Vibrio gigantis: MID13_02385
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Entry
MID13_02385 CDS
T08202
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
vgi
Vibrio gigantis
Pathway
vgi00220
Arginine biosynthesis
vgi00240
Pyrimidine metabolism
vgi00250
Alanine, aspartate and glutamate metabolism
vgi01100
Metabolic pathways
vgi01110
Biosynthesis of secondary metabolites
vgi01240
Biosynthesis of cofactors
Module
vgi_M00051
De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
MID13_02385 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
MID13_02385 (carB)
00220 Arginine biosynthesis
MID13_02385 (carB)
Enzymes [BR:
vgi01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
MID13_02385 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATP-grasp_3
Dala_Dala_lig_C
ATP-grasp_4
ATPgrasp_Ter
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
ULN64690
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Position
1:513329..516559
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AA seq
1076 aa
AA seq
DB search
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPDM
ADATYIEPIQWEVVRNIIAKEKPDAVLPTMGGQTALNCALDLEKHGVLEEFGVEMIGATA
DAIDKAEDRSRFDKAMKAIGLECPTADTAKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGG
IAYNKEEFEEICRRGLDLSPTNELLIDESLIGWKEYEMEVVRDKNDNCIIVCAIENFDPM
GIHTGDSITVAPAQTLTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELMNDITGGATPASFEPTIDYVVTKIP
RFNFEKFAGANDRLTTQMKSVGEVMAIGRNQQESLQKALRGLEVGATGFDEMVDLDAPDA
LTTIRHELKEAGAERIWYIADAFRAGMSVDGVFNLTQIDRWFLVQIEDIVKLEQELKAKG
FAGLNKDELNKLKRKGFADARLSKILGVAESEIRRLRDQYDIHPVYKRVDTCAAEFSSDT
AYMYSSYDDECEANPTDKDKIMILGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC
NPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTPLKLARALEAAGVPI
IGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSREIGFPLVVRPSYVLG
GRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAVEVDVDAICDGERVVIGGIMEH
IEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRGLMNTQFAVKNNEVYLIE
VNPRAARTVPFVSKATGAPIAKIAARVMAGQSLESQGFTKEIIPPYYSVKEVVLPFNKFP
GVDPLLGPEMRSTGEVMGVGATFAEAYSKAELGCGNIYPEGGRALLSVREGDKERVVDLA
SKLSKLGYQLDATHGTAVILGEAGINPRLVNKVHEGRPHILDRIKNNEYTYIVNTAAGRQ
AIEDSKVLRRGALAEKVNYTTTLNAAFATCMAHTADAKTSVTSVQELHAQVKASQA
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtactgacattaaaagtattcttattctaggtgctggcccgatcgttatc
ggccaagcatgtgagttcgattactctggtgctcaagcttgtaaagcgcttcgcgaagaa
ggttaccgagttattcttgtaaactcgaacccagcgacaatcatgactgacccagatatg
gccgatgcaacttacatcgagcctatccaatgggaagttgtgcgcaacatcatcgctaaa
gagaagcctgatgcggttctacctactatgggtggccaaactgcattgaactgtgctcta
gacctagaaaagcacggtgttcttgaagagttcggtgttgaaatgattggtgcaacggct
gacgctattgataaagcagaagaccgttcacgcttcgataaagcaatgaaagcaattggc
cttgagtgcccaactgctgatacagcgaaaaccatggaagaagcttacaaagttttagac
atggttggcttcccttgtatcattcgtccatcgttcacgatgggtggtactggtggcggt
atcgcttacaacaaagaagaatttgaagaaatctgtcgtcgtggtttggacctatctcca
acaaacgaacttcttatcgatgaatcacttatcggttggaaagagtacgagatggaagtg
gttcgtgacaaaaacgacaactgcatcatcgtatgtgcgattgaaaacttcgacccaatg
ggtattcacacaggtgactcaatcactgtggctccagctcaaacgctgacagacaaagaa
taccaactaatgcgtaacgcatctctagcagtattgcgtgagattggtgttgaaacaggt
ggttcaaacgtacagtttggtatcaacccgaaagatggccgtatggttatcatcgagatg
aacccacgtgtatctcgctcttcagcactagcttctaaagcgacaggtttcccaattgct
aagattgcagcgaaactggctgttggcttcacgctagacgagctaatgaatgacatcact
ggcggcgcaacgccagcatcattcgaaccaacaatcgactacgtagtaactaagattcct
cgttttaacttcgagaaatttgcaggtgctaacgaccgtctaacgacgcaaatgaagtct
gttggtgaagttatggctatcggccgtaaccaacaagaatctctacaaaaagcacttcgc
ggcctagaagttggcgcgactggttttgacgaaatggtagacctagacgcaccagatgct
ctaacgactatccgtcacgaactgaaagaagctggcgcagagcgtatttggtacatcgct
gacgcattccgtgctggtatgtcggtagatggtgtattcaacctaacgcaaatcgaccgt
tggttcctagttcaaatcgaagatatcgttaagctagagcaagaactgaaagcgaaaggc
ttcgctggtctgaacaaagacgagctaaacaagcttaagcgtaaaggttttgcagatgcg
cgcctatctaaaattctaggtgtagcagaaagcgaaatccgtcgtctgcgtgaccaatac
gatatccacccagtttacaagcgtgtagatacgtgtgcggctgagttctcttcagataca
gcttacatgtactcatcttacgatgacgagtgtgaagcaaacccaacagacaaagataag
atcatgattctaggcggcggtccaaaccgtatcggccaaggtattgaatttgactactgt
tgtgtgcacgcatcactagcactacgtgaagatggttacgaaactatcatggttaactgt
aaccctgagacagtttctacagactacgatacatctgaccgtctgtacttcgaaccagta
acactggaagacgtactagccatcgctcgtgttgagaagccaaaaggcgttatcgttcag
tacggtggtcaaacaccacttaaactggctcgtgctcttgaagctgctggcgtgccaatc
atcggtactagcccagacgcaatcgaccgtgcagaagaccgtgagcgtttccaagttgct
gtagaccgtctaggcctacttcaaccagaaaacgcaacagtaacaacaatggagcaagcg
gttgagaaatctcgcgaaatcggcttcccacttgttgtacgtccttcttacgtacttggt
ggtcgtgcgatggaaatcgtatacgacgagcaagatttacgtcgctacttcaacgaagca
gtaagcgtttcaaacgaatctccagtactacttgatagcttcctagacgacgctgttgaa
gtagacgtagatgcgatttgtgacggtgagcgcgttgttatcggcggtatcatggaacac
attgagcaagcgggtgttcactcaggtgactctgcatgttctcttcctgcatacacgcta
agccaagaaatccaagacgtaatgcgcgagcaagttgaaaagctagcgttcgagttgggt
gttcgtggtctgatgaacacgcagtttgctgttaagaacaatgaggtgtacctaatcgag
gttaaccctcgtgcagcacgtacggttccatttgtatctaaagcaactggtgcgccaatc
gctaagattgcagctcgtgtaatggcgggtcaatcgctagagtctcaaggctttacgaaa
gaaatcatcccaccttactactcagtgaaagaagttgtacttccattcaacaagttccct
ggtgttgacccactgttaggcccagaaatgcgctctactggtgaagttatgggtgttggt
gcgacgtttgcagaagcatactctaaagctgaattgggttgtggcaacatctacccagaa
ggcggccgtgcacttctttctgttcgcgaaggcgacaaagagcgtgttgttgacctagca
tctaagctatctaagcttggttaccagctagacgcaacacacggtacagcggtgatcctt
ggcgaagcgggtatcaacccacgtctagtaaacaaggtacacgaaggtcgtcctcacatt
cttgaccgtatcaagaacaatgagtacacgtacatcgtgaacacagctgctggtcgtcaa
gcgattgaagattctaaagtacttcgtcgtggcgcattggctgagaaagttaactacacg
actacgctaaacgctgcattcgcgacttgtatggcgcacactgcagacgcgaagacgtca
gtaacttcagttcaagaactgcacgcacaggttaaagcttctcaagcttaa
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