Vibrio gazogenes: BSQ33_07370
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Entry
BSQ33_07370 CDS
T04933
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vga
Vibrio gazogenes
Pathway
vga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ33_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vga03019
]
BSQ33_07370
Enzymes [BR:
vga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSQ33_07370
Messenger RNA biogenesis [BR:
vga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSQ33_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASA55536
UniProt:
A0A1Z2SEC6
LinkDB
All DBs
Position
1:1618417..1619739
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AA seq
440 aa
AA seq
DB search
MKKTHITEQKFADLGLDPQVTAGLEQKGFAYCTPIQALALPVVLSGRDIAGQAQTGTGKT
LAFLTATFNHLLTTPAQEEREPTQPRAIIMAPTRELAIQIFNDAEPLVQSTGVKVALAYG
GESYDKQQSKLQQGVDILIGTTGRIIDFYKQKVFNLNHIQVVVLDEADRMFDLGFIKDIR
FLFRRMPPPKNRLNMLFSATLSYRVQELAFEHMNSPEHVVVEPAQKTGHRIKEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHKCERVWGHLAADGHRVGLLTGDVPQKKRERILE
QFTQGQLDILVATDVAARGLHIPQVTHVFNYDLPDDSEDYVHRIGRTGRAGESGHSISFA
CEEYAINVPGIETYIEHSIPVSDYDPAALLTDLPSPLKLASSKTSRRTNTGGSRSGRQNG
RGNNSARKRPRQNNHQNKNS
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaaattcgccgacttgggattagaccctcaagtt
acagcaggtttggaacaaaaagggttcgcttattgcaccccaatccaagccttggcgctg
ccggtagtgctctccggccgtgacattgcaggccaggcccaaactgggactggtaaaacg
cttgcgtttcttactgcaacctttaatcatctgctaactacgccagctcaagaagagcgg
gagccaactcagccacgagcaattattatggcaccaactcgtgagttagcgatacaaatt
tttaacgatgcagaaccactggtccaaagtaccggcgtaaaagtcgcactggcttatggt
ggtgaaagttacgacaaacaacagtctaagttacagcaaggtgttgatatccttatcgga
acaaccggtcggattatcgatttctacaaacaaaaagtcttcaacctgaaccatattcag
gtggtcgttctcgatgaagcagaccgaatgtttgatctcggttttatcaaagatattcgt
tttctgttccgccgaatgccgccaccgaagaaccgactgaacatgttattctccgcaacc
ctctcttatcgggttcaggaattggcatttgagcacatgaacagtccagagcatgtcgtt
gtcgaaccagcgcaaaaaaccggacatcgaatcaaggaagaactgttttacccatcgaat
gagcacaaaatggctttattgcagaccctcattgaagaagagtggccggacagagcaatc
atttttgccaataccaaacataaatgtgaacgagtctggggacatctggctgccgatggt
catcgtgtcggactgctgaccggtgatgtgccgcagaaaaaacgggaacgcattctggag
caatttactcagggtcagttggatatcttagtcgcaaccgatgttgctgcacgaggactg
catatccctcaagtcactcacgtctttaactacgatttaccagacgacagtgaagactat
gtacaccggattggtcggacgggcagagccggagaaagtggtcattcgattagcttcgcc
tgcgaagaatacgctatcaatgtgccgggaatagaaacatatatcgaacattcaattccg
gtttctgattatgacccagcggcattattgactgacttacccagtccgttaaaacttgct
tcatcaaaaacatcaagaagaaccaatactggtggttcacggtctggacgtcagaatgga
cgtggtaataattcagccagaaaacgtccgcgacaaaacaaccatcagaataaaaatagc
tga
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