Vibrio gigantis: MID13_13680
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Entry
MID13_13680 CDS
T08202
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vgi
Vibrio gigantis
Pathway
vgi02020
Two-component system
vgi02040
Flagellar assembly
vgi05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MID13_13680
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
MID13_13680
09142 Cell motility
02040 Flagellar assembly
MID13_13680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vgi03021
]
MID13_13680
Transcription machinery [BR:
vgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MID13_13680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
ULN63927
LinkDB
All DBs
Position
1:3049509..3050969
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AA seq
486 aa
AA seq
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MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLDVEEGNEDTPTSE
EKPSSDEKETVEATEQDLPDSSDLIEKSEIGNELEIDTTWEDVYSANTGNTGIAIDDDMP
VYQGETTQSLHDYLLWQLDLTPFTDTDRSIAFALIDAIDDYGYLTVTCEDILENFDNEEI
ELDEIEAVRKRIQQFDPLGVGSVNLQDCLLLQLATFPQDTPWLNEAKLVLTSHIDQLGNR
DYKLVIKETKLKEAELREVLQLIQQLDPRPGSKITPDETEYVVPDVSVFKDLGKWLVTIN
PDSVPKLKVNQQYADLGNKGNSADNQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQ
RDFFEHGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVSTDN
GGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaacttaagctaggccaacagttagcaatgactcctcaattgcag
caagcgattcgtttgttgcaattgtctactttagatttgcagcaagagatccaagaagca
cttgaatctaacccactactcgatgtcgaagaaggcaatgaagatacgccaacatcggaa
gaaaaacctagcagtgacgaaaaagaaaccgttgaagccacggagcaagacttacctgat
agctcagacttaatcgaaaaatcagagattggcaacgaactagaaatcgacacaacttgg
gaagacgtctacagcgcaaacaccggtaacacaggtattgcgattgatgacgacatgcct
gtttatcaaggcgaaaccactcaaagcctgcacgattacctactttggcaactcgaccta
acaccattcactgacacagaccgaagcatagcttttgcattgatcgatgccatcgatgac
tatggctacctcactgtaacttgtgaagacatccttgaaaacttcgataatgaagagatt
gagcttgatgaaattgaagccgtacgtaagcgaattcagcagtttgatccgctaggtgtc
ggttcagtcaatctgcaagattgcttgttactgcaactggcaaccttccctcaagatact
ccttggctcaacgaagctaagttagtacttactagccatatagaccaactcggcaatcgt
gattacaaactggttatcaaagagaccaagttgaaagaggcagaactacgtgaagttttg
cagcttattcaacaactggaccctcgccctggcagtaagattactccggatgaaactgag
tatgtggttccggatgtatctgtcttcaaagaccttggtaaatggttagtgacaattaac
cctgatagcgtgcctaagctgaaagtgaatcagcaatacgcggatctgggtaacaaaggc
aacagcgccgacaatcaatacatccgctccaatttgcaagaagcaaagtggctaattaaa
agcctagagagccgaaatgagacgctactcaaagttgcgcggtgtattgttgaacatcag
cgtgatttcttcgaacatggcgaagaagcgatgaagccaatggttcttaatgatgttgca
ttagctgttgatatgcacgaatccacgatttctcgtgtgacgactcaaaagtttatgcac
acaccacgtggcatcttcgaactcaaatactttttctcgagccatgtcagtactgacaat
ggtggtgaatgttcatcgacagcaattcgagcactcattaagaagcttgttgcggcagaa
aataccgctaaacctctaagtgatagtaagattgctgctttactggctgaccaaggaatt
caggtagctagacgtacgatagcgaaataccgtgagtctctgggcattgccccatcgagt
cagcgtaaacgcctgttataa
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