Vibrio gazogenes: BSQ33_07245
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Entry
BSQ33_07245 CDS
T04933
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vga
Vibrio gazogenes
Pathway
vga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSQ33_07245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vga03021
]
BSQ33_07245
03400 DNA repair and recombination proteins [BR:
vga03400
]
BSQ33_07245
Enzymes [BR:
vga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSQ33_07245
Transcription machinery [BR:
vga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSQ33_07245
DNA repair and recombination proteins [BR:
vga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSQ33_07245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASA55516
UniProt:
A0A1Z2SEA7
LinkDB
All DBs
Position
1:complement(1593602..1597804)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLEKGQLLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDMHHETEVMREELNTTNSETKRKKVTKRLKLVEAFLASGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAPGEGMYLAGPEEAEKAYRTK
SASLHARVKVRITETIRDEDGRETTETKMVDTTVGRAMLWQIVPRGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEISEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEMVINRQGDEEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTQEGVEMMPHIEGGDVKVALTELAL
GRVVADDILKPGTEEILIPRNTLIDEKWCQIIDENSVDQLRVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNKGSVKL
NNAKFVTNKNGKLVITSRATELTIIDEFGRTKEKHKLPYGSLLSKADGDLVDTGEVVANW
EAHTLPIITEVSGRVQYVDMIDGVTVSRQMDDLTGLSSSEVTEAAARPSAGKDMRPAIKL
VDEQGRDVMIPGTDMPAQYFLPGKAIVNLEDGAEVGVGDTLARIPQKSGGNRDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLIITREGGDTYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLAGEQVEYSQVKIANRQLVAEGKEPARYERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERHARRDAQKEGPS
AEQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctgaaagcacagcacaagaccgaagaatttgatgcaatc
aaaatcggcctttcttcacctgatatgatccgttcgtggtcatttggtgaagtgaaaaaa
cctgaaactatcaactaccggacgttcaaaccggagcgtgacggtttgttttgtgcgcgt
atttttggtccggtaaaagactatgagtgtctttgcggaaagtacaagcgtttgaaacac
cgtggtgtgatttgtgaaaaatgtggcgttgaagtcactcagactaaagttcgccgtgac
cgtatgggacacattgaactggcgtctccagttgctcacatctggtttctgaaatcgctt
ccgtctcgtatcggcctgttaatggatatgccgctacgtgatatcgagcgtgtactttat
ttcgaaatgtacgtcgttaccgaaccagggatgaccgatctggaaaaaggtcagttgctg
actgaagaagaatacctagatcgtctggaagagtggggcgacgaatttacagcgaaaatg
ggcgcagaagccattaaggacctattgggttctatggatatgcaccatgaaactgaagtc
atgcgtgaagagttaaatacaacaaactctgaaacaaagcgtaaaaaagtgacgaagcgt
ttgaagctggttgaagcctttcttgcttcaggaaacaaccctgagtggatgattctaacc
gtgcttcctgttttgccaccggatttgcgtcctttggtgcctttggatggcggtcgtttt
gcgacctctgatctgaatgatctatatcgtcgtgtgattaaccgtaacaaccgtttgaag
cgtctgcttgagcttgctgctccggatattattgtccgtaacgaaaaacggatgctacag
gaatcagttgatgcgttgttggataacggacgtcgtggacgtgcgattactggttcgaac
aagcgcccattgaaatcactagcggatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacttgctgggtaaacgtgttgactactctggtcgttctgttatcaccgttggtccatat
ctgcgtttgcaccagtgtggtctgccgaagaaaatggctttggaactgtttaaaccattt
atctacagcaagctagaaactcgtggtctggcaacaacgattaaagctgcgaagaaaatg
gttgagcgtgaagagccggtcgtatgggatattctggatgaagtcattcgtgaacaccct
gtactgctgaaccgtgcgccaacactgcaccgtttggggattcaggcctttgaacctgtt
ttgatcgaagggaaagcaattcagctacacccacttgtgtgtgcggcttataacgcggac
ttcgatggtgaccaaatggcagttcacgtaccgttgacgcttgaagcacagcttgaagcg
cgtacgttgatgatgtcaaccaacaatattctgtcgccagcatctggtgatccaatcatc
gtaccgtcacaggacgttgttttgggtctctactatatgacgcgtgaaaagattaatgca
ccgggtgagggaatgtaccttgctggtcctgaagaagcagagaaagcatatcgtactaag
tctgcttcactccatgcacgtgtgaaagtccgcatcactgaaaccattcgtgatgaagat
ggccgtgaaacaacagaaacgaaaatggttgatacaaccgtcggtcgtgcgatgttgtgg
caaatcgtgccgagaggtctgccgtacagcctggtcaaccaaaagctgggtaagaagcag
atttccaatctgttaaacgaggcttatcgtaaactgggtctgaaagacactgttatcttc
gctgaccagatcatgtatacaggttttgcttatgcagcactgtctggcgtttctgttggt
atcgacgacatggttgtaccgccagcgaaatatacagagatctctgaagcagaagaagaa
gttcgcgaaattcaggagcaattccaatctggtcttgtgactgctggtgagcgttacaac
aaggtgatcgatatctgggcttcaaccaatgatcgtgttgctaaagccatgatggaaaac
ctgtcttctgaaatggttatcaaccgtcagggtgatgaagagaagcaagagtcattcaat
agtatctatatgatggctgactctggagctcggggttctgcagctcagattcgtcagttg
gcgggtatgcgtggtctgatggctcgtccggatggttctatcatcgaaacaccgatcaca
gcgaactttaaagaaggtctgaacgttcttcagtactttatttcaacgcacggtgcgcgt
aaaggtctagcggatacggcactgaaaactgcgaactcaggttatctgactcgtcgtttg
gttgacgttgcacaagacgttgttgttaccgagcatgactgcggtacgcaagaaggtgtc
gaaatgatgccgcatatcgaaggtggtgatgttaaagttgctttgactgaactagccttg
ggtcgtgtggttgcagacgatattctcaagccagggactgaagaaattctgattcctcgt
aacacattgatcgacgaaaaatggtgtcagatcatcgatgaaaactcagttgaccaattg
agagttcgttcggttgtaacttgtgactctgacttcggttgttgtgctcaatgttatggt
cgtgatctcgcgcgtggacatctggtgaaccaaggtgaatctgttggggttatcgcagca
caatctatcggtgaaccgggtactcagttaacgatgcgtacgttccacatcggtggtgca
gcatcgacagcagcggcagagaacagtattcaggcgaagaacaaaggttctgtgaaactg
aataatgcgaaattcgtaacgaataaaaacggtaagcttgtcattacctctcgtgcaact
gaactgacgattatcgatgagttcggtcggacgaaagagaaacacaaattaccttacggt
tccttgctgagcaaagctgatggtgacttagttgacactggtgaagttgttgcaaactgg
gaagcgcatactctgccaatcattactgaagtatcaggtcgtgttcaatatgttgacatg
attgatggtgtgacggtttctcgtcaaatggatgacttaaccggtctgtcttcaagtgaa
gtaacagaagcggctgcacgtccttctgccggtaaagatatgcgtccagcgatcaaactg
gttgatgagcaaggccgtgatgtgatgattcctggtactgacatgccagcgcaatacttc
ctgccaggtaaagcaattgtgaacctggaagatggtgcggaagttggtgtcggtgatacg
ttagctcgtattcctcagaaatctggcggtaaccgggatatcaccggtggtctacctcgc
gttgcggatctgtttgaagctcgtaaaccaaaagaacctgcgattctggctgagcacact
ggtacagtgtcatttggtaaagaaacgaaaggtaagcgccgtttgattatcacgcgtgaa
ggtggtgatacttatgaggaaatgattcctaagcatcgtcagttgaacgtgtttgaaggt
gagaaagtcgagcgtggtgatgtaattgctgacggtccagagtctccacacgatatcttg
cgtctgcgtggtatccatgcagttacacagtacattgcgaatgaagttcaggaagtctat
cgcttacaaggcgttaagattaatgacaagcacattgagacgattgttcgtcagatgtta
cgtaagtgtaccattacctttgctggtgactctgagttcctagcaggtgagcaggtagaa
tattctcaggtgaaaattgccaaccgccaattggttgctgaaggcaaagaacctgcacgt
tatgaacgtgaactgttaggtattactaaagcatctttggcaacagaatcgttcatctct
gctgcatcgttccaagaaacgactcgcgtcctgacagaagctgcggtttctggtaagcgt
gatgacttacgtggtctgaaagagaacgttatcgttggtcgattgattcctgctggtaca
ggttttgcctaccatcaagaacgccatgcaagacgtgatgcgcagaaagaaggtccatct
gctgaacaggcaacggacaatttggctgcattgttgaatgctggtttctcgtctgatgag
taa
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