Vibrio gigantis: MID13_11740
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Entry
MID13_11740 CDS
T08202
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03030
DNA replication
vgi03430
Mismatch repair
vgi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MID13_11740 (dnaE)
03430 Mismatch repair
MID13_11740 (dnaE)
03440 Homologous recombination
MID13_11740 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vgi03032
]
MID13_11740 (dnaE)
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_11740 (dnaE)
Enzymes [BR:
vgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MID13_11740 (dnaE)
DNA replication proteins [BR:
vgi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MID13_11740 (dnaE)
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MID13_11740 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ULN63591
LinkDB
All DBs
Position
1:complement(2640781..2644260)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFLMQSPEFGDELTKLTVIATDNKGYNNLTLLISKAYLRGHVQHQPVIDKEW
LIENAEGLIILSGAKEGEIGKALLKGNRELVASNVEFYKTYFPDRFYLELIRTGRPDEES
YLHFALELAEQEDLPVVATNEVVFLTEDLFDAHEIRVAIHDGFTMVDPRRPKNYSAQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGLAIEDFLIKKSEEGL
ERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFLAEPA
LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPVRIESIPLDDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFNVDEDGAIVYGIGAIKG
VGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLGPHRAAMMA
SLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEGERETLGLY
LTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGVSISIDQSQINGQFFERFSQILEPYRAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDELKQLLGNSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccaaaatttgttcacctacgcgtacacagtgatttttctatggtggatggc
ctctctaaggtgccgccattagtaaaaaaagtcgctgaaatgggtatgcctgctctagca
ttgaccgatttcaccaacctttgtggtttggttaagttctacggtactgctcatgggtgc
ggggttaaaccaattattggtgctgacttcctaatgcagtctccagagttcggtgacgag
ttgaccaagctcaccgtcattgcaaccgacaataaaggttataacaacctaacgctgctt
atctcaaaagcctacctacgcggtcatgtacagcatcagcctgtcatcgataaagagtgg
ctgattgagaatgccgaaggcctaattatcctatcgggcgcgaaggaaggtgagattggt
aaagccttgttgaagggcaaccgtgaactcgttgcaagcaatgtagagttttacaaaaca
tacttccctgatcgtttttatcttgagttgattcgtaccggacgtccggatgaagagtct
tacctgcactttgcattggaactggctgagcaagaagacttgcctgttgttgcaaccaac
gaagtggtattcctgactgaagatctttttgatgcccatgaaatccgcgtggcgattcat
gatggtttcacgatggtcgatcctcgtcgtcctaaaaattacagcgcgcaacagtatctt
cgtagcgaagaagagatgtgtgagttgttctcagatatccctgaagcacttgagaacagt
gttgagattgccaagcgttgtaatgtaacggttcgtttaggtgaatacttcctacctaac
ttcccaacggaaggtttggcgattgaagatttcttgattaagaagtcagaagaaggcctt
gagcgacgtctagcgttcctattcccagatgaaaaagtgcgtgctgagcgcaggcctgag
tacgatgagcgactcaagatcgagctcgaagttgtcaacaacatgggtttcccaggttac
ttcttgatagtaatggagttcatccagtggtcaaaagacaacgatgtgccggtaggtcct
ggtcgtggttctggtgccggctctctagtcgcttacgcattggatatcaccgatctcgat
ccacttgaatacgatctccttttcgaacgtttcttgaacccagaacgtgtctcgatgccc
gatttcgatatcgacttctgtatggataagcgtgaccaagttatcgaccacgttgctgaa
atgtacggtcgtgatgcggtgtctcagatcatcacctttggtaccatggcagcgaaagcg
gtaatccgcgacgtaggccgtgtactgggtcacccgtttggcttcgttgaccgaatttca
aagcttgtaccgccagatccgggcatgacgctagagaaagcattccttgctgagccggcg
ctgccagagctttacgatggcgatgaagaagttcgtgaactgatcgataaatgtcgcatt
cttgaaggttgtacgcgaaacgccggtaaacacgcaggtggtgttgtaatctcaccaact
acgattactgactttgcgccaatttatgccgatgctgaaggtaacttcccagtaacgcaa
ttcgataagaatgacgttgaaacggctggcttggttaagtttgacttcttgggtctgcgt
accctgaccatcatcgactgggcgctaggcctagtgaacccacgtttgaagaaagagggt
aaagaaccggttcgtatcgagtcgattcctcttgatgaccaagcgtcgttcaacctatta
caaaactctgaaaccaccgcggtattccagctggaatcgcgtggtatgaaagacctgatc
aaacgtctacagcccgactgttttgaagatatcatcgcattggtagcactattccgtccg
ggtcctctgcaatcaggcatggtagataactttatcgaccgtaaacacggccgtgaagcg
gtttcttaccctgatgaaacgtggcaacacgaatcactaaaagagacactagaacctacc
tacggcatcatcctgtatcaagaacaggtaatgcagatcgcacagattctggcgggctat
acgcttggcggagcggatatgttgcgtcgtgcgatgggtaagaaaaagccagaagagatg
gcgaaacagcgtggtaccttcaaagagggtgctgaagccaacggtgttgatggcgagctg
gccatgaagatctttgacttggtagagaaatttgcgggctacggctttaacaaatctcac
tcggctgcatacgcactggtttcttaccaaacgctgtggttgaaaacgcactaccctgcg
gaatttatggctgcggtaatgacggcggatatggataacacagagaaggttattggcctt
gtggatgagtgtttccgtatgaagcttaagctactcccaccggatatcaactcgggcttg
taccgctttaacgtggatgaagatggcgcgattgtttatggtatcggcgcgatcaaagga
gtaggtgaaggtcctattgaagcgatcattgaagcgcgaaataagggcggttactttaaa
gacttattcgatttctgtgctcgtcttgatctgaagaaggtcaataaacgtgttatcgaa
aagttgattctatccggagccttagatagattaggtcctcaccgagcggcgatgatggca
tctttgaaagatgcagtgaaggcggcgagccaacaccaccatgccgagtcttttggtcaa
tctgatatgtttggtgtgttgactgacgctccggaagaggttgagcacaagtatactcaa
gtacctaaatggcctgagaaggtttggcttgagggggagcgtgaaacgcttggcttgtat
ttaacgggtcacccggtgaatgcttacatcaaagagttagcaaaatacacgagttgtcgt
ttgaaagacgcgacgccaacacgtcgtgaccaatcactaacgattgctggtttggttatt
gctgcgagagtgatgactacgaaacgcggtacacgaatcggtttgatgacacttgatgac
cgatcgggccgaatggaagtgatgctgttctcggatgcgctcgatcgctacgcagaattg
ctcgaaaaagacaaaattgtggtcgtttctggacaggtcagctttgatgatttcaatggc
gggcttaaaatgtccgcgcgcgaggtcatggacttaggaagcgcccgtgagaaatatgct
cgtggggtgtcgatatctatcgaccaatcccaaattaacggtcaattttttgaacgcttt
agtcaaatcttagaaccttatagagccggaacggtcccagtcaatgtatactaccagcgt
gccgacgctagagcgcggttaacattgggcacagaatggcgtgtgacgccaagtgataca
ttactagacgaattaaaacagctgcttggaaatagccaagtagaactcgaatttaactaa
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