Viruses: 991032
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Entry
991032 CDS
T40000
Symbol
SCNMVs1gp1
Name
(RefSeq) Sweet clover necrotic mosaic virus; RDRP frameshift protein
KO
K26525
Dianthovirus RNA-directed RNA polymerase [EC:
2.7.7.48
]
Virus
28348
Sweet clover necrotic mosaic virus
Taxonomy
SSDB
Ortholog
Paralog
GFIT
VOG
VOG cluster
Motif
Pfam:
RdRP_3
RdRP_2
RdRP_4
Motif
Other DBs
NCBI-GeneID:
991032
NCBI-ProteinID:
NP_620674
RS:
NC_003806
UniProt:
Q87029
LinkDB
All DBs
Position
NC_003806:join(121..828,828..2423)
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AA seq
767 aa
AA seq
DB search
MGFISFSLFDVDKLLVWVSKFNPGKILSSICNLGVDCWNRFRKWFFGLNFDAHMWAVDAF
MLLMPFYTEQMERVVDDFCSETQESKLEDCLELDPSVNEFFDEEVYKRDEEGVMVLQRTS
SRKHIKRVRAGMMQAAIKAVEKRITNRHTIFGDDMGKVDEAAVRATASDICGEFKINEHH
TNVLVYAAAYLAMTPDQRSIDSVKLAYNPKSQARRTLVTAVRENKAVAGFKSLEDFLGGP
LSFPVEDAPYPILGIPEIRVAEKRASRVMKSKRVVGLPAVSAGLKVCVHQTSLHNMIVSL
ERRVFRVKNAAGELVVPPKPIQNAFDSISYFRDAWLRKLSHKGQVLKSSIADVVACYSSE
KRKLYQKAADSLEKKPVQWRDSKVQAFIKVEKLECDTKDPVPRTIQPRSKRYNLVIGQYL
RLNEKKMLDAIDDVFGEKTVLSGLDNRAQGRAIAHKWRKYQNPIGIGLDASRFDQHCSVD
ALKFEHTFYKECFPGDQQLEQLLKWQLTNTGSALLPTGELVRYRTKVGRMSGDINTGLGN
KILMCSMVHAFLKETGVRASLANNGDDCVLFCEKGDYEQINRNLEQWFLCRGFEMTVEKP
VDVLEKVVFCRSQPVCIATQWAMVRQLGSLSRDCFSTQDWLNPKTFKDAMNALGQCNGII
NDGVPIHMAQAKLMHKSAETGSSIWRSLHKQMEYRWRDRLGKRTNLLWSEVEDATRLSYF
RAFSIEPYVQRIVEEYLSQVEVTCEGRETNVLPTHYSRIHKDLIKSR
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggttttattagtttttcgctttttgatgtggataaattgttggtatgggtgagcaaa
tttaacccaggtaagatactgtcttccatatgcaacttgggtgtggactgttggaaccgc
ttccgtaagtggttctttggcctcaacttcgatgcgcatatgtgggccgtggatgctttt
atgctgctcatgccattttacacggagcagatggaacgtgtagtcgacgacttctgcagc
gaaacccaagaatccaaattagaagactgtttggaattggacccctccgttaacgagttc
ttcgatgaggaggtgtacaagagagatgaggagggcgtgatggttctccaaaggacgagc
agccgtaagcacatcaaacgtgtgcgcgctgggatgatgcaagcggcaattaaggccgta
gagaagagaatcacaaatcgtcacaccatctttggtgatgacatgggtaaggtggatgaa
gctgctgttagggccaccgctagcgatatttgcggtgagttcaaaatcaacgaacaccac
accaacgtgttggtgtatgccgcagcataccttgccatgacaccagaccaacggtcgatt
gacagtgtcaagctcgcctacaatccaaagagtcaagccaggcgaactttggtcacagcc
gttcgtgagaacaaggctgttgccgggttcaaatcccttgaggattttttaggcggtcca
ctcagctttccggtcgaagatgccccataccctatcctaggcatcccggaaatcagggta
gctgagaagcgggccagtagagtcatgaaaagtaagagagtcgtagggttacctgctgtt
agtgcgggtcttaaggtttgcgtccatcaaacctccctacataatatgatagttagtctc
gaacgtagggtcttccgagtgaagaacgctgcgggagagttagtagtacctcccaaacca
atccaaaatgcatttgactctatttcctatttccgcgatgcgtggttaaggaaactgtct
cacaagggtcaagtgctaaaatcctccatagctgacgtcgtcgcatgctactcctctgaa
aagaggaaactatatcaaaaggcggctgactctttggagaagaaacccgtacaatggagg
gattccaaggtgcaagcattcatcaaagtagaaaaacttgaatgtgacactaaagatccc
gtgcctcgcacgattcagcctcggtccaaaaggtacaacctagtgataggacaatacctc
agactgaatgagaagaagatgctggacgccatagacgacgtctttggagagaagacagtt
ctgtcgggtttggataacagggcccaagggagggccatcgcccacaagtggcgtaaatac
cagaaccccatcgggatcggcttagatgcatcgagattcgatcagcattgtagcgtggat
gccctcaaattcgagcacaccttctacaaggagtgttttcctggggatcaacagttggag
caattattgaaatggcagttaaccaatacagggtctgcattattgccaactggagaactg
gtcagataccgcaccaaagtgggtcgcatgagcggcgacataaacacaggccttgggaac
aagattctcatgtgcagcatggtgcacgcattcctgaaggagacgggtgtgcgggcttcg
ttagccaataacggcgacgactgtgtccttttctgtgagaagggagattatgagcagata
aaccgcaatcttgagcaatggttcctgtgcaggggtttcgaaatgaccgtcgagaaacct
gtcgatgtactcgagaaggtggtgttctgtcgtagtcaaccggtttgcattgccacgcaa
tgggctatggtaaggcaattggggagtttgtcaagagactgcttctcaacgcaggattgg
ttgaacccaaagacatttaaagatgcaatgaacgcgcttggacaatgcaatggaatcatc
aatgatggtgtgcccatacacatggctcaggctaaattgatgcataaatcggcggaaacc
ggaagttcaatctggaggtcactccacaagcaaatggagtaccgctggagagatcgtctc
ggtaaaagaacaaatctattgtggagtgaggttgaggatgccacgagactgtcatacttt
agagcattcagtatagaaccttacgtacagaggatagtggaggagtacctctctcaagtc
gaagtaacttgtgaggggcgagaaacaaacgtattacctacacactattctagaatccac
aaagatctaatcaaatcccgataa
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