Vibrio gazogenes: BSQ33_09365
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Entry
BSQ33_09365 CDS
T04933
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vga
Vibrio gazogenes
Pathway
vga03420
Nucleotide excision repair
vga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ33_09365
03430 Mismatch repair
BSQ33_09365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vga03400
]
BSQ33_09365
Enzymes [BR:
vga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ33_09365
DNA repair and recombination proteins [BR:
vga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSQ33_09365
MMR (mismatch excision repair)
Other MMR factors
BSQ33_09365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
SseB_C
Motif
Other DBs
NCBI-ProteinID:
ASA55876
UniProt:
A0A1Z2SFC9
LinkDB
All DBs
Position
1:2065873..2068047
Genome browser
AA seq
724 aa
AA seq
DB search
MMDPSLLIDGLNDKQREAVAAPLQNLLVLAGAGSGKTRVLVHRIAWLMTVEEASPFSIMS
VTFTNKAAAEMRGRIEALMMGSASGMWNGTFHGICHHILRAHYLDAKLPEDFQIIDSEDQ
LRLIRRLIKAQNLDEKQWPARQVCWWINGKKDEGVRPQHIDTYHDPVTTTYLRLYQAYQE
ACDRAGLVDFAEILLRTQELLRENQFIREHYQARFKHILVDEFQDTNNIQYAWLRLMAGP
DCHVMIVGDDDQSIYGWRGAKVENIEKFVQEFSSVNTIRLEQNYRSTQTILEAANTLIAN
NTERMGKNLWTEGQKGESISVYSAYNELDEARFVVNKIKIWQEEGGALQDSALLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALCYLRLISNRNDDAAFERVVNTPTRGLG
DKTLETVRFAARERGCTMWQACVQLLEEKVLVGRAGGAMSRFVELINALEDDTFEMDLHR
QTDHVIKASGLYAMYEQEKGEKSKARLENLEELVTATRQFEKPEEAEEMSMLTAFLTHAA
LESGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSLMSVEEAGRLEEERRLC
YVGMTRAMKKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRF
SQKVVKESFNETGFSLGSRVKHPKFGEGTIINFEGAGAQSRVQVAFNGEGIKWLVTAYAK
LESL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccctctctcttaatcgacggtttaaatgataaacagcgcgaagctgttgca
gcccctttgcagaatttattggtactggccggtgctgggagtggcaaaacccgggtattg
gtccatcgcattgcttggctgatgaccgttgaagaagcttcaccgttttcaatcatgtca
gtgacatttaccaataaggccgctgccgagatgcgtggccggattgaagcgctgatgatg
ggcagtgcttcaggaatgtggaatggtacttttcacggtatctgccatcatatcttgcga
gcccactatctggatgccaaattaccggaagattttcagattattgattctgaagatcag
ctgcgtttaattcgccggttaatcaaagcgcagaatctggatgaaaaacaatggccggcc
cgtcaggtttgctggtggattaacggtaagaaagatgagggggttcggcctcagcatatc
gatacctatcatgatccggtgaccacgacttatctgcgcttatatcaggcttatcaggag
gcctgtgaccgtgccggtttagtggattttgccgaaattttgctcagaacgcaggagttg
ctgcgggaaaatcagtttatccgcgagcattatcaggcccgttttaaacatattctggtg
gatgaatttcaggataccaacaatattcagtacgcttggctccggctgatggctggcccc
gattgtcatgtcatgattgtcggtgatgatgaccagtcgatttatggctggcgaggcgcc
aaggttgaaaatattgagaaatttgtgcaagagttttcatcagtcaacacgatccggctc
gagcagaactatcgttccacccagacgattctggaagccgcaaatacactgatcgctaat
aacaccgaacggatggggaaaaacctatggacggaaggacagaagggcgaatctatttcg
gtgtactccgcttataacgagctggatgaagcgcgttttgtggttaacaagattaagatt
tggcaggaggaaggcggcgcattgcaggatagcgccttactctaccggaacaacgctcag
tcgcgggtgctggaagaagcgttgattcaagccggtttgccctatcggatctacggtgga
atgcgattcttcgaacgacaagagattaaagatgcactgtgttacttacgtctgatttca
aaccgcaatgatgatgctgcatttgagcgtgtcgtgaatacaccgacgcgcgggctgggc
gataaaacgctggaaacagtccgtttcgcagcgcgtgaacgtggttgtacgatgtggcag
gcgtgtgttcagcttctggaagaaaaagtgctggtgggccgtgccggtggtgcaatgagc
cgtttcgtcgaattaatcaatgcactggaagatgatacgtttgagatggatttgcaccgt
cagaccgaccatgtaattaaagcctctggtttgtatgcgatgtatgagcaagagaaaggt
gagaagtcaaaagcccgcttggaaaacttggaggagctggtcactgcgacgcgtcaattt
gaaaagcctgaagaagccgaagagatgagtatgctgacggcatttctgacgcatgctgca
ctggaatccggcgaaggacaggctgatgaatttgatgatgccgtgcaactgatgacgttg
cacagtgctaaaggtctggagtttccgttggtatttatggttggtgtcgaagaggggatg
ttcccgagcctgatgtcggttgaagaagccggcaggctggaagaggagcgccgcctctgc
tatgtcgggatgacccgggcgatgaagaaactctacatcacttatgcggaaatgcggcgt
ttatacgggcaggataaatatcacaaaccatcacgttttattcgcgaattgccggaaggc
tgtctcgatgaagtgcgaatgaaagctcaggtcagccgcccgaccagcaccggccgattc
agccagaaagtggtcaaagagagtttcaatgaaaccggatttagtttgggcagtcgggtg
aaacacccgaaattcggtgaaggtaccattattaattttgaaggggcaggggcacaaagc
cgggttcaggtcgcgtttaacggggaaggcatcaaatggctggtaaccgcctatgccaag
ctggaatctttataa
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