Viruses: 9725463
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Entry
9725463 CDS
T40000
Symbol
ToChSV_s1_gp1
Name
(RefSeq) Tomato chocolate spot virus; polyprotein
Virus
661101
Tomato chocolate spot virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
9725463
NCBI-ProteinID:
YP_003097229
RS:
NC_013075
UniProt:
C7EXM2
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All DBs
Position
NC_013075:139..6606
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AA seq
2155 aa
AA seq
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MAFSKFYNKRVSDQMESSTSSSSSFFGELTGSIAKFSRAIGNITSVSQKISDHLDELKPS
ISDASTSFVSTCSTVNKVLDKINALIEPFLKAYSFLATMYKSIKDMVLKLFEGLSSKIKL
GFSWVLKKSEDVDVVVYGFLVFAISMLVLLYVCPSNIVEGVSSTVKNIFFIVGNMFSSLY
NLDWFPKWAERFTLVAQASMLPGESVSHTPTSQLMSTILAFGISTLVFIAVPGRPNGLNN
PLSKILYSTGSGAQQCNQLFTLYRNMKDCTSQAFSWVLEIIVDMFGFKNPILSAISATLA
TDLFEWMKEVDAVCDPATRLENFANKAFPTKLNHLREQALKISAYIATHPVAAFMSHRVS
AAINQLEKVYAESCRHMGVGQYRIEPFMVQWFGASGCGKSTSMRLFINDVLDRMGEPKLN
RLYAVSKRDAYWSNYAHQTAILMDDMGALRDGAGQCQDIKDLIDIKSTQPAPLPMAAVED
KGRHFTSKYIFATSNLISAPAQCGLTYPDAFERKRDILVECIKDGKFSTEDPTGHLKFNI
VESRRPHAITHRGLSYSDLLDYVVAKCQVHAEVSKQLFEAESGIASKTAQVQVSSKEVVA
SVDGARLKTKQDNPILSPVVIDDNDRIIYSRELTVEALKFAYQGSMDPEELFPHDHHKQA
LFDSLDADHKQVFLKWRTDMLYRGADAEQYRWLVQNIPDDYIMHFKSFIYASTICEKKLS
VQTEMRTGFAHKCIDADVDTLICIEQMPPFVQFLYTAFVRYWCNKVSKQPSESWVKVCYH
KIIDYIQEAWWNMPYALRLLIKAGLIIMALNGVFGCITAFLACWQSNTFPSASGRGGVTN
ESNSISSKKNFGKNKLKNMLVGQGAQSLTQDWASEDGFVNHSLKKNLVVLRLGEGVYFRG
TYVCSGWIMTVAHAFHNVRDGTPFTIVHPNSRSKVQYNAREAKVIEGQDIILLRVGDPDG
PKPDIRKHFPRKDEVCFTKGSQGLCCRAVASTDPRNGNLELLKMPVMMSKGYTVKVEYEL
DTSSFKICSQNSYEYHMNGENGDCGTLLLLPSVQNKQPMIVGIHCASYDGIAAERGFISS
NATAIYREQLEDLPVGPVKAAMVRCDILKSIRSREAALFEENQVSFLGTVPQELAATVPH
KSTLRRSQLFEAFGPAETAPSILTVNDKRGEGFDPYVAGVMKYNETAHNFDEGIAKMAFE
TLKCALLPVMKNQKVPGGMPCARDEDVVLNGIDGWDYYDGMELSTSCGYPFNKMGMGLNK
REFVETTGVGDRVELKRSTPVFEAWEELDVQVRKGVHVDLFTTQCAKDERLPLEKIYGKR
KTRLFEILPFHYNMLVRKYFLDFSATLMSSHNAIPCKVGIDPTSSEWSLLANGFRAVSNI
GFSADYSSFDGRAPVFIFQWFCDLVDDYYGSATGSPESNARHALLMMASCHYTLCEDKVF
RLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGD
DNLVAVPLHLQWYSLPNIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRH
ALGYHMAPLKWVSIIEPMYWIRPAPGCPDAQAMMENVETGIREAFHHGQVAYEKLVADVQ
EALNERGFRATIFPSYLEVEQEWIAKVTGNADVMTICEMARAAISYTPLEPGSKVENFER
DLNWFAPNIGFCSARTASHYSWDDETIVVNCTGAKKSNWVRGPANWKDFEGQMWPYTISA
ILDAQRSKAAEGKAIVNTIFVCGNGYAVGPVCAALMALATRQFCAEDIIVRLRTIANVLD
LNTYPGGCAQYFLQCVPHGDKVAQAGISLHSSFAHQGFELGNFRIIRGDISKTTALRMPY
VVGPNGGWGNFSTQELTTLLSYLGKGYAELVSRNTKLTLYFKNMSQEDVQQLITFVKLQG
YYPSEVTVGQLKNFVDAEQLVSKRKEGTLHRVVFTKRVLGSTWKLNGDNIMSTLSAESLF
PGPLSASVLKVLLSKHTRNMSCQNIGLALKIYLLNFHHITAEMLEKFENMFQRKLPDKLL
FETLVWLEESFRSQIVIDHSVLQRFNKNLFKAREHGFSLHPEMINMNAVDALVFTLRENF
LDSEKTYCVAPELNLGAFLFLTILGLSKQDSDILQDVQSTFVRNCQSILTNYQEP
NT seq
6468 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcaaagttctataacaaaagagtgagtgatcaaatggagtcttctacatca
tcatcttcttctttctttggtgagttgacaggttccattgctaagttttctagggcaatt
ggtaacattacttctgtttcccagaagatttcagatcatctggacgaactcaaaccctct
ataagtgatgcttccacatctttcgtatctacctgtagcactgtgaacaaagtgttagat
aaaataaacgctttgatagaacctttcctcaaagcgtattcgtttttagccactatgtac
aaatcaattaaagatatggtcctcaagttatttgagggcctttctagtaaaataaagtta
ggcttttcctgggttttaaaaaagagtgaagatgtagatgtagttgtatatggattttta
gtttttgccatttctatgttggttcttttgtatgtgtgtccatcaaatattgtggagggt
gtttctagtactgttaaaaatattttctttatagttggtaacatgttttctagtttgtac
aatttagattggttcccaaaatgggctgagaggtttactctggtggcgcaagccagtatg
ttacctggtgaatcggtgtctcatacgccaacctcgcaactcatgtcaaccatcctggca
tttggaatatcgactctggtgttcatagctgtgccaggacgacccaatggattaaacaac
ccgctatccaagatcttgtattcaacaggtagtggagctcaacagtgcaatcaactcttc
acgctttaccgcaacatgaaggattgtacttcacaagcattttcttgggttcttgagatt
atagtggacatgtttggatttaagaacccgatattgtctgctattagtgctaccttggcc
acagatctatttgaatggatgaaagaagtggatgctgtgtgtgatccagccacgcgtctt
gaaaattttgccaacaaggcttttcccacaaagctcaatcatttaagagaacaagctctc
aaaatctcagcatatattgcaacgcatccagttgctgcattcatgagtcatcgcgttagt
gcagcaattaatcagcttgaaaaagtgtatgctgagagctgcagacacatgggagtcgga
caatacaggattgagccctttatggtgcaatggtttggagctagtggctgtggcaagtca
acatccatgagattgtttataaatgatgtgctcgatagaatgggagagcctaaactcaac
cgtctctatgcagtgagtaagagagatgcgtactggtcaaattatgcgcatcaaacagcc
attcttatggatgacatgggagctttgcgcgatggtgcgggtcaatgtcaagatatcaaa
gatctcattgacatcaagtcaacgcagcctgcaccgttacctatggctgctgtggaggat
aaagggaggcactttacttccaagtatatctttgcgacctccaatctgatttctgctcca
gcccagtgtggcctcacctatcctgatgcttttgagcgcaaaagggacatcctggtggaa
tgcatcaaggatggaaaattctcaactgaagaccccactggccatctcaaattcaatatt
gttgagagcaggcgaccacatgccatcacacaccgtggtttgtcttacagcgatttgttg
gactacgtggtggcaaagtgtcaggttcatgctgaagtttccaagcaattgtttgaggct
gaatctggcattgcgagcaaaacagcccaggtacaagtgtcctcaaaggaagtggtggca
tctgttgatggggccaggcttaaaacaaaacaggacaatcccattttgtcaccagttgtc
atagatgataatgataggataatttattcaagagagctgacagtggaagctctcaagttt
gcctatcaagggagcatggacccagaggaactttttccacatgatcaccacaagcaggct
ctctttgattctcttgatgcggaccacaagcaagtgtttctcaaatggagaacagacatg
ctctaccgaggggctgatgctgagcagtatagatggttggtgcagaatattcctgatgat
tatataatgcactttaaaagcttcatttacgcatcaactatctgtgagaagaaattgtcg
gtgcagactgagatgagaactggatttgcgcacaagtgcattgatgctgatgttgacaca
ctcatatgcattgaacagatgcccccttttgtccaatttctttacactgcctttgttaga
tactggtgtaacaaagtttcaaagcagcccagtgaatcatgggtgaaggtatgttatcat
aagataattgattacattcaagaagcttggtggaacatgccttatgctcttagattgctt
atcaaggcaggcttaataataatggctctaaatggagtttttggttgcattacagcattt
ctggcctgttggcagagcaacacatttccaagtgcgtctggaaggggaggcgtgacaaat
gagtccaacagcatatccagcaagaaaaattttgggaaaaataagctcaagaacatgtta
gttggccaaggagctcaaagtttgacacaagattgggcatcagaagatggatttgtcaac
cacagtctaaagaagaatcttgtcgtcttacgacttggggaaggtgtatatttccggggg
acctatgtgtgttctggctggattatgactgttgctcatgcttttcacaatgttcgtgat
ggtacaccttttaccatagtccatccgaattcaaggtcaaaagtgcagtacaatgccaga
gaggctaaggtgatagagggtcaggacatcattctgctgagagttggcgatcctgatggt
ccaaagcctgacataagaaaacactttcctcgcaaggatgaagtgtgttttaccaaaggg
tctcaaggactgtgttgcagggcggtggcatcaacagatccaagaaatggaaatctagag
ctactcaaaatgccagtcatgatgtcaaagggctacactgtgaaagttgagtatgaattg
gacacatctagcttcaagatatgttcccagaactcctatgagtaccatatgaatggggaa
aatggtgactgcggaacgttgctgttgttacccagtgtgcagaacaaacagcccatgatt
gttggcatacactgtgcatcttacgatggtattgcagctgaacgtggctttatttcctcg
aatgcaacagcaatctacagagagcagctggaagatttacctgttggacccgtcaaagct
gccatggttcgctgtgatatccttaagtccatcagaagtagagaagctgccttgtttgag
gagaatcaagtttcatttcttggcactgttccacaagaattggcagcaaccgtcccacac
aagtcaacactcagaagaagccagctgtttgaggcttttggacctgcagaaacagcacca
tcaatactcaccgtcaatgacaagaggggtgagggctttgatccatatgttgctggggtc
atgaaatacaatgaaacagcacacaattttgatgaaggaattgccaagatggcctttgag
accctcaaatgtgctttgttgcccgtcatgaaaaatcaaaaggtgccaggcggaatgcca
tgcgctcgtgacgaagatgttgtgctcaacggtattgatggttgggattattacgatggt
atggagctgagcacttcatgtggttatccctttaacaagatgggtatgggtctcaacaaa
agagagtttgtggaaaccactggtgtgggggaccgcgttgagctcaagcgatcaacacct
gtgtttgaagcgtgggaggagttggatgttcaagtgagaaaaggcgtccatgtggacctg
ttcaccactcagtgtgctaaagacgagcgcctcccacttgagaaaatatatgggaagaga
aagacacggttgtttgagattcttcctttccattacaatatgctcgtcagaaagtacttt
cttgatttttcagcaactctcatgtcctcgcacaatgcaattccatgcaaagtaggaatt
gatcccacgagttctgaatggtcgctcctagccaatgggtttagagcagtctctaacatt
gggttctcagcagactattcaagctttgatggtcgtgctccagtgtttattttccagtgg
ttttgcgatcttgttgatgactactatggttctgctactgggagtcctgaatcaaatgcc
cgccatgctctactcatgatggcctcatgtcactataccctttgtgaggacaaggttttc
agactggttggaggcatgccgtcaggttttgcactaacagtgatcttcaactcattactg
aatgaattctatatgcggtatgctttcatttcacttttgcgaaggccgcacattgcagca
cgagcgattggtgtaaaaccacatgattttaaccagcttttcgttgctgtgtatggagat
gacaaccttgttgctgttcccttgcacttgcagtggtattcattgcccaacattgcacaa
gaactggatatggtaaatgttgtaattaaaaacggtttggacaaatcaatggatgtgaat
gaggtgcagtttcaggatttgtctgaactgacttttctgagcagagggttcaagagacat
gctctgggctaccatatggcaccgcttaagtgggtatccataatagaaccaatgtattgg
atacgaccagcacccggttgtcctgatgcacaggcaatgatggaaaatgttgaaactggc
ataagagaggcctttcatcatggtcaagttgcatatgagaaattggtggcagatgtgcaa
gaagcactgaatgaacgtggatttcgtgccacaattttcccttcctacctggaagtcgaa
caagaatggattgccaaggttactggaaatgctgatgtgatgacaatctgcgaaatggca
agagctgcgatttcatacaccccgttagagcctgggagcaaagtggaaaacttcgaaagg
gatttgaattggtttgctccaaacataggcttctgttctgcacgaactgcttctcactac
agttgggatgacgaaaccattgtggtaaattgcacaggtgcaaagaagagcaattgggtg
agaggccctgcaaactggaaggattttgaaggacaaatgtggccatacacaatttctgcg
attctggatgctcaacgcagcaaagctgcggaaggaaaggccattgtaaacaccatattt
gtctgtggtaacgggtatgcagtaggacctgtgtgtgctgcacttatggctttggcgact
aggcagttttgtgctgaggacattattgtaaggttgcgcacaattgctaatgtgctggat
ttgaacacataccctggaggttgtgcacagtacttcctacagtgcgtcccccatggtgat
aaagtggcacaagctggtatttcgctgcacagcagttttgcacatcaaggttttgaattg
ggcaatttcagaataatccgtggtgacatctcaaagactactgccttgagaatgccatat
gtggttggacccaatggaggctgggggaatttttcgacgcaggaactcacaaccctccta
tcttatctcggaaaaggctatgctgaacttgtgagtcgcaacacaaagttgactctctat
ttcaaaaacatgagccaagaggatgtccaacagctgatcacctttgtcaagttgcagggt
tactatcctagcgaagtcacagtgggccaactcaaaaattttgttgatgcagagcaactg
gtgtccaagcgcaaggagggaactcttcaccgtgttgtgttcaccaaaagagtgcttgga
tcgacatggaaattaaatggtgacaacatcatgtcaaccttatctgcggaaagcctgttt
cctggtcccttgtctgcttctgtactgaaagtattgctgagcaagcataccaggaacatg
agctgtcagaatattggcttggctctcaagatttatcttctcaatttccatcatatcact
gcggagatgcttgagaaatttgagaacatgtttcaaagaaagttgcctgataagttgctt
tttgaaacactggtttggttagaggaaagctttcgttctcaaatagttattgatcattct
gtactgcagcgcttcaataaaaatctgttcaaggcaagggagcacggattttctttgcac
cctgaaatgatcaacatgaatgcagtggatgcactcgttttcacactaagagaaaatttt
ctcgattcagaaaagacctactgtgtggcaccagagttgaaccttggggccttcctcttt
ttgacaatcttgggcctcagcaagcaagacagtgacatccttcaagatgtccagtccact
tttgttagaaactgtcaatccatccttacaaattatcaggagccttga
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