Vibrio gigantis: MID13_10195
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Entry
MID13_10195 CDS
T08202
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vgi
Vibrio gigantis
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgi03032
]
MID13_10195 (topA)
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_10195 (topA)
Enzymes [BR:
vgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MID13_10195 (topA)
DNA replication proteins [BR:
vgi03032
]
Prokaryotic type
DNA Topoisomerases
MID13_10195 (topA)
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MID13_10195 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ULN63299
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Position
1:complement(2293276..2295906)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGQKAAAVSTKGMSPED
KARIKKEKDRKALIKKMGINPYKEWEANYQILPGKEKVVAELQKLAENADHVYLATDLDR
EGEAIAWHLREIIGGDETRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTAEKTDF
RLQVAQKDGVAFKPENEAQTQAAVSVLEKAQYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAAREYIGSEFGAQYLPPKALV
YGSKEGAQEAHEAIRPSSVDVKSEDLNGVDADAHKLYSLIWNQFVACQMTPAQYDSTTVS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQIGDKLDLIALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDGSFN
DLMNYDFTARMEQKLDQIAEGEASWKGVLDNFFEDFTGDLEKADLDEDAGGMKPNHIVET
DIECPTCSRKMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEHGEFKVKGYDGPLVECDKCGS
DMVLKNGRFGKYMDCTSEDCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELVRFKDRISPKFQYLTSAPVADPDGKPTVVRFSRKTK
ENYVRTEVDGKPSGWTALYIDGKWEVTDKRKKPKEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcgccagccaaggctaaaactatcaataaatat
cttggcaaagactttgtcgttaagtcgagtgtaggtcacgtacgtgatttaccaacggcg
ggtcaaagtactggtcaaaaggctgctgcagtttcaaccaagggtatgagcccagaagat
aaagctcgtatcaagaaagaaaaagatcgcaaagctcttatcaaaaagatgggtatcaac
ccatacaaagagtgggaagcgaactaccaaatcctacctggtaaagagaaagtcgttgct
gaattgcaaaaactggctgagaacgcagaccatgtttatctcgcaaccgatttggatcgc
gaaggagaagctatcgcatggcaccttcgtgagatcatcggtggcgatgaaacgcgatac
aagcgagtggtttttaatgaaatcaccaagaatgctattcaacaagcctttgaaactcca
ggtgagctaaatattgatggcgtaaacgcacaacaggcacgacgttttatggaccgtgtt
gttggctttatggtgtcacctctgctttggaaaaaagtagcacgaggcctatccgctggc
cgtgttcaatcagtagcggtaaaactattggtagaacgtgagcgcgagatcaacgccttt
atccctgaagagttctgggatgtgcatgctgataccaaaacagcagagaaaaccgacttt
agactgcaagtcgcacaaaaagacggtgttgcgtttaaacctgaaaatgaagcgcaaaca
caagctgcggtgagcgttttagaaaaagcgcaatacgaagtatgtaagcgtgaagaccgc
ccaaccaagagcaagccgtctgcaccttacattacgtcgacgctgcagcaagcggcaagt
acgcgtcttggttacggcgtaaagaaaaccatgatgctggcacagcgcctgtatgaagcg
ggttacatcacttatatgcgtactgactcaacgaatttgagttcagaagctgtagaagct
gctcgtgaatacattggttctgagttcggcgctcaatatcttccacctaaagcacttgta
tatggcagcaaagagggcgctcaagaggctcacgaagcgattcgtccttcaagtgtagat
gttaagtcggaagacctaaacggcgtagacgcagacgcacacaagctttactcgctaatt
tggaatcaattcgttgcgtgtcaaatgacaccagctcaatacgattcaacgacagtaagc
gttaaagcagatgagtacacgttaaaagcgaaaggtcgtattcttaaatttgatggctgg
actcgtgttcagcgtccaatgggcaagaacgaagatacgatccttccagcagtgcagatc
ggcgataagcttgatctcattgcgttagaccctaaacagcacttcactaagccaccggct
cgtttcactgaagcggcgctagttaaagagcttgagaagcgtggtattggccgtccttca
acatacgcatcaatcatctcgacgattcaagaccgtggttatgtaaaagttgagcagcgt
cgtttctatgcagagaagatgggtgaaattgtgactgaccgtcttgacggcagcttcaat
gacctaatgaactacgactttactgctcgtatggagcaaaagttggaccaaatcgcagaa
ggcgaagcaagttggaaaggcgtgctagacaacttcttcgaagacttcactggcgattta
gaaaaagcagatttagacgaagacgctggtggtatgaagccaaatcatatcgtggaaacc
gatattgaatgtccgacttgtagccgtaaaatgggtattcgtactgcttcgactggtgta
ttccttggttgttctggttatgcacttccaccaaaagagcgttgtaagacaacaatcaac
cttggtgatgaagaaggcattatcaacgttttagaagaagacgttgaaaccgcagcactt
cgagctaaaaagcgttgtcctatctgtgaaacggcaatggatgcttatctgattgatgat
aagcgtaagatgcacgtatgtggtaacaaccctaactgtgaaggttatgtggttgaacac
ggcgaattcaaagtaaaaggctatgatggaccgcttgttgagtgtgacaaatgtggttca
gatatggttctgaagaatggccgtttcggtaaatacatggactgtacgagtgaagattgt
aagaacactcgtaagattctgaaaaatggcgaagtagcgccacctaaagaagatccagtg
catttccctgaacttccgtgtgaaaactcagacgcgtactttgttcttcgtgatggtgcg
tctggcctatttatggctgctagcaacttccctaaatcacgtgaaacacgagcaccattg
gtggaagagttggttcgttttaaagatcgtatctcacctaagttccagtacctaacgtca
gcgccggttgctgaccctgatggtaagccgacagtggttcgttttagccgtaagactaaa
gaaaactacgttcgtactgaagttgatggaaaaccatccggttggactgcgttgtacatt
gacggtaagtgggaagttacggataagcgtaaaaagcctaaagagaagtaa
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