Vibrio gazogenes: BSQ33_11865
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Entry
BSQ33_11865 CDS
T04933
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vga
Vibrio gazogenes
Pathway
vga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSQ33_11865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vga03019
]
BSQ33_11865
03016 Transfer RNA biogenesis [BR:
vga03016
]
BSQ33_11865
Enzymes [BR:
vga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BSQ33_11865
Messenger RNA biogenesis [BR:
vga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BSQ33_11865
Transfer RNA biogenesis [BR:
vga03016
]
Prokaryotic type
tRNA degradation factors
BSQ33_11865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
OB_PDCD11
S1_2
KH_2
S1_TP0910
S1_RRP5
KH_SLS1_2
Spt6_S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ASA56322
UniProt:
A0A1Z2SGN7
LinkDB
All DBs
Position
1:2596201..2598336
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTIETGVIARQATSAVMVTMDDTSVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDGFTNEVQIIATVMA
VNPDVQPDIPSLIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSAKELGESRLDLVV
AGTENAVLMVESEADILSEEEMLSAVVFGHEQQQAVIQAINEFAAEVAAPAWSWSAPEVN
VSLKALIAEHAEARFAEAYQITEKMARYEQVGQIKSDVIATLLEQDAALDENELRNMLSS
LEKKVVRSRILSGAPRIDGREKDMVRALDVRTGVLPRVHGSSLFTRGETQAIVTATLGTQ
RDAQIIDELTGERKEHFLFHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPSID
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEDDFVVLS
DILGDEDHLGDMDFKVAGTSDGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDK
AIHSARDDISQFAPRIHTMKISSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGEAAKHAIRRIEELTAEVEVGRIYTGKVTRIVDFGAFVAVLGAKEGLVHISQIADQRV
EKVTDYLKEGQEVQVKVLEIDRQNRIRLSMKEAAVKPAAEDAPQQEQSDAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaccagttgtgaaaacgtttcaatacggcaatcacaccgtcacgattgaa
actggcgtgattgcacgtcaggcaacatcagcagttatggtcaccatggacgatacatct
gtattcgtttcagtggttgggaaaaaagaagcggtagaaggtcaagacttcttcccgctg
acagtgaactatcaggaacggacttatgctgccggtaagattcctggtggattctttaaa
cgtgaaggccgtccttcagaaggtgaaactctgacagctcgtctgatcgaccgtccgatt
cgccctctgttccccgatggtttcaccaatgaagttcagattattgccactgttatggcc
gtaaaccctgatgttcagcctgatatcccaagcttgatcggtacttctgccgcgctggca
atttctggtatcccattcaatggtccaattggtgcggctcgtgtcggtcacattgatgga
cagcttgttttgaacccaagtgcgaaagagctgggagaatctcgtctggatctcgtggtt
gccggaacagaaaatgcggtactgatggttgaatcagaagcagatattctctctgaagaa
gagatgctttcagcagtcgtatttggtcatgaacagcaacaggctgtgattcaagctatc
aatgaatttgctgctgaagttgcggcacctgcatggtcatggagcgctcctgaagtcaat
gtcagcctgaaagcattaatcgctgaacatgcggaagctcgctttgctgaagcatatcaa
atcactgagaaaatggcgcgttacgagcaagtgggtcagatcaaatctgatgttatcgcg
acattacttgagcaagatgcagctctggatgaaaatgaacttcgtaacatgctgagttca
ttagagaagaaagtcgttcgtagccgtattctgtctggtgcaccgcgtatcgacggtcgt
gagaaagatatggttcgagcactggatgtccgcacgggtgttttgcctcgcgtccatggt
tcatcattatttacccgtggtgaaacacaagctatcgtgacagcgacgctgggaactcag
cgtgatgcgcaaattattgatgaattaaccggtgaacggaaagagcacttcctgttccac
tataacttcccaccttactgtgtcggtgaaacaggtttcgtcggttctccaaagcgtcgt
gaaattggtcatggtcgtttggcgaaacgtggtattcaggccgttatgccatcgattgat
gaattcccttataccattcgtgtggtctctgaaattactgaatcaaatggttcttcttca
atggcttcagtatgtggttcatcgctggcattgatggatgctggtgtgccaattaaggcc
tctgttgctgggatcgcgatgggactcgtcaaagaagaagatgattttgtggttctgtct
gacatcttaggtgatgaagaccatcttggtgatatggactttaaagttgcgggtacatct
gacggtgtgactgcactgcaaatggatatcaaaatcgaagggatcaccaaagaaatcatg
cagatcgctttgaatcaggctaaaggtgctcgtctacacatcttgtctgtgatggataaa
gcgattcacagtgcacgtgatgacatttctcagtttgcgccacgtatccatacgatgaaa
atcagttctgataagatcaaagatgttatcggtaaaggcggtgctgtcattcgtgcactg
acagaagaaaccggcactacgattgaaatcgaagatgatggaacaatcaagatcgctgcg
acagaaggcgaagcggctaaacatgcgattcgtcgtattgaagagttgacggctgaagtt
gaagttggtcgtatctacactggtaaagtcactcgtatcgttgactttggtgcttttgtc
gctgttcttggtgccaaagaaggtctggttcatatctctcaaatcgcagatcaacgtgta
gagaaagtgacggattacctgaaagaaggtcaagaagttcaggtgaaagtgctggaaatt
gatcgtcagaaccgtatccgtttgagtatgaaagaagcagctgtaaaaccagcggctgaa
gacgcaccacaacaagaacaatctgacgcagaatag
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