Viruses: 963865
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Entry
963865 CDS
T40000
Symbol
RNA1, BaMMVs1gp1
Name
(RefSeq) Barley mild mosaic virus; RNA1 polyprotein
Virus
12466
Barley mild mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
Poty_PP
Peptidase_C4
Poty_coat
Helicase_C
DEAD
AAA_11
Motif
Other DBs
NCBI-GeneID:
963865
NCBI-ProteinID:
NP_604491
RS:
NC_003483
UniProt:
O55459
LinkDB
All DBs
Position
NC_003483:149..6925
Genome browser
AA seq
2258 aa
AA seq
DB search
MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLVLSPAHIAKLNKLLTE
ESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHMMKALDACLDESFSENA
AALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREYGLSTTYFEKLSNFGGHIRSF
VWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLCCCWSPARWCFNSAVFIWS
LCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCVHLKNRKGPILQASQKDKRL
IGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDNRGFATPALDNLTDFTTILQS
GTSSDDLKIVQDTLAVVLQVDEEDATQDDAIYDSDGLQTFKQWVSHNQLAGMHLARPLQY
PCSNTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGKSTRLPTAYANCLKGLAGRKKNV
LVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGDKTIQVMTYGSALAAWKVDNKFLS
QFDAVFLDESHLITTHALVFESICQEVTNVRKFYVSATPRDGKKCPEAVRRYEIKTVKTE
CSSVDTFVRSQEKENTLYVLNHDTVLVFLAGKAECDRAASNWNKLYSTNMYAYSLTGDNF
TIAYEKIVTRMLTERTIVFCTNILETGVTLNVDCVVDFGFTMRPELDLVDKSLTLMRRRV
TENERAQRIGRAGRLRTGYAICIGNPETRHDLVPPETLYEAALLSFVHGVQFYINEHFEN
AWIEGVTKSQASVMTQFKLSPFLMRDIVRDDGAIPLSLHKILKDYTHRNTDLIGTKLSVM
SHIYNSWPLYRTVHQSIFRGDSNVPQTLRYARVPFNVSTAHDFPWEDFAQACLEFQPRVL
QVFSDNSSTSRIINLQIGKMHIVNSMEEVKINIHSYQRSAENLRSVKDSFESSIFRTKLL
RGNPTGKITKRIETLLDNVRVLQQVHAKLEMIAYSGGEKVNMDKKSVDELNEIVELQSKN
SLTAEELARILHLTKPTSTFFNLFAERGRQMLVTLLVMVAASLMYLVFWVSPRKQDDITI
EGKGRAYNRDKRMGYDSYEEDEVRNKINKKFKERSTRFSNDSKPETNSKYRNLKQEFVNF
YDLKTDANVLQAVFTAMDGAVLLQTESPMADIGRVNRLLQDHFGDSESRAVHEGLNTMVK
CHLTMKDGRQFELDMEQHDPEYVAKLGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLE
GMTMKPMSSFTIDSAKMVGFIKTAKDTLNCILYGDWIIAPAHIQQGEGDITFIFQHIQFT
TTTERLASYGIRQFKGLDLVVIRRPQQIRAVKKDMRASILDTPTEIQMLYLSVKGGKYQV
STSAVCFPHYNNRWGHVISTAEGMCGCIVFDPTTNHIVGIHVSYNDTRRRNEFQAFTSDV
LTTINAPGHEIPFSPWVFDWKFCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQEIKP
AMLRSTESFSREFPNTQFKLIGEVKKGLIDKHTITGENPYFLEFLDTFKPYQWVQAFMDE
YAPSILAYDAYFKDLKKYDRPPHANAFCQNTLTKAKNKMINILEEAGMGRTLVRTTEQVL
LDMAWTTSGGPLYHGKKIDIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSS
QKILERKTRVFTAAPITSLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKL
NKPGWTHGSGDGSRFDSSIDGFLFDVIKDIRKHFMDAEHHKELDTIYEEIVNTKICLANG
LIIQKNCGNNSGQPSTVVDNTLALMTAFLYAYVRLTGDHAFELMDENFVFVCNGDDNKFA
MSPSFMTKFGCDFSPFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIV
AILQWSRAGGVLHAYLSGIAALFESFNTPKLFNLVHTYLLWLITEHEEELFSMMELRDMF
MPLPTKEQIALLHYVGTEPIVEETFLQAGHEEPDPIVPPASDTDLTNMAAAPPDNRRSRA
VIPRGTSDWSMPEPTMRTLGFKSKIKIETLADVPEGYMNTFASVATESQRRKWEEATRGD
FGITDDEKWEKLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKIS
TLRRIFRCYSIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKL
AAIGVGTSNSLLTSEQTNMRTTETRRRNDYDGHEALLR
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttcattcctgaagtgttctaccagaaccaggttcagagtcttaagaaaatt
cttaaatcctggaaacgcgacacttctatttacgcgtatcttgctcgcgagcaagaggtc
ctagccttccttgtactgagtcccgcacacattgccaaattgaacaaactactcactgag
gagtctgcacgatgtgccctgcttgcccagaactgtgaaaccatcgaagctctggccgtt
gttcggcaagccctgcagggtgtcacgctacactttggtgataatggcatggagaaaggc
tggttgcatatgatgaaagcacttgatgcatgtcttgacgaaagcttcagcgagaacgcc
gccgcactcaagaaaagcattcaggcggttggtcacaagctcatcgcagcaaaaaaccgc
atcgaaggctgcgagcgatctgtaaatcaccttacaacgtttcaatttgctcgcgaatat
ggcttaagtactacatacttcgaaaaattatccaatttcggtgggcatattcgaagtttt
gtgtggtccagcgactcaggagaaattttcccaaaactaaaaagatcatcacgtacgagg
cgcatctcgacattcacgagctactactggggtgagttctggtgcaactgcatctggttc
ctctgctgctgttggtctcccgcgcgctggtgttttaattctgcagttttcatatggagt
ctatgtggcgttttaaacttatctatgattgttctacagtttgctcttaagcgtcatttt
ggtagatactattttcgatacataatgtctggtgtcctagctatttgcgccgtgtgttgt
gttcatcttaaaaacagaaaagggcctatattgcaagcctcccaaaaagacaagcgtctc
atcggaattttagctttctgcattactgttatatacatgtttgatgttgatctagccgac
tcacttagcaataatcttcacaagatctctcgccttgtgaatcttttccttgacgataac
cgcggattcgcaacacccgctctcgacaatctaacggacttcacaacaattcttcaaagt
ggaacatcaagtgacgacctaaagattgtccaggatacgttggctgtggttttacaagtc
gacgaagaggacgcaactcaggatgacgcaatatatgattccgatggacttcaaactttc
aagcaatgggtctctcataaccaactagccggaatgcatcttgcacgcccgttacaatac
ccgtgctcgaacacctatggcctgaccgcagataacgtcgcagaactagcaactagcatg
gcacaggaggcaaagcagtggtcacaagttgttggacacactggttccgggaagtccaca
cgactaccaactgcatacgccaactgtttgaaaggcttagccgggcgaaagaaaaacgtt
ctcgtttgcgaacccactagagctgcaaccgtcaatgtaaccagcggcatttcacagaat
tttggtaggcttgtttacggacggcatgaaggctggagtaaccttggcgacaaaacaata
caagtcatgacatatggttctgcactcgcagcgtggaaagtcgacaacaaattcctaagc
cagtttgacgcagtgtttctcgacgaatctcacctcatcaccacgcacgcccttgtcttt
gagagcatctgccaggaggttacaaacgtccgcaagttctatgtgtcagccacaccccgc
gatggcaagaagtgtccagaagccgtgcgtaggtatgaaatcaagactgtgaaaaccgag
tgcagcagcgtcgacactttcgttcgaagccaggagaaggaaaacacgctttacgttctc
aatcacgacaccgtgctcgtttttctcgctgggaaggctgagtgtgatagagcagcaagc
aactggaacaagctgtactcaaccaacatgtacgcgtactccctaacaggtgacaatttc
acaatcgcatatgagaaaattgtcacacgcatgctaactgagcgcaccatcgtattctgc
acaaatatcctggaaaccggtgtcaccctcaacgtggactgcgttgttgactttggattc
accatgcgtcctgaacttgatcttgttgacaaatcgctaaccttgatgcgacgccgagtt
accgagaacgagcgtgcacaacgcatcgggcgtgcaggaaggcttagaacagggtacgca
atctgcatcggcaatcccgaaacgcgccacgatctggtgccaccagaaaccctctacgag
gcagcccttcttagcttcgttcacggcgtgcaattctacatcaatgagcacttcgagaac
gcctggattgagggcgtcacaaagtctcaagcctctgtgatgacgcagtttaagctttcc
cccttcctcatgcgtgacattgttcgtgatgacggtgcaataccactatcactccacaag
atactcaaggactacacgcaccgcaacactgatctgataggaacaaaactctccgtcatg
tcgcatatctacaactcgtggcctctctaccggacagtgcaccaatccatttttcgtgga
gattctaatgttccgcaaacgctcagatacgcacgcgttcctttcaacgtcagcactgcc
catgattttccatgggaagatttcgcacaggcatgccttgagttccagccacgtgttctt
caggtcttcagtgacaacagcagcacttcgcgcataatcaacctacagattggcaagatg
cacatcgtcaattccatggaagaagtcaagataaacatacacagctaccagcgctctgca
gaaaacctacgctcagtcaaagacagctttgagagctcgatctttcgaacaaaactgctt
cgtgggaacccaactggaaagataaccaagcgcattgagactctccttgataacgtgcgg
gtgctacaacaggtgcacgcaaaactagagatgattgcatactcaggtggagagaaagtt
aacatggacaagaaatcagttgacgaactcaatgagatcgtcgaactccagagcaagaat
tcactcactgccgaagaactagcacgcatattgcaccttacgaagcccacctccactttc
ttcaatctttttgctgaacgcggccgacaaatgctcgtcactctcctggtcatggttgcc
gcctcgctcatgtatcttgttttctgggtttccccaaggaaacaagacgacatcaccatt
gaaggaaaaggtagagcatacaatcgtgacaagcgcatggggtacgactcctacgaagag
gacgaggttcgcaacaagatcaacaagaagttcaaagaacgcagcacaaggttctccaac
gattccaaaccggaaacaaactcaaaataccggaatctgaagcaagagtttgttaatttc
tatgatcttaagactgatgcgaacgtactacaagctgtgttcactgcaatggacggagcc
gttcttcttcaaaccgaatcgccaatggcagatattggccgtgtcaatagactgctgcaa
gaccactttggagatagtgagagccgagccgtgcatgaaggtctcaacaccatggttaag
tgccacttaactatgaaagatggaagacagtttgagctcgacatggaacagcatgatccc
gagtatgttgccaaacttggaggtgaagttggtttcagaatgaacagagatgatctacgc
caagttggtgccacacggtacatcaacccaagagcacaaacatccgcagcgactctcgaa
ggcatgaccatgaaacccatgagttctttcaccattgatagcgcaaagatggttggcttc
atcaagactgcaaaagacacactcaactgcatcctctatggcgactggatcatagctcct
gcgcacatacaacagggcgaaggggacataacattcatctttcagcacatacagttcacg
accacaactgagcgcttagccagctacggcatccgacaatttaaaggccttgaccttgtt
gtcatccgacgcccccaacagatacgcgcggttaagaaggacatgcgcgctagcattctt
gacacacctactgagatacagatgctatatttgtcagtaaaaggtggcaagtaccaagtg
tccacgtccgctgtgtgctttccacactacaacaaccgatggggacatgttatttcaacg
gctgaaggtatgtgcggctgcattgtatttgaccccaccactaatcacattgttggaatc
cacgtctcctacaacgacacgcgcagaagaaacgagtttcaggctttcacgagcgacgtt
ctgacaacgattaatgcgcctggacacgaaatacctttcagcccgtgggtctttgactgg
aagttttgcgggtacacgacaaaaccacggaacatgcaaagcgcaccgagcacgcttgag
agactcaacatcaacgccacaggttttggtttcaagctcaacgcacaggagatcaaacct
gccatgctccgctccacagagtcgttctccagggagtttccaaacacacagttcaaactt
atcggcgaagtgaagaaaggactcatcgacaaacacacgattacaggagagaatccctac
ttccttgaattcctggacacattcaaaccatatcaatgggtacaggccttcatggacgag
tacgcaccctccatccttgcctatgatgcgtatttcaaggacttgaagaaatacgatagg
ccaccacatgcaaatgctttctgccagaacacattaaccaaagctaaaaacaagatgatc
aacattctcgaagaggcaggcatgggaaggaccctagtacgaaccaccgagcaagtcttg
cttgacatggcgtggaccacctctggtggaccattataccatggtaagaagattgacatt
gtgcaacacttgtctgatgacgagcttgtgcaattcagtgaagcctgccaacaggctctc
atcactggaacgctggatggagtctggaacggatcactcaaagccgaactgcgctcttcg
cagaaaatccttgaacggaaaactcgtgttttcactgctgcccccatcacaagcctaatc
gcaatgaaatattacgtggatgatttcaacaagcagttctacaaaacccacctcaaagca
ccacacacagtcggcatcaacaagtttaaccgcggatggcagaatctctatgagaagctc
aacaaacctgggtggacgcatgggagcggggacggctccaggttcgatagctctattgac
ggattcctttttgacgtcatcaaagacatccggaagcacttcatggacgcagaacaccac
aaggagctagacacaatttatgaagagattgtcaacacaaaaatatgtctagcaaatggt
ctcatcatccaaaagaactgtgggaacaacagcgggcagccaagtactgttgtagacaac
acacttgcactcatgactgctttcctctacgcatacgtccggctcactggagaccacgcc
ttcgaactcatggacgaaaactttgttttcgtttgcaatggtgacgacaacaagttcgct
atgtcacctagcttcatgacaaagtttggatgcgacttctcaccattcctttctgagcta
gggctaacctacgaattcgacgaagccactgaagacatttgtgaaaacccctacatgtcc
ttgacgatggtccgcacctcgtttgggatcggtttctccctctccatagagcgcatcgtt
gcaatcttgcaatggagccgcgctggcggagtcctgcatgcctacctctctggcattgcc
gctcttttcgaatccttcaacacacccaagctctttaatctcgtgcacacatacctcctc
tggctcatcacagagcacgaggaggaactcttctctatgatggaactcagagacatgttc
atgcccctgcccactaaggaacagatagccttgttgcactacgtcgggactgagcccatc
gtggaggagactttcctgcaagcagggcatgaggaaccagatcccatagttccaccagcc
tccgacaccgatctgacaaacatggctgcagcaccaccggacaacagaaggtcacgtgcc
gtcatcccccgtggcactagtgattggagcatgcccgaacccacaatgcgaacactgggt
tttaagtccaagatcaaaatcgaaacacttgctgatgtccccgaagggtatatgaatacc
tttgcgtccgttgcaactgagtcgcaacgtaggaagtgggaagaggccacgcgtggcgat
tttggcattaccgacgacgagaaatgggaaaaattgctcattgctgcctgtatatacttt
gcagacaatggcacctcaccaaattttgatgaggaactcactatggaagttaatggcggt
ctcaactccatcaaagagtatcccgttcgccctttcgtcgtcagggccaagaagatctcc
acactgcgcaggatcttccgctgttactccatcgaaacgaaactgatgtttgtaaagctg
aggcgcgtgccgcattgggccataaagcacggatgccttgatgaaatcgtctttgatttc
atgatccccgaccagttcacctccaggactgcactggaaacactgaagcagaccaagctt
gccgccattggtgttggcacaagcaattctcttctcacctctgagcagacgaacatgagg
accactgaaacccggaggcgcaatgactacgatggtcacgaggcgcttctccggtag
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integrated database retrieval system
