Vibrio gigantis: MID13_00480
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Entry
MID13_00480 CDS
T08202
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03030
DNA replication
vgi03410
Base excision repair
vgi03420
Nucleotide excision repair
vgi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MID13_00480 (polA)
03410 Base excision repair
MID13_00480 (polA)
03420 Nucleotide excision repair
MID13_00480 (polA)
03440 Homologous recombination
MID13_00480 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgi03032
]
MID13_00480 (polA)
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_00480 (polA)
Enzymes [BR:
vgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MID13_00480 (polA)
DNA replication proteins [BR:
vgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MID13_00480 (polA)
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MID13_00480 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MID13_00480 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ULN64350
LinkDB
All DBs
Position
1:103557..106370
Genome browser
AA seq
937 aa
AA seq
DB search
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT
LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNK
DNAEMSYELATIKLDVELEETPESLVKAQPNTDELIKLYGQLVFKSWLNELLEGGSGVVE
ADEKSAAAGAGSVRSSASATTSTVEMNTSAVTIDRSNYETILDESSFNIWLEKLKASEVF
AFDTETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPILEDE
SQAKVGQNLKYDMSVLARYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCIS
FEQIAGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYEEIEVP
LIPVMSRIERTGVRIDDFQLNQLSIDFEQRLEALKSKIFDIAGKEFNVNSTLQLREVMFE
DLGMPVKKKTPKGVPSTNEEVLQELALDYPLPKILLEYRSLFKLKTSYTDTLPKKINAKT
GRIHCSFNQAGTATGRMSSVEPNLQQIPIRNEEGRLIRRAFVAEDGYKILAVDYSQIELR
IMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIEQVTTEQRRRAKAVNFGLIYGMSAFG
LAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRN
GMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEES
ALAEIESKVQELMESAAELEVPLVAEAGHGDNWDQAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtattcctgataatccattgattctgattgatggctcttcttacctatatcgc
gcgttccatgcttaccctggcacaatgagcaatggtgatatcccaaccaacgctgtttac
ggtgtagttaacatgttgcgcagcatgatgcgtcaatttgcttctgaccgtattgcggta
atttttgatgcgaaaggaaagacgttccgtgatgacatgtacccagagtacaaggcaaac
cgtccacctatgcctgatgatcttcgttgccagatcgagcctttgcacaatgtgattcgt
gcgatgggtttgccacttatctctattcccggcgttgaagcggatgatgtgatcggtacg
cttgcttctcaagcttctgcgatgggtatgcctgtgcttattagtactggtgataaagat
atggcgcagctggttgatgacaacgttactctgatcaacaccatgaccaacgtggtaatg
gatcgtgaaggcgtgattgagaagtttggcatcccgccagagcttattatcgattacctt
gcgctgatgggcgataaagtcgataacatcccaggtgttccgggtgtcggtgataagaca
gcgacggctttgttgcaaggtattggtagcatcgaaaagctgtatcaaaaccttgatgat
attgccgctcttggcttccgtggttcaaaaactatggctaagaagctgattgataataaa
gacaacgctgagatgtcttatgagcttgcaacaatcaaactggatgttgagcttgaagag
acgcctgagtcattagtaaaagcgcagccaaatacggatgagctgattaagctatacggt
caactggtcttcaaatcttggctaaacgagctacttgaaggcggtagtggtgtggttgaa
gcggatgagaaatctgccgcagcgggagccggatcagtacgcagcagcgcttctgcaaca
acgtcgactgttgagatgaatacgtctgccgtgacgattgatcgcagcaactacgaaacc
atcctcgatgaatcgtcattcaatatttggctagaaaaactgaaagcgtctgaagtgttt
gctttcgatactgagacagacagcctagattacatggttgcgaatctcgtaggcctgtca
ttcgcaactgaagaaggcgttgccgcttacgtaccggttgctcacgactacctagatgca
ccacaacagctggatcgcgattgggtactagaacagcttaagccaattcttgaagatgaa
tcacaagctaaagttggtcagaacctgaagtacgatatgagcgttttagcgcgctacggt
atcgagatgaaaggcatcaagcacgacaccatgctagcgtcttacgttttcaatagcgtt
ggcggtaagcatgatatggatagcctagcgctgcgcttcctacagcacagctgcatctca
ttcgagcagatcgcaggtaaaggtaagaagcagcttactttcaaccagattgagctgggt
gaggcgtctccatacgctgcagaagatgcagatgtgacactacgtcttcataaccgttta
atggaaaacatcgagcaagatgaaaagctaaaagcgatttatgaagagatcgaagtacca
ctgatccctgtgatgtctcgaattgaacgcactggtgtgcgtatagatgattttcagctt
aatcagctatctattgatttcgaacaacgcttagaggctttgaaatcaaagatctttgat
atagcagggaaagaatttaatgtgaattcaactttgcagctacgagaggtcatgtttgaa
gacttaggcatgcctgtgaagaagaaaacacccaaaggtgttccttcaactaatgaagag
gttcttcaagagctagcgttagactacccattaccgaaaattttgttggaatatagaagt
ctattcaagctgaaaacatcttatacagatactttacctaagaagattaatgcgaaaaca
ggccgaattcattgttcatttaaccaagcaggaacggcaacagggcgaatgtcttccgtt
gagccaaaccttcagcaaatacctatcagaaatgaagaaggccgtttaattcgaagagct
ttcgtcgcggaagacggttataaaattttggctgtcgattactctcaaattgaattgcgt
attatggcgcacctttcgggagataaagcgcttctggaagcattccaacaaggtaaagat
atccacgcggcaacggctgctgagatcattggtgttgatattgagcaagtaacgactgag
cagcgtcgtcgagctaaagccgttaacttcggtcttatctacggcatgagtgcctttggc
ttggctaagcaattgggtattcctcgtggcgaagcacagcactacatggatacttacttc
gagcgttaccctggcgtgatgcagtatatggaagacacgcgcagtgcggcttcagagcaa
ggtttcgtcgaaaccatttatggccgtcgtctgcaccttcctgaaattcaatctcgtaat
ggaatgcgtcgtaaggcagctgaacgtgcggcgatcaatgcaccaatgcaaggtacagcg
gcagacattatcaagaaagcgatgctattggttgatgaatggattcaagcggaaggcgat
ggccgtgtgaaactgcttatgcaagtacacgatgaattggtatttgaagtcgaagagtca
gctttagccgaaattgaaagtaaagtacaagaattgatggaatcagctgcagagctagaa
gtgccgcttgtggcggaagctggccatggtgacaactgggatcaagcccactaa
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