Vibrio gigantis: MID13_15185
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Entry
MID13_15185 CDS
T08202
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MID13_15185 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vgi03019
]
MID13_15185 (rhlB)
Enzymes [BR:
vgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MID13_15185 (rhlB)
Messenger RNA biogenesis [BR:
vgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MID13_15185 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ULN64189
LinkDB
All DBs
Position
1:3362114..3363424
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AA seq
436 aa
AA seq
DB search
MKKTHITEQKFADLDLLPQVIEGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYG
GESYDKQLGKIEEGADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPPIEEYIEHAIPVSDYDASALLEDLPAPLRLRTRNPQQRRSNNNGPRNGNRK
PNQNRRPRQPRHNKEA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgacttggatttacttccgcaagtc
attgaaggattggagaaaaaagggttcgattattgtacccctatccaagccttggcgctc
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaaaacg
cttgcgtttcttactgctacttttaaccacctgctaaaaacacctgagcatgaagggcgt
aagcctaaccagccacgtgcgattattatggcaccaacgcgtgaactcgcgattcagatc
tacaacgatgctgactctctggttgaaagcacaggtatcaaggcagcacttgcttacggt
ggcgaaagctacgacaagcaactaggtaagatcgaagaaggcgcagatatcttaattggt
acgactggccgcatcatcgatttctacaagcaaaaggtatttaaccttaaccacattcaa
gccgttgttcttgacgaagctgatcgcatgttcgatcttggtttcatcaaagacatccgc
ttcttgtttcgccgtatgcctgagccaaaagatcgtctgaacatgctgttctctgcgaca
ttgtcttaccgcgtacaagagctagcgttcgagcacatgcacaacccagagcatgttgtt
gttgagcccgagcgtaaaacaggtcaccgtattcaggaagagctgttctacccttcaaac
gaacacaagatggcacttctgcagacgctcattgaagaagagtggccagagcgcgctatc
atcttcgctaacactaagcacaaatgtgagtctgtttggggccacctagctgctgatggt
caccgtgttggcctactaacaggtgatgttcctcaaaagaaacgtgaaaagattcttgag
caattcactaaaggtgatgttgatctacttgtcgcaaccgacgttgcagcacgtggccta
cacattcctcaagtaacacacgtgttcaacttcgatctacctgatgactgtgaagattac
gttcaccgtatcggccgtaccggtcgtgctggtgcaagtggtcactcaatcagctttgct
tgtgaagattacgcaatcaacttgccaccaatcgaagaatacattgagcacgctatccct
gtgtctgactacgatgcttctgcactgctagaagatctaccagcaccattgcgtttacgc
acacgtaacccgcaacaacgccgctcaaataacaatggcccacgcaacggcaaccgtaaa
ccaaaccagaaccgtcgcccacgccaaccgcgtcataacaaggaagcttag
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