Vibrio gigantis: MID13_07315
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Entry
MID13_07315 CDS
T08202
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vgi
Vibrio gigantis
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_07315
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MID13_07315
Archaeal homologous recombinant proteins
MID13_07315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
nSTAND3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ULN65597
LinkDB
All DBs
Position
1:1613710..1617426
Genome browser
AA seq
1238 aa
AA seq
DB search
MKILSLEFENLNSLKGRWKLNFTQSPFAENGLFAITGPTGAGKTTILDAICLALFHRTPR
LKSIAKGNNELMTRGTGECFAELEFEVQGKTYRSNFHQKRARGKHDGALQTPTCEFADAD
TDKVLETMLTKKTKLVEQVTGLDFSRFTKSIMLSQGEFAAFLNANANDRAELLEELTGTE
VYSLISERIYDHFKSSEESLNHLKAKAEGVSLLSDEQIQELTTERDTLETEQKRLAEQLK
EWQAHLSWWKDVTKAKHTIATSEHDLKTAQSDLEQNQLSLTRLANSEPAEKLRPLHKDLK
RCEHELNLTQINLDNSTKLLAVREAEKLDAQTKLTQSNEAVENVKAEQQNQEKIIEQVRP
LDNQISVLKDKQVSVVNAANTLNEQHAQQRNQQLMLVQQIDELKQQEKLSADYLEAHQTD
QYLEKHLGQWQAKVEQVRTLESQHSQQLNLAKQTYTALEAQQAVIKNAQQTKASQDQALA
ELVLAENNTKQQWEALHANTSETALLAQKEVLELWNRNTHSLFEINRGFLNAQQQLAVKT
QAHQTNVQQADKLSKEREVLVERYKEKETSLERLTLLIAQEGELAKYRAKLESGSECPLC
GSTEHTVEQSQDIANLIAQQEREQHELAIIKKDGQEHRQQLDSLAPMITALSDDIQRAQA
DIQQAQLNWQSVIGKLQQSLSDFPAVTLELTLLSVADLGNETAVTAFVEQCELHLNQTQQ
QLKVLVDAKNSYAEAEKQRLSVSVMADKAQANLVLSEERLSDLNKQNQAVNEQASQTAQA
KEQQWHSLKESIVETSIEAPELDHIDAWFAEKLQASNTWLQTKQQHAELEKRLITQCAEK
KTLDDKLSSAQKELDALSKESELLTAELARISGERAQLFGEQDIQVASQVMKQKVIDAVT
AFDAAQLVLNRCELEHRTEQTKHTGFSDELTAKQTSNTQASNIWVEALQASPFEGEASFE
AALLDEEVRTQLQNLKKSLDEAIVSAQARLNTAKAAQMELQNHKNAQTWQEQDQQQVEQA
TADCQEAQQSHASKIGAISANLETDRQNRSNQQDLFKQISEQQVEFDDISRLNSLIGSKN
GDKFRKFAQGLTLENLVYLANKQLQRLHGRYELKRKADDGLELQVLDTWQGDVMRDTKTL
SGGESFLVSLALALALSDLVSYKTSIDSLFLDEGFGTLDSDTLDIALNALDNLNASGKMI
GVISHVEALKERVPVQLKVTKHSGLGVSEMEKQYKVVT
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttaagcctagaatttgaaaacctgaactctttgaaagggcgttggaagctc
aatttcacccaatcaccgtttgcagaaaatggcctgtttgcaatcacgggcccaacaggt
gcgggtaaaacgactattctggatgcgatttgtttagcgctattccaccgcacgcctcgt
ttgaaaagcatagctaaaggcaataacgagctgatgactcgcggtacaggtgagtgtttc
gctgagcttgaatttgaagtgcagggcaaaacttaccgttctaacttccaccagaagcga
gcgcgcggcaagcacgatggtgcactgcaaacgccaacatgtgaatttgcagatgcagac
actgataaagtcttagaaaccatgttaaccaagaaaactaagttggtagagcaggtgact
ggtttggacttctcacgctttactaagtcgatcatgctttctcaaggcgaatttgctgcc
ttcttaaatgctaacgcgaatgatcgtgccgaattgttggaagaacttactggtactgaa
gtctatagcctgatttcagaacgtatttacgatcactttaaatcgagtgaagagtcgctt
aatcacctgaaggcaaaagctgagggtgtgagtttactgtctgatgagcagattcaagag
ctgacaacagagcgtgacacattagaaactgaacagaaacgtttagctgaacaactaaaa
gagtggcaagctcatcttagctggtggaaagacgtgaccaaagcgaagcatactattgcg
accagtgaacacgacttaaaaacagcgcagagtgatttagagcaaaaccaactttccttg
acgcgtttggcaaacagcgaacctgctgagaaattgcgaccgttgcacaaagacctaaaa
cgctgcgagcatgagctcaatctcacgcaaattaacctagataacagtactaagttgctc
gcagtgcgcgaggccgagaagttagatgcccaaactaagttaactcaaagtaacgaagcg
gttgaaaacgtaaaagctgagcagcaaaatcaagagaagatcattgagcaagtccgccca
ctcgacaatcaaatatcggtactcaaagacaagcaagtctcggtggttaacgccgcgaat
acgctgaacgaacaacacgcgcagcaacgtaaccaacagcttatgttggtgcaacagatt
gacgaattgaagcagcaagaaaagctgagtgctgactatctagaagctcatcagacggac
caatacctcgaaaaacacctaggtcagtggcaagccaaagttgagcaagtgcgtacgtta
gaatctcagcattcgcaacaactcaatctagcgaagcaaacctatacggcgctagaagct
caacaagctgtgattaaaaacgcacagcaaaccaaagcatcgcaagatcaagctctagct
gaattggtgctggccgagaacaataccaagcagcaatgggaagcgttacatgcgaacacc
agtgaaacagcattactcgcccaaaaagaggtgttggagctttggaatcgcaacactcac
tcgttgtttgaaattaatcgaggttttttaaacgcacagcaacagctcgctgttaagaca
caagcccaccaaactaacgttcagcaggctgacaagctatcgaaagagcgtgaagtattg
gtagaacggtacaaagagaaagagacatctcttgagcgcttaaccttgttaatcgctcaa
gagggagagttagctaagtaccgtgctaagttggagtctggctctgaatgtccgctgtgt
ggttctactgaacatacggttgagcagtcacaagatattgcgaacttaatagctcagcaa
gagcgcgaacaacatgagttggcgattatcaaaaaagacggtcaagagcatcgccaacag
ttggactctcttgctcctatgatcacagcacttagtgatgatattcaacgtgcgcaagcg
gatattcagcaagctcaacttaactggcaatctgtaattggaaagctccaacagagtttg
tctgactttccggccgtgacgctggagttaacactgctctcagtggctgacctagggaat
gaaacggcggtgacggcttttgttgagcaatgcgagcttcatttaaatcaaacccagcag
cagctaaaagtcttagtggatgcaaaaaacagctatgccgaggccgagaaacaacgttta
tcagtgagcgttatggctgataaagcgcaagctaatcttgtgttatcggaggagcgcctc
agcgacctcaataagcaaaaccaagctgtgaatgaacaagcaagtcaaaccgcgcaagcc
aaagagcaacaatggcactcactaaaagagagtattgtggaaacctcgattgaggctcct
gaactcgaccacattgacgcttggtttgctgaaaaactgcaagcctcaaacacatggctg
caaaccaaacagcaacatgctgaactagagaagcgtttgattacccaatgtgctgagaaa
aaaacactggatgacaaactcagcagtgcacaaaaagagctggatgcgttaagcaaagaa
agcgaattgctcacagccgagttagctcgtattagcggtgaaagagcacagttgtttggt
gagcaagatattcaagtagcaagccaagtgatgaaacaaaaggtaatagatgcagtaaca
gcatttgacgccgctcagttggtacttaatcgctgcgaattggaacatcgaaccgaacaa
acgaaacatacaggcttttctgatgagttaaccgcgaagcaaacaagcaacacgcaagct
tcgaatatttgggttgaagctttacaagcgagcccatttgaaggggaagctagttttgaa
gcggcactgctcgatgaagaggtgcgcactcaattacaaaaccttaagaagtctctggat
gaagcaattgttagtgcacaagcaaggctgaatacggcaaaagcagcgcagatggagcta
caaaaccacaaaaatgcgcaaacatggcaagaacaagatcaacagcaagtggagcaggcg
acggctgattgccaagaagctcagcaaagtcatgcgagtaaaattggcgcaatttctgcc
aaccttgaaacggatcgtcagaaccgaagtaaccagcaagatttgtttaagcagatttct
gaacaacaagtcgagtttgatgatatttctcgtttgaactcgctgattggctctaagaat
ggcgataagtttcgtaaatttgcccaaggcttaacactggaaaacttggtgtatttggcg
aataagcaacttcagcgtttgcatggtcgctatgagctaaaacgtaaagctgacgatggt
ttagagctgcaagtattagatacttggcagggcgacgtgatgcgtgataccaaaactcta
tcaggcggcgaaagcttcttggtaagtttggcgttggcattagcgctttctgatcttgtt
agctacaaaaccagtattgactctctgttcctggatgaaggtttcggcacgctagacagc
gatacattggatatcgcacttaatgcgttagataacctgaatgcatcaggcaagatgata
ggtgtaattagtcacgttgaagcactgaaagagcgtgtgccagttcaactaaaagtaacg
aaacactctggccttggtgtcagtgagatggagaagcagtacaaggttgttacgtga
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