgcgccatcgctatgctggt
acaattgatctcgatcccgacgctcacctttcaaggaaggtgtctgactctatgaaagag
ttttataagcgctgggctgtacaccctaaagatttaattaggttgtacgccggcatacgt
gacggcaactcatcgctctattgtcaccataaatttggtgtgtcatggaacgatgtttta
tgggagtcggagaggaataactgcctcactgtcccggagcctgagtgcccttttaaagct
aagtatgctataatggtgcattccggttatgacctacctctaaaggaacttattggaggc
atggtacaacatggcgtggtcgagttgcatgggactatgattgctgatcctgctatgtta
gtcgctacaagtggctatatccctgcactgcgttgtaactgggaaaaatccaaaggtcaa
atttggttttctttccgagatgacagcacgatgggttacaggcatgactgggaggtgtac
tctaagtatttgacttccacagtcgtctcttgcggtaagcacttttacgtgatggaaaga
gacaagtacagacacggtgtgttattttatagcataattaagtgttctggatcccttcgt
aaaggggatcacactttttttcataatgcctggtttcacgaaatgtacgataagtacatt
atgaaagtccccttggtaaaggtaaaggacttaaccggtgatgaaggttccgtcgagtgt
tcttggcgtgaagttgtgatgtctaggaaacttgtggatagggtcattgaggtttgcctt
aggggtgtaaaacccattaactttggaaactgcgacgacgctgttcacatggacaatctc
cggatcatccagaaccatctgctgagtcattcgcaaacactggttttaaatggtagtacc
attattagggaggaggcgataccttttaaggatttctctcctgtatccgtgaccatatat
tttgaaatattgttgacgagatacaaggaatccctatctttggcctggtttcatgctggt
ctgggtcccgactttaagttgggctcttgggtatcctctttaaagagggtgttctaccgg
attctaggtttcccggctaatcttctaaagtacgttttaaacgcactttttagatgccgt
gacaaggtttcagacatggagtttgtgaaacccgctgtcgaaaaattgacagtgttagag
aatacctatatagggaaatctctaatgggcgattgtcctactctaaaagagtatgatgat
tcggccttcttcaatatattggagaatgtgggcaatgagttgtttaacaactctagtacc
gattccggaaaaccggaaacacccgaagtgaccatgaccggtaatcccaatgcagtaata
gctgaggctatcagctactgtcgagctgaggtcgatagaattgggaagaagtgtgagaga
attctccatgcttaccaggccactgggaattgcggcgggtacctaaacgatactgacaat
gtaggtgtgttcgataagatgacgtcctgggtacaaaaacccaaggagttcgatcacgaa
tttggatgggatggctcctcctttattaaattgtcttggtttgggaaaataccggacttt
gtaggaaggtatttagtagtgactgacgggacacgtgtaacgacaaatttgaaattttct
cgtcagtatgctactattccagcaaccgtaacacccaccattaaattggttgatggtgtt
actggatgcgggaaaacgactgagatcgttaggcgttatcgtcctgggattttaatccta
agtgtatgtaaggctaacgtggatgagattagaagaaaattagcggccgtggactcgaag
ttcattagaaccgttgattcttatcttctcagcccgagtgtgaccggaagctgtgatgaa
ctcttcatagatgagtatggtctctcgcatccgggcattctgttactggctatccatatt
agcggaatccgaaaggtcactctctttggtgactctgaacagattcctttttgcaatcgc
cttgctgattttcctctaaaatacaactccgttgaagacgtgggattgaactttgacagg
gaaatcaggtccactacttatagatgccctcaggacatcactttgtctttacagaaaatg
tataagacaaaaccgataaaaacggtatcgactgttgaaagttcgataaccatcaaacca
ataaagagcgaatttgaaattcctctacccaatgcgtttgatggtcctgtgttgtacata
tgcatgactaagcatgatgaaagccttttaaagttgcgttgggccaaagagaacatttct
agcgaagttcgaacggtgcacgcagctcaaggtttgagttataagaacgtcgtgtatttc
aggttaactcgtactgataacgatttgtataccaagagaaaactaccatatcatttggtg
gcaatttctaggcatactgataaaatcgtttactgtactacgaaacctgaagactcatct
gatttttctctatctgctctaaaaaataccatcaaaacctctcgggatttaacccaggag
gctagtggttcagagagctcttatgctgttgtcttcgaatcaaattcggaggtaaccgca
accaaacctgaggtttgtgaaaatgttagaaaagcagctgagatgaattttcccgtttcc
tctgacgctttatatcagaaggaagtgcccatttatggtgcaatacccgacccgaaggga
aaagcaagttacaatccgggtagtgttatcagggccatagaagaattgaccccaggtaac
accagcatagatactgatgctttggacgaactagttgaagttggtcctatgagtttacaa
gttggtagtataagatgggatgtctctaagatatcacctcgcttgtttactaacaacaaa
ttcgcagttccgcacctaccgactggagccttgttaaggcgtaacacgagcagtcgtcag
gttggattggctatagaaaagcgaaacgctaatgtcatgaatagccaaaaatattttgat
ctggaaaatttagctaataaggcggtagagagatttttcgatttctttatagatatggag
aaattctcaaaactgccaactggagtcttaggctcgagtgctgaacagatacaaacgtac
cagaataaaactggtaataaggtgacggacccagtctgtgttgccttatccccaattcaa
aaatacaaacatatgattaagagggatgtcaaattcaatttgactgatggtgctcaaagt
gagtatactaaagctgccaccattacttatcatcaaccagagataactcaggttgctact
gccatttttggtcagtttaaaactagactgttggcttgtagaaataagttcttaaatata
cctcttgaacatgataatgatttgagcggatatttaaccaaatatcatttggggagtgaa
aataacactttcactgaaattgacttttctaaattcgataaaagtcaaggggaaatccat
caactcattcaggatttaatcctgataaagttcggttgtgatcccgagtttgtagcctta
tggtctaccgcccacagaagttcttctattttcgatcaaaacgttggaattggttttaaa
actgatttccaaagaagaacgggcgatgcttttacttttctgggaaactctttggtaact
gccgccatgctggcgtttgtcatcagtgacccagatagggagaagattaggtacatgttg
gtgggtggggacgattctttgatctgctcctacggtccaatacaagtacctttggaacca
ttgggtgacatatttaatatgtcttgcaagttggtacaaccagcttgtccttatttcgcg
tctcgctacttgattaggagaggtgacgaaattttgtgtgttcccgacccctacaaactt
ttggtgaagttggggaggaaagacgtcccggacaatcaagcatcattatgcgagatacgt
accggattggcagatagtgccaaatatatctttgatgatattgtgaaacagaagttggct
attcttgtacaggtgcgctataataaagctgcacctagtttatatgatgccctttgcact
gtgcattgggcattatcttctaataccaatttctcgaagttttacactgttactaacact
tccaatgaagtgcgaaggaacagaagaggtgttaagattacttaa
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