Viruses: 984362
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Entry
984362 CDS
T40000
Symbol
RNA1, SMoVgp1
Name
(RefSeq) Strawberry mottle virus; polyprotein
Virus
167161
Strawberry mottle virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_1
RNA_helicase
RdRP_4
Peptidase_C3
P21-Arc
Motif
Other DBs
NCBI-GeneID:
984362
NCBI-ProteinID:
NP_599086
RS:
NC_003445
UniProt:
Q8UYV9
LinkDB
All DBs
Position
NC_003445:154..5901
Genome browser
AA seq
1915 aa
AA seq
DB search
MGYLCDDVALWIKTFTDLGMPLDMAMEVYMNTKINDLRKCPVTYSACFTYKDWVDEHFIT
QAPIDDDYVPTEVFPDEPPVSQVLPEHPKAGADIALVDIVADQLYSSPIFPLTEVKCRAL
ASRDTNQLSRLADAVTAVTVAQCVEQGGTSVGGIQEAITSRIKRSFGWVGKAVESVNNMA
SATNLLNKIFERILSSFDFIAQTVNLFSDFLKGMKEKIAEMCLKTWEKLAEWGEHFYYVI
PMFCSIFLIATTCFLINKFLAVVAPTYCFSSSSIVQLIVVGCAIVGCKEMGAALLALSSA
GKKSFLDLIYETFGVDTSEHCDELPKDENAIPTPADWSQFENCPAFEQSSTSMTGFFGIL
GLLTFFAPRGMKCDLYEMTKWAHGLKGLADGYEKFKSITEKLAFWVYERIGLDTTWDAPA
IQSMIPVTGIRFQDWCTEVEKLNIDMLNYTNLQDDLTRARRLKEQGDKIQTHMMYSSESI
SFMMREKLRASMTTIPTIIAKFEKAVDISGTRMCPFTVLFHGPAGSGKSNSMRGFMHDVM
NEMEEPSVGRVYPRNSGDKHWSDYLRQTALYYDEFAQKKPCNGESDELELIPLVSCSHFP
LVGAAIEDKGLSFNSKYIFMCSNRADVSSNAGLADNDAFRRRRHLCVEVTRDDREFDPSN
PTYNQTFQLKNPLKPTENLKFSHEGGPLEEIGPMSYNELVVYAVNRAREHFDREVKAMKY
AVSRATNTGKAHEQAIFYCPRFTCERMKLDTHACPHLANEHFVDHEVYGEFRGEYFCCDK
NGVACDCPLTNWEKSIMHDMSANATNDEIALALALFSQEENRLMSDYAGFFELIENVDSW
RVDAPPKAKKVDLQAYVNRTWADYNDRLRYLICQHFERTKAARNTYFQRLKTLKDDIKSW
SIVGAWNSLPMGAKWVVGIIALFSFGASLIWLLSKVMAMHTWDPMEMLGVFLGSKSFVEV
VTEQGGYAESGSNTQAPIYRHKRVRAYEQGFANSSQVLDLNDSEKIESIKKAQGVLVFSK
NDGKSSTAAVTIFKDHQFLITTHELALLNFSKGCILTTRSGSSYSIYINANDVRTGSKGG
IKDPISVVKVSTYFEMAKACTGSVIFDFGTFCEGHHDGIVVPNAQKVLDQTVHKTAFSRR
HEVIDVHNMKGRVVWQANNLLAAPLYHQVGHCGRLLLARDEAKCLKIVGIHVAGVVIQEK
HISLFSEINGMHKTAEMAVQQGMEVDILELVEPEVKTDMVIKIGHVAQGQQFRPATKTSI
VKSQIHDTLWRAPETEPTVISPVDPRVPYAFDPYTAGIMKFEKEVGPLDFSDPDTPESTV
IEDISEELLREKKSLGGFALDTVCSNEVAINGVDSVPYAERLVMSTSEGYPFVLSRKAQD
TGKFRFFDKDGDRWVAKDEVLDDLKELEEAIKSDDFKGGIITIACAKDEKTKMKRVREVP
KTRIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRFAYH
FNGDYTGFDTATPRVLMMKIADMVSNLAGDGRENAIVRRNLMKMAVERRILVLRDLYQVK
GGTPSGFALTVIINSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSF
SLQVKDMYNLVTIAAELKTIGVNLSDGKKTGNLVKWMEFSELDFLKRRWVLYSGQGFLCP
LHKSAIEERLFWVRSSEDSVETLDDNCYSALMEAFHHGRDYFNFLRARIQDAYDKAGLYQ
PHLLHFNEAQAIWLEQHSIAPPNDYLDGIKKEVLPLTAGRDVMRTITTTIDATSVKGYNK
AHKEQSYHRTKVFLNPLATEITWLRSGQAAHLDVPAKLHRRNFEGIAIKVANLLKGENCC
IVEGTCGINSFALALAIGFLRKELTGVGCVNLLASYSSNDASYYTGLAMLTTVVG
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgggatacctttgtgatgatgttgcactctggattaaaactttcacagaccttggcatg
cctctcgacatggccatggaggtctacatgaacacgaagatcaatgatctgcgtaaatgt
cctgttacttactctgcttgcttcacttacaaggattgggtcgatgaacacttcattacc
caagcaccaattgatgatgattatgttcccactgaggttttccctgatgagcctccagtg
tctcaagttcttcccgaacatccaaaggctggtgccgatattgctcttgttgatatcgtt
gctgaccagctatatagttctccgattttccctctcactgaggtaaaatgccgtgcctta
gcctcacgggatacaaatcaactttctaggcttgctgatgctgtaactgccgttacagtc
gcacaatgtgttgaacagggtggcacctctgttggcggtatccaagaagcgataacttct
cgaataaagcgctcttttggatgggttgggaaggccgtggagagtgtcaacaatatggcc
tctgccacaaatttactcaataaaatctttgaacgtattctgagttcctttgactttatt
gcgcagaccgtcaatcttttctccgacttccttaaagggatgaaagagaaaatcgcggaa
atgtgtctcaagacctgggaaaaacttgctgaatggggagagcatttctactatgtaata
cccatgttttgttccatctttttaatagctaccacatgtttcttaattaataaattctta
gctgtcgttgcacctacgtattgtttttcttcttcttccatagtccaacttatcgttgta
ggatgcgctattgtaggttgtaaagaaatgggtgccgcccttttggctctttcttcagcc
gggaaaaaatctttcctggacttgatttacgagacttttggcgttgatacttctgagcat
tgcgatgaacttccgaaggacgaaaatgccattccaactccagctgattggagtcagttt
gaaaattgtcctgcttttgaacagagctcaacctcaatgactggcttctttggaatactt
ggtcttctcaccttctttgctcctcgtggaatgaagtgtgacctttacgagatgaccaag
tgggctcatggactcaagggtctcgctgatgggtacgagaaattcaaatctatcactgag
aaactagctttctgggtttatgaaagaataggtttggatactacctgggatgcgcctgcc
atacagagtatgatacccgtgacgggcattcgttttcaagattggtgtacagaggttgaa
aaactgaatattgacatgttaaattacaccaatctgcaagatgatctcacccgtgctcgg
agacttaaggaacaaggcgacaaaattcaaacccatatgatgtacagctccgaatccatt
tccttcatgatgagggagaaacttcgtgcctcgatgaccacaattcccaccataattgca
aaattcgaaaaagccgtggacatcagtggcactcgcatgtgtcctttcacagttcttttc
catgggcctgctggctctgggaagtccaattcgatgcggggctttatgcatgatgttatg
aatgagatggaggagccctctgtcggacgcgtgtaccctcgcaattctggagataagcat
tggtctgactatcttcgacaaaccgcattgtactacgatgagtttgctcagaaaaaacct
tgtaatggtgagagtgacgaacttgaactcattcccctggtttcttgcagtcattttcct
cttgttggagcagccattgaagacaaaggcctttcctttaattccaaatacattttcatg
tgttcgaatagggccgatgtctcctccaatgccggtctggccgataatgatgcttttcgc
aggcgtcgacatttgtgtgttgaggtcacacgtgacgatcgggaattcgatccctcaaat
ccaacatacaaccaaacttttcagctcaagaatcctctgaaacccacggaaaacctcaaa
ttttcacatgagggtggtccacttgaagaaattgggccgatgagttacaatgaattggtt
gtttatgccgtcaacagagcccgcgaacattttgacagggaagtcaaagcgatgaagtat
gctgttagcagagccacaaataccggaaaagctcatgagcaagccatcttctactgccca
cgtttcacgtgtgaaaggatgaaattggatactcacgcatgccctcacttggcgaatgag
cattttgtggaccatgaggtgtatggagaatttcgtggtgaatacttttgctgtgataag
aatggagtggcctgtgattgtccgctcaccaactgggagaaaagcatcatgcacgatatg
tcggccaatgccacaaatgatgaaattgctttagcgttggccctttttagtcaagaggaa
aatcgcctgatgtcggactatgcgggcttctttgaactcatcgagaacgtggatagttgg
cgtgttgatgctccaccaaaagccaagaaggtcgatctgcaagcttatgtgaaccggact
tgggcagattataacgatcgattgcggtacctcatttgccagcatttcgagagaaccaag
gctgccaggaacacatatttccagcgactcaagactctcaaggatgatatcaagagctgg
agtattgttggggcgtggaattccttgcccatgggtgccaaatgggtcgtcggtattata
gcactcttttccttcggagcttccttgatctggttgctctcaaaagttatggccatgcac
acatgggaccccatggaaatgttaggagtctttttgggttccaaatccttcgttgaggtg
gtcacggagcaagggggatatgccgagtccggttccaatacccaggcgcccatttatcgt
cacaagcgagtaagagcttacgaacaagggtttgctaactcttctcaggtcttggatttg
aatgattccgagaaaattgagtccatcaagaaagctcagggtgttttagttttctcaaag
aatgacggtaagagctccacggctgctgtcacgattttcaaggaccaccagtttcttata
accacccacgagcttgcactcctgaacttttcaaagggctgtatcctgactacgcgttct
ggcagttcctacagcatttacataaatgccaatgatgttcgaactggttccaaaggaggt
attaaggatcctattagtgttgtcaaagtgtccacctattttgaaatggcaaaggcttgc
accggttcagtgatatttgactttggaactttctgtgagggacatcacgatgggattgtt
gtgccgaatgctcagaaggtgctggaccaaactgttcacaagactgctttttcccggaga
catgaggttattgatgttcacaacatgaaaggccgggtcgtgtggcaggctaacaatctc
ttagcagcgcctttgtaccaccaagttggacactgtgggagactcctgttggccagggat
gaagcaaaatgtttgaagattgtcgggattcacgttgctggagtggtgattcaagagaag
cacattagtctgttttccgagatcaatggcatgcacaaaacagccgaaatggctgtgcaa
caaggtatggaagtggatattctagagcttgtggaaccggaagtcaaaacggacatggtt
atcaagataggtcacgttgcgcagggacaacaatttcgacccgccaccaaaacttccatc
gtcaaaagtcaaatccatgatactttgtggagggctcccgaaactgaaccaaccgtgata
tcacccgttgatccccgcgtgccctatgcttttgacccctacactgctggaatcatgaaa
tttgagaaggaggttggaccccttgatttttctgatcccgacactccagagagcactgtt
attgaagatatatctgaggagttgttgagagaaaagaagtctttgggtggttttgctttg
gacaccgtgtgttccaatgaagttgcaattaatggagtggatagtgtcccttatgctgag
aggttggtcatgagcacttctgaaggttatccttttgtcctctcaaggaaggctcaagac
actggtaagttccgtttctttgataaggatggagaccgttgggttgcaaaggacgaggtt
ttagatgatctaaaggagctggaagaagctatcaagtccgatgattttaaaggtggcatt
atcactattgcttgtgccaaagatgagaaaaccaagatgaagagggttagggaagtgcca
aagactcgaatttttgagattttacccttccactataatatcctggtacggaaatattat
ctcttcttcatgcaattcataatgagcctccatgactttctcccatgtaaggtaggcctc
aacgtttacagtaagagttgggatactatgcatgctgagcacaataggtttgcttatcac
tttaacggagattacactggttttgatactgccacaccaagagtcttaatgatgaagatt
gccgatatggtctcaaatttggctggtgatggtcgtgaaaacgccatcgttagaagaaat
ttgatgaagatggctgtcgaacgacgtattctggttctcagggatctttatcaggttaaa
ggaggcacaccttcaggctttgctctcaccgtcatcattaactcggtggtgaaccagttt
taccttatgtgggcctggaggaagatcatgagcagaatagacccaggtctggtaccctat
cgcgtcatgaggtctcattgtactttctctgtgtatggagacgacaacgttgtttctttc
agcttacaagttaaggatatgtataatcttgtgaccattgctgctgaactcaaaaccatt
ggtgtcaatttatctgatgggaagaagactggaaatcttgttaaatggatggaattttca
gaacttgatttcctcaagaggagatgggttctttattccggacaaggttttctatgcccc
ttacataaatccgccattgaagagcggttgttctgggtgagatctagcgaggatagcgtg
gaaaccctggacgacaattgttattccgcccttatggaggcttttcatcatggtcgcgat
tactttaacttcttgagagctagaattcaagacgcttatgataaggccggtttatatcaa
ccacatttactacatttcaatgaagcccaagctatttggttggaacagcattctatagct
cctcctaatgattaccttgatggtatcaagaaagaggtcttacctctaacagctgggcgg
gacgttatgagaaccattacgaccactattgatgctacctcggttaaaggttacaataaa
gctcataaagaacaatcgtatcaccgcacaaaagttttccttaaccctttggcgaccgaa
ataacctggttgcgctcaggacaagcagcccatctagatgttccagccaaactccatcga
cgcaactttgagggtattgctattaaagtggctaatctattgaaaggggagaattgttgc
atcgtggagggtacgtgtggtatcaatagctttgctttggcactggctattggtttcctt
cgaaaagagttgacgggggttggctgtgttaatctcctagcttcatattcttcaaatgac
gctagttattacacaggcttagccatgttgactactgtagttggttaa
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