Vibrio gazogenes: BSQ33_09695
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Entry
BSQ33_09695 CDS
T04933
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vga
Vibrio gazogenes
Pathway
vga03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BSQ33_09695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vga03400
]
BSQ33_09695
Enzymes [BR:
vga01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BSQ33_09695
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BSQ33_09695
DNA repair and recombination proteins [BR:
vga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BSQ33_09695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zf_2nd_IFT121
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ASA55938
UniProt:
A0A1Z2SFL8
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All DBs
Position
1:2138176..2138985
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRLGISPFLVGEQVKSVSVRTPKLRWAIPFELQQITGQVIRRIHRRAKYLL
LETDVGTAIIHLGMSGSLRVLDVSLPPGKHDHVDLFMMNGKVLRYNDPRRFGAWLWVEKG
MTHSVFDNLGPEPLSDELTAEYMAARAKGKRVTVKQFIMDNKVVVGVGNIYANESLFTTG
VRPTREAGSLTMREWETLVTEIKAVLTHSIQQGGTTLKDFAQTDGKPGYFAQELRVYGKE
GEPCPECGQAIVAQKIGQRNSFYCPLCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttaccggaagttgaggtaagccgactgggaattagtccttttttggtgggc
gagcaagtgaaatctgtgagtgtgcggacaccgaaacttcgttgggcgatcccttttgag
ctacagcagattacagggcaagtgattcggcggattcatcgcagagcaaaatatctcttg
ttggaaaccgatgtcggcaccgcgattattcatttgggaatgtcaggctctttgcgcgta
ttggatgtttcgcttccacccggcaaacacgaccacgtcgatctgtttatgatgaacggg
aaagtgttgcgctataacgatccgagacgatttggtgcgtggttatgggtagagaagggc
atgactcattcggtgttcgataatcttggacctgaaccgctttctgatgaattgactgct
gagtatatggccgcgagagcgaagggcaaacgagtaaccgttaaacagttcattatggac
aataaagtggtggttggtgtcgggaatatttatgccaatgagtcgttgtttaccactggc
gttcggcctacccgtgaggctggttcactgacaatgcgtgaatgggagacgctggtgaca
gagattaaggcggtgctgacccactcgattcaacagggtggcacgaccttgaaagacttt
gctcaaacggatgggaagcccgggtattttgctcaggaactccgtgtttacggaaaagaa
ggggagccgtgccctgaatgtggtcaggcgatcgtggcgcagaagattgggcaacggaat
tctttctattgcccgctctgtcaaaaatag
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