Vibrio gazogenes: BSQ33_14590
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Entry
BSQ33_14590 CDS
T04933
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vga
Vibrio gazogenes
Brite
KEGG Orthology (KO) [BR:
vga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vga03016
]
BSQ33_14590
Enzymes [BR:
vga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BSQ33_14590
Transfer RNA biogenesis [BR:
vga03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BSQ33_14590
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ASA56798
UniProt:
A0A1Z2SHZ6
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All DBs
Position
1:3187788..3188912
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AA seq
374 aa
AA seq
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MDYQMITSSDELEAVCRKALQCPVVMLDTEFVRTRTFHAQLGLIQLYDGESVALIDPTTI
TDMTPFVNLLKAPQVLKVLHAAGEDLEVFYHQFECAPAPFVDTQILAAFMGYGLSTGFAA
LVADFTAVELDKSESRTDWMARPLSQKQLDYAAADVFYLMPVYQQLLEKVQQRGWWDAAL
EESRLQVEKRTRSYQPADAYLDIKGAWQLSPKQLAILKPLATWRYEEALKRNLALNFVIK
EQDLLTIARLELVNFKRMEAEGVDPRSVKRHGAKISQLVKEGQAVSESDYPARIIPVSDY
PGYKQLFKRLKDQVNVQSEKLGLSPEFLASRKQLNQLLGWVWKMASDPQYAPDLMQGWRK
EALGELLYEMVPSA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttggactatcaaatgattaccagctcagatgagcttgaagcggtgtgccgcaaagcattg
cagtgtcccgttgtgatgttggatacggaatttgtccggacccggacatttcatgcccaa
ctgggattgatccagctttatgacggagaatccgttgcattgattgacccgacaaccatt
acagatatgactcccttcgtcaatctgttgaaagccccacaggtgcttaaagtgcttcat
gccgccggtgaagatttagaagtgttctaccatcaatttgagtgcgcaccggcaccgttt
gtggatactcagattctggcagcatttatggggtatggcttgtcgacaggctttgccgcg
ttggttgccgatttcacagcggttgagctcgataaaagtgaatcccggacggactggatg
gcaaggccgttgagtcagaaacaactagactatgctgctgcggatgttttttatctgatg
ccggtttatcagcaattgttggaaaaagttcaacagagaggttggtgggatgcagcgttg
gaagaatcccggctacaggtggaaaagcggacccgaagctatcagccggcagacgcttat
ctcgatatcaaaggggcatggcaactgtcaccgaaacaactggcgatcttaaaacctttg
gcgacctggcgctacgaagaagccttaaagcgtaatctggcactgaattttgttatcaaa
gagcaggatttattgaccatagcccggttggaattagtcaatttcaagcgcatggaagcc
gaaggggttgatcctcgctcagtgaaacgccacggtgcaaaaattagtcaactggtgaag
gaagggcaggcggtcagcgaatctgattatccagcgcgcattattcctgtttcagactac
cccggatacaaacagctgtttaaacgactcaaagatcaagtcaacgtgcagtctgaaaag
ctgggtttatcaccggaatttcttgcatcccggaaacagttgaatcagttactgggctgg
gtatggaagatggcgtccgatccgcaatatgctccggatctgatgcaaggatggcgtaaa
gaagcgctgggtgaactcttatatgaaatggtgccgtctgcgtaa
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