Vibrio gigantis: MID13_10690
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Entry
MID13_10690 CDS
T08202
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
vgi
Vibrio gigantis
Pathway
vgi02020
Two-component system
vgi02024
Quorum sensing
vgi05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MID13_10690
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
MID13_10690
05111 Biofilm formation - Vibrio cholerae
MID13_10690
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vgi02022
]
MID13_10690
Two-component system [BR:
vgi02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
MID13_10690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
HTH_8
AAA_5
Mg_chelatase
AAA_16
AAA
AAA_2
AAA_19
HTH_29
AAA_22
HTH_23
PIF1
HTH_7
Motif
Other DBs
NCBI-ProteinID:
ULN63395
LinkDB
All DBs
Position
1:complement(2414047..2415435)
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AA seq
462 aa
AA seq
DB search
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILL
DLRLPDMTGMDVLFAVKQKYPEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRI
TVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFITGESGTG
KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRF
REDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEW
PGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSLRLKEKQNEDITVKDIFPLWI
TEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcaaaaacgctagataacaaatcgaagtatttgttgatggtagaggatacggct
tcggtagcagcgttatatcgctcgtatcttacaccgctcgaaattgatatcaacatagtc
ggcactggccgcgatgcaatcgagagtttgaatcatcgaatcccagaccttattttatta
gatctacgtttgcctgatatgacgggtatggacgtattatttgctgtaaaacaaaaatac
cctgaagttcctgttattttcatgacggctcacggctctatcgataccgccgtagaagcc
atgcgtcatggttctcaagatttccttatcaagccgtgtgaagctgaccgactccgtatt
acggtgaacaacgcgatccgcaaagccaccaagcttaaaaacagctctgaacatccggga
aatcagaactatcaaggtttcattggtagcagccaaaccatgcagcaggtttaccgaact
atcgattctgctgcatcaagtaaggcgagcattttcattactggtgaaagtggtacgggt
aaagaggtatgtgcagaagcgattcatgcggcgagcaagcgtggtgacaagcctttcatt
gcgattaactgtgcggcgattcctaaagatctgattgaaagtgagctgtttggtcacgtt
aaaggcgcctttactggtgcggcaactgaccgccaaggggctgctgaacttgctgatggt
gggacactgttcctcgatgagttgtgcgaaatggatcttgaactgcaaactaagcttctt
cgtttcattcaaaccggtaccttccaaaaagtcggctcttcaaaaatgaagagtgttgat
gtgcgctttgtttgtgcaaccaaccgtgacccttggaaagaagtacaagaaggtcgcttt
agagaagatttatactatcgtttatacgtgattccgctgcacttgccgccattgcgcgag
cgcggagaagatgtcatcgagattgcatactcgctactaggttatatgtcggtcgaggaa
gggaaggcgtttgtacgttttgctcaagaagtgctggatcgttttaatcaatatgagtgg
ccgggtaacgttcgtcagttgcaaaacgtattgcgaaacgtggtggttttgaataatggt
aaagagattactcttaacatgcttcccccccccttgaaccaaccgattgaaaacagtctg
cgattgaaagagaagcagaatgaagacatcacggtaaaagatattttcccattgtggatc
actgagaaaacggctatcgaacaggccatcaaagcatgtgatggtaacatccctcgtgcg
gcaggttttttagatgtcagtccatcgacgatataccgtaagttgcaaacgtggaatgcg
aagcagtaa
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