Vibrio gazogenes: BSQ33_02360
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Entry
BSQ33_02360 CDS
T04933
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vga
Vibrio gazogenes
Pathway
vga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BSQ33_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vga03400
]
BSQ33_02360
Enzymes [BR:
vga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
BSQ33_02360
DNA repair and recombination proteins [BR:
vga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BSQ33_02360
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BSQ33_02360
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSQ33_02360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ASA54688
UniProt:
A0A1Z2SBX8
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All DBs
Position
1:530853..532277
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AA seq
474 aa
AA seq
DB search
MKNNAQPTFFFFDYETWGVHPAKDRPCQFAGVRTDMDFNIIGEPLVIFCQLPVDYLPTPE
AALITGITPQQANTKGLSEPEFIQRIHQELSHPNTTCLGYNNIRFDDEVTRYTCYRNFLD
PYAWSWQNGNSRWDLLDVARACHALRPEGVVWPENEDGNTSFKLEHLSVANGIEHSNAHD
AMADVYATIELAKVIKNAQPKLFDYFYSMRHKRKLNALIDIVSMTPLMHVSGMLGSHCQY
TSWVVPLAWHPHNKNAVIMVDLAKDPQPLFDLNADEIRERLYTKRDDLQEDELPIPVKLV
HLNKCPILAPAKTLTAENARVIGIDRDKCLHHLSLMKQAQDIREKLVQVFSEERDYPTDT
DVDTMLYQDFFNPADKAAMEIIRQTSPEALQDLSISFQDARIKPLLFRYRARNYPETLTL
HEQKQWQSHCQDYFSQHMDDYILRLENLAHEHEHDPHKMQILKSIYQYVLNLTS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacaacgcacaaccaacattcttcttctttgactatgaaacctggggagtccat
cccgcgaaagatcgtccctgtcagtttgccggggtcagaacagatatggacttcaacatc
attggcgagccgctggtcatcttctgtcaactgccggtcgattatctgccgacaccggaa
gccgcactcatcactggtattacgccacagcaagcgaataccaaaggtctgtcagagccc
gagtttattcagcgtatccatcaagaattgtctcatcccaataccacctgtctgggctat
aacaatatccgttttgacgatgaagtaacccgttatacctgttatcgtaattttcttgat
ccttatgcatggagctggcaaaacggcaattcgcgttgggatctgctagacgtcgctcgc
gcctgtcatgcattacgcccggaaggggttgtgtggcctgaaaatgaagatggcaatact
agctttaaactcgaacatctttccgttgcaaatggtatcgagcatagtaatgcccatgat
gcgatggccgacgtgtatgcaaccatcgaattggcaaaagtcatcaagaatgcgcaaccg
aaattattcgattatttctattccatgcgccataaacgcaaactgaatgctttaatcgat
attgtcagtatgacgcccttaatgcatgtgtccggtatgctcggcagccactgccaatat
accagttgggttgtgccgcttgcctggcatccgcataacaaaaatgcagtgatcatggtt
gatttggcgaaagatcctcagcctctctttgatctcaatgctgacgaaattcgggagcgg
ctctacacaaaacgtgatgatttacaagaagatgagttaccgattccggtgaagctggtt
catctcaataagtgcccgatcctcgctcctgccaagacgctcacagcagaaaatgcgcgt
gtgattggcatcgatagagacaaatgtttacatcatttatctctcatgaagcaagctcag
gatatcagagaaaaactggttcaagtatttagtgaagagagagactatccaacggatact
gacgtcgatacgatgttataccaagactttttcaacccggctgacaaggctgcgatggag
attatccgccaaacatcgcccgaagccttacaagacttatcaatctctttccaagacgca
cggattaagcccttattattccgttatcgagccagaaactatcctgaaacactcaccttg
catgaacaaaaacagtggcaatcacactgtcaggactacttctcccaacatatggatgat
tatattcttcgtctggaaaatctggctcatgaacatgagcacgatcctcataagatgcag
atcctgaaatcaatctaccaatatgtgcttaacctgacatcataa
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