Vibrio gigantis: MID13_05960
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Entry
MID13_05960 CDS
T08202
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
vgi
Vibrio gigantis
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_05960
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
MID13_05960
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
AAA_22
DUF7577
zf-tcix
DZR
Zn_ribbon_3
SNF2-rel_dom
T1R_D3-like
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ULN65349
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Position
1:complement(1293918..1295660)
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AA seq
580 aa
AA seq
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MYTLRPYQADSVKSVIHYFRKHQTPAVLVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHEKYEGYGLKGSIFSAGLGRKETDQQVVFASVQSVVRNLDSFSNQFSLLVIDECHR
VPDEKTSSYQKVITHLRENNSGIKVLGLTATPYRLGMGWIYQYHTRGQVRSDEPRFFRDC
IFELPIRYLLDEGFLTPARMIDAPVLSYDFSQLKPASTGRYKEAELDMVIEQSKRATPQI
VDQIIHLAQDKLGIMVFAATVRHAQEILGLLPEGEASIVIGDTPTLERDQIISDFKERKI
KFLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLSPGKKECLVLDYAGNSY
DLYQPEVGDPKPDSDSETITIPCPACGFNNNFWGKLDSNGFLLEHFGRKCQGYFTDEDTG
EREHCNYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALVFECLEMD
LNVLKDDKGKSQLKVTYRGENQAQVHEFWSLTTKKQKQNFKDQFVRPHLADRHRPFEEAS
PSKVVAHQHRFRPPQFVIARKVGRFWKMRDKIFEDELQQR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtatacactccgcccgtaccaagctgattccgtaaaatcagtgattcattacttcaga
aaacaccaaactccggctgttctcgtgcttccgacaggtgcaggaaaaagccttgtgatt
gcagagctggcaaggcttgcgaaaggtcgtgtattggtacttgctcacgtaaaagagttg
gttgaacagaaccatgaaaaatatgaaggttacggactaaaaggatcgattttctcggcg
ggtttaggccgtaaagagacagaccaacaagtggtgtttgcttcggtgcaatccgttgtt
cgaaacctcgactcattctctaaccaattttcactgttggttatcgacgaatgccatcgt
gttcccgatgaaaagaccagtagctatcaaaaagtaatcactcacttgcgagagaataat
tctggtatcaaggtgcttggattaacggctaccccatatcgtcttgggatgggctggatt
tatcaatatcacactcgcgggcaagtgcgttcagatgagccacgcttcttccgcgactgt
atttttgagctgccgattcgttacctgctcgacgaaggcttcttaacgcctgcacgcatg
atcgatgcacccgttttgagctacgacttttcgcagttaaagcctgctagcacaggtcgc
tacaaagaggccgaactcgacatggtgatagagcaatcgaagcgagcgactccacaaatt
gtcgaccaaatcattcatctagcccaagacaaactcggcatcatggtgttcgctgcgacc
gttagacacgcgcaagagatcctcggcttattgccagaaggggaagcttcaattgtgatc
ggcgacacaccaacactcgaacgtgaccaaatcatcagtgatttcaaagagcgtaaaatc
aagttcttggtcaacgtatcggtattaaccacaggttttgatgcgccgcacgtcgattta
atcgctattttacgcccgaccgaatccatcagtttatatcaacaaatcgttggccgcggc
ttacgcctatctccagggaaaaaagagtgtttggtactcgactatgcaggtaacagttac
gacctttatcaacctgaagtgggcgatccaaaacccgattcagacagtgaaaccatcaca
atcccctgcccagcttgcggcttcaataataacttttgggggaaattagacagcaatggt
ttcctgcttgaacactttggtcgtaaatgccaaggctactttaccgatgaagacacaggc
gaacgtgaacactgtaattatcgttttcgtgcaaaatattgcggtgaatgtggcgccgat
aacgacattgccgcgcgtatttgccatgagtgcgatgcaaccttagtagacccagacaaa
aagctaaaagaagcactgaatctaaaagatgccttggtatttgagtgtttagaaatggac
ctcaacgtgcttaaggacgacaaaggtaaatcacaacttaaagtcacttaccgtggtgaa
aaccaagcgcaagtccatgagttttggtcattaaccaccaagaaacagaagcaaaacttc
aaagaccagtttgttcgccctcaccttgcagacagacatcgtccttttgaagaggcctca
ccgtcgaaagtggttgctcaccaacatagattccgcccacctcaattcgtgattgcacgt
aaagtaggacgcttttggaaaatgagagataagatattcgaagacgaactccaacaacgc
tag
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