Vibrio gazogenes: BSQ33_11560
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Entry
BSQ33_11560 CDS
T04933
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vga
Vibrio gazogenes
Pathway
vga03410
Base excision repair
vga03430
Mismatch repair
vga03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BSQ33_11560
03430 Mismatch repair
BSQ33_11560
03440 Homologous recombination
BSQ33_11560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vga03400
]
BSQ33_11560
DNA repair and recombination proteins [BR:
vga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BSQ33_11560
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BSQ33_11560
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSQ33_11560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ASA56268
UniProt:
A0A1Z2SGH9
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All DBs
Position
1:2526064..2527803
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AA seq
579 aa
AA seq
DB search
MIEVKRRPVADISLLPDSIPPILRRLYIGRGVQHVSQLEKSAKSLHSYQLLDGIERAVAI
LFDAIQRQQRIIVVGDFDADGATSSALSVLALRMMGSHRVDYLVPNRFDDGYGLSPEVVD
QALAMNAEVIMTVDNGVSSIEGVRYAKQQGLTVIVTDHHLPGHVLPEADAMVNPNLPSCP
FPSKALAGVGVAFYLMMALCVAMRGQNWFGQQGIPEPKLMELLDLVALGTVADVVPLDEN
NRVLVHQGLQRIRAGHVRPGIQALIEVAKRDARHLVAADFGFALGPRINAAGRLDDMSFG
VELLLCDNIHAARRMASELDALNQTRKEIESGMKQEAMAFCERLKLGEGSELPFGIALFQ
RDWHQGVIGILASRIKDSYHRPVIAFADAGDGLLKGSCRSIPGLHMRDTLDLIDTRHPGL
ILKFGGHAMAAGLSIKASDFEHFSCQFDRVVRDNLDESALKGVLLSDGELLPEEFSMYTA
ETIRAGGPWGQAFPEPLFDGEFKVLDQKLVAEKHLKLMLEPIYLGHTTHKMIDAIAFNVD
VRRWPDRSVKTVHIVYKLDINEFRGNQSLQLIVDHIEAR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtaaaaagaagacctgtcgctgatatttccttgttaccggatagcattcct
ccgattctgagacgtttgtatattgggcgtggtgtccagcatgtcagccaattggagaag
agtgctaaatctttacacagttaccagttgcttgacggaattgagcgggcggttgccatt
ctgtttgatgccatacagcgtcagcaacgaatcatcgttgtcggtgatttcgatgctgat
ggtgcaaccagctcggcattatcggtcttggcactgcggatgatgggaagtcatcgggtc
gattatctggtgccgaatcgttttgatgatgggtatggtttgagtccggaggttgttgat
caggcattggcgatgaatgctgaagtgatcatgacggttgataatggggtttcttcgatt
gaaggggttcgttatgccaagcagcagggattgacggtgatcgtgactgaccatcacctg
ccgggtcatgtgttgcctgaagcggatgcgatggtgaatccaaatttacccagttgcccg
ttcccttcaaaagcattggcgggtgtcggggtggctttctatctcatgatggcgctttgt
gttgccatgcgtgggcaaaattggtttgggcagcaaggtataccggaaccgaaattaatg
gaattgctggatttggtcgcactgggaaccgtcgctgatgtggtgccgctcgatgagaat
aatcgtgtgttggtccatcaaggccttcaacggattcgggccgggcatgtgcgacccgga
attcaggcgctcatcgaagttgctaaacgagacgctcgtcatctggttgctgctgatttc
ggcttcgctttagggccgagaatcaatgccgcaggtcggctggatgacatgtccttcggt
gttgaactgttgttgtgtgacaatattcatgctgcacggagaatggccagtgaattggat
gcgctgaatcagactcgtaaagagatcgagtcgggaatgaaacaagaagcgatggcattt
tgcgagcgactgaaattaggggagggcagtgaactccctttcggtatcgcattatttcaa
cgagactggcatcaaggcgtgatcgggattctggcctctcgaatcaaggattcttatcat
cggccagtcattgcttttgcggatgccggagacggtttactcaaaggatcttgtcgctca
atccccggtctgcacatgcgtgatacgctggacttaatcgatacccggcatcccggtttg
atcctgaaatttggcggacatgccatggctgcagggctgtcaatcaaagccagtgacttt
gaacatttctcttgccagtttgatcgggtggttcgcgataaccttgacgaatcagcactt
aaaggcgtgcttttgtctgacggagaactgctgccagaggagttttctatgtataccgcg
gaaacgatcagagccggtggtccgtggggacaagcatttcctgagccactatttgatggt
gaatttaaagtgctggatcagaaattggtcgcagaaaagcatttgaaactcatgcttgag
ccgatttatctgggacataccacgcataaaatgatcgatgcgattgcattcaatgtcgat
gttcgccgttggccagatcgatccgtcaaaaccgtgcatatcgtttataaactggatatt
aatgagtttcgtggtaatcagtcgttacagctgattgtcgatcatattgaagctcgttag
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