Vibrio gigantis: MID13_15235
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Entry
MID13_15235 CDS
T08202
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vgi
Vibrio gigantis
Pathway
vgi03420
Nucleotide excision repair
vgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MID13_15235 (uvrD)
03430 Mismatch repair
MID13_15235 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vgi03400
]
MID13_15235 (uvrD)
Enzymes [BR:
vgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MID13_15235 (uvrD)
DNA repair and recombination proteins [BR:
vgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MID13_15235 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MID13_15235 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
ULN64199
LinkDB
All DBs
Position
1:complement(3374121..3376295)
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AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
VRLLRRLIKAQNLDEKQWPAKQASWWINGKKDEGLRPSHIDAYHDPITQTWLKIYSAYQE
ACDRAGLVDFAEILLRSHELLRDKKHIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
DCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFPGASTIRLEQNYRSTKTILQASNELISN
NTERMGKELWTDGNDGEPISVYSAYNELDEARFTVSKIKEWQEKGGALEDTAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIRDALSYMRLMSNRSNDAAFERVVNTPTRGLG
DKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFIELINALEDDTLELSLHE
QTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEADEMSMLTAFLTHAA
LEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMEKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEQL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatagatccttcgcttttactcgatggcttaaacgacaaacaacgtgaggcggtcgcg
gcacctttagaaaacctacttattctggcaggtgctggtagtggtaaaacgcgagtgttg
gtgcatcgtatcgcttggttgcaaagtgtagagcaagcatcaccgttctctattatgtct
gttaccttcaccaacaaggcggcggcagagatgcgtggtcgtattgaagagttgatgatg
ggcagctcgtcaggcatgtggaacggcaccttccatggtatctgtcaccgcatccttcgt
gctcactacctagatgcaaaactgccagaagatttccagatcattgattcagatgatcag
gttcgtttgctacgccgcttaatcaaggcgcaaaaccttgatgaaaaacagtggcctgcc
aagcaagcttcttggtggataaatggcaagaaagacgagggattacgcccaagtcacatt
gacgcctaccatgatccaatcactcaaacgtggttaaagatctactctgcttatcaagag
gcgtgtgaccgtgctggcttggtcgactttgcggaaatcttgttgagatcgcatgaacta
ttacgcgataagaaacacattcgagagcactaccaagctcgcttcaagcatatccttgtc
gacgaattccaagataccaacaatattcagtatgcttggttacgcatgatggcaggcccg
gattgccgcgtgatgatcgtgggtgatgacgaccaatctatctatggctggcgtggtgcg
aaaattgaaaatattcagaagttcttggatgagttcccaggtgcttcaacgattcgactc
gaacaaaactaccgctcaaccaaaaccattctgcaggcatcgaatgagcttatctcgaac
aacaccgaacgtatgggtaaagagttgtggaccgatggtaatgatggtgagcccatctct
gtgtactcggcttacaacgagctagatgaagcgcgttttacggtcagtaaaatcaaagag
tggcaagagaaaggcggggcgctagaagatacggcaatgctttatcgtaataacgctcag
tctcgtgtcctggaagaagcgctgattcaagcgggcttaccataccgaatctacggcggc
atgcgattcttcgagcgtcaagaaatcagagatgctttgagctacatgcgcctaatgagt
aaccgcagcaatgatgcggcgtttgaacgtgtcgttaatacgccaacgcgtggcttgggt
gataaaacgttagaaacgattcgtcttgcagcgcgtgatcgtggtgcaaccatgtgggaa
gcaagtgttgctttgatagaagagcaagtgctacccggccgtgctgcgggtgcgttgagt
cgctttatcgagcttattaatgcgcttgaagatgacacgctagaacttagcctgcatgaa
caaaccgaccatgtgattaagtcgtcgggtctatttgcgatgtacgagcaagagaaaggc
gagaaatcgaaagcgcgtattgagaacttggaagaattggtaacggcaactcgtcagttc
gagaagccagaagaagccgatgagatgagcatgctaacagcatttttaacccacgcggct
ttggaagcgggtgaaggtcaggctgacgagtttgatgatgcggttcagcttatgactctg
cacagtgctaaaggtctagagttcccaatggtgttcatggtaggtgtcgaagaaggcatg
ttcccaagccagatgtctgccgaagaagcgggacgtttagaagaagagcgtcgcctatgt
tacgtaggtatgacccgtgcgatggagaaactgtacatcacttacgcagagatgcgtcgt
ttgtacggacaagacaaataccacaaaccatcacgttttattcgtgagctgccagaaacc
tgtttggatgaagttcgtatgaaagcgcaggtcagtcgccctgcgagtagtggccgcttt
agccaaaccgccgtgaaagaaaatttcaacgaaacgggctttagcttaggttctcgcgtt
aagcaccctaagtttggcgaaggtactatcatcaacttcgaaggaagcggtccacagagc
cgagtgcaggtggcgtttaacggtgaaggcattaagtggttagtgacggcttacgcgcgt
ttagagcagctttaa
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