Vibrio gigantis: MID13_11155
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Entry
MID13_11155 CDS
T08202
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vgi
Vibrio gigantis
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vgi03016
]
MID13_11155 (rnd)
Enzymes [BR:
vgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MID13_11155 (rnd)
Transfer RNA biogenesis [BR:
vgi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MID13_11155 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ULN63478
LinkDB
All DBs
Position
1:complement(2520832..2521950)
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AA seq
372 aa
AA seq
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MDYQIITQLKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL
GEMTPFVGLLKDASVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA
LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ
QESDLQVAKRIRKVNPDTAYLDIKGAWQLKPKQLAILRPLATWRLKEAIKRDLALNFVFK
EQDLWAVARFAMKDPKHMEQEGFDYRSVRRHGAKISSIVKLAEHTPEEEYPAPVERLMDF
PGYKQLFKVLKDEVKTASQHSGLATEFLASKKQLNQVLSWVWKYDRNPEKLPDVMQGWRL
DVVGEKLSKAIK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtggattatcaaatcattacccaattgaaagaccttgagcgagtttgccaacaagcacgt
gaagccgatgtcgttatgcttgatacggagtttgttcgtacaagaacctattaccctcaa
ttaggcttgattcagttatttgatggtgaaacgctgtcactgattgaccctattgctctt
ggtgaaatgacaccatttgttggattgttgaaagacgcttctgttctgaaagtgctacac
gcttgcggtgaagatttggaagtgttccaaaacgcatttggctgcacaccaacaccaatg
gtagatacacagatcatggcagctttcttaggtcatggtttatcaacaggctttgctgct
ctggtttcagagtttgtcggtgttgatctagataaaagtgaatctcgcactgactggttg
gcgcgtccgctttctcaaaagcaactcgactacgcggcagcagatgttcactacttaatg
cctatgtacaacaagcttcttgagaaagtgatggaagcaggctggtgggaagcggctcaa
caagagtctgatttacaagttgccaagcgaatccgtaaagtaaacccagatacggcttac
cttgatattaaaggggcatggcagctaaaacctaagcagctagcgatcttacgacctcta
gcaacgtggcgtctaaaagaagccattaagcgtgatttggcgctgaattttgtcttcaaa
gagcaagatttatgggcagtggcacgtttcgcaatgaaagatcctaagcacatggagcaa
gaaggttttgattaccgctctgtacgccgccatggtgccaaaatcagctcaatcgttaaa
ttagctgaacatactccagaagaagagtacccagcaccagtcgaacgtctaatggacttc
cctggctacaagcagctgttcaaagtgttgaaagatgaagtaaaaaccgcatcacaacac
agtggtttagcgacggaatttttggcatctaagaagcaacttaaccaggtgttaagctgg
gtgtggaagtacgatcgtaacccagagaagctacctgatgttatgcaaggctggcgttta
gatgtggttggcgaaaaactgagtaaagcaatcaaataa
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